Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3804223	3804535	313	40 [39]	[36] 43	waaS	lipopolysaccharide rhamnose:KdoIII transferase; lipopolysaccharide core biosynthesis protein

AAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATGCCGCCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGACTGAATTTATATAAACTATCATAATCCATTGGTTTAACAGATGAGTTAATAAAATACTCTAACTTATCCCAATCATCATGACCTATTATAAAAAAGCGAGATTCACTATAGATTTC  >  NC_000913/3804026‑3804345                                                                                                                                                                                                     |                                                                                                                            aaaaCATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATGCCGCCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATc                                                                                                                          <  2:519928/200‑1 (MQ=255) aaaaCATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATGCCGCCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATc                                                                                                                          <  2:357500/200‑1 (MQ=255)      aTTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTACATGCCACCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGAc                                                                                                                     <  2:96627/200‑1 (MQ=255)           aCTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATGCCGCCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTGACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGACTGAAt                                                                                                                <  2:510981/200‑1 (MQ=255)                                    gtagtaATAACATCACGGATGACAGTTTCCATGCCGCCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATc                                                                                                                          <  2:587778/165‑1 (MQ=255)                                           taaCATCACGGATGACAGTTTCCATGCCGCCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGACTGAATTTATATAAACTATCATAATCCATTGGTTTAAc                                                                                <  2:107371/200‑1 (MQ=255)                                                tCACGGATGACAGTTTCCATGCCGCCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCAtttt                                                                                                                             <  1:562858/150‑1 (MQ=255)                                                 cACGGATGACAGTTTCCATGCCGCCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTa                                                                                                                            <  1:731836/150‑1 (MQ=255)                                                  aCGGATGACAGTTTCCATGCCGCCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGACTGAATTTATATAAACTATCATAATCCATTGGTTTAACAg                                                                              <  2:30038/195‑1 (MQ=255)                                                  aCGGATGACAGTTTCCATGCCGCCAAATCCAGAAACAGCTTCGCCGATAAAAGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTAt                                                                                                                           >  1:30036/1‑150 (MQ=255)                                                        gACAGTATACATGCCGCCGAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCTTTAATTAAGTAAAACTCACTGTTTTAACGGTTTAATTTGTCTATAAAATCAGAAACAAACGTTGACATCATTTTATCTGGAc                                                                                                                     <  1:80991/150‑1 (MQ=255)                                                         aCAGTTTCCATGCCGCCAAATCCAGAACCAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGATTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGACTGAATTTATATAAACTATCATAATCCATTGGTTTAACAGATGAGTtaataa                                                                  <  2:365897/200‑1 (MQ=255)                                                             tttCCATGCCGCCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGACTGAAt                                                                                                                <  1:321972/150‑1 (MQ=255)                                                              ttCCATGCCGCCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGACTGAATTTATATAAACTATCATAATCCATTGGTTTAACAGATGAGTTAATAAAATAc                                                             <  2:469152/200‑1 (MQ=255)                                                                  aTGCCGCCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGACTGAATTtata                                                                                                           <  1:35044/150‑1 (MQ=255)                                                                     ccgccAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATc                                                                                                                          <  4:328968/132‑1 (MQ=255)                                                                      cgccAAAACCAGAAACAGCTTCGCCGATAAACCCTATTTTCATAGATACTCGCATTTATTCATTAATACTCACTGTTTTAACGGTCTTATTGGTCTATAAGAACAGAAACAATCGTTGACATCTTTTTATCTGGACTGAATTTATAGAACCTATCAGTATCCATGGGTTTAACACATGAGTTAATAAAATACTCTAACtt                                                     <  2:558091/200‑1 (MQ=255)                                                                           aaTCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGACTGAATTtata                                                                                                           <  3:293134/141‑1 (MQ=255)                                                                               cAGAAACGGCTTCGCAGATAAACGCTATTGTCATAGAAACTCTCATTAATTGAGTAGAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGACTGAAt                                                                                                                <  4:463433/132‑1 (MQ=255)                                                                               cAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGACTGAATTTATATAAACTATCATaa                                                                                              <  1:612912/150‑1 (MQ=255)                                                                                aGAATCAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGACTGAATTTATATAAAc                                                                                                      <  3:582532/141‑1 (MQ=255)                                                                                 gAAACAGCTTCGCCGATAAACGCTATTATCATAGAAACTCTCATTAATTGAGTAAAACGCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGTCTGAATTTATATAAACTATCATAATc                                                                                            <  1:525924/150‑1 (MQ=255)                                                                                          tCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGACTGAATTTATATAAACTATCATAATc                                                                                            <  3:178338/141‑1 (MQ=255)                                                                                                    aCGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGACTGAATTTATATAAACTATCATAATCCATTGGTTTAACAGATGAg                                                                         <  1:676354/150‑1 (MQ=255)                                                                                                              cATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGACTGAATTtata                                                                                                           <  2:732283/106‑1 (MQ=255)                                                                                                              cATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGACTGAATTtata                                                                                                           >  1:732224/1‑106 (MQ=255)                                                                                                                        ctcATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCt                                                                                                                         >  3:469000/1‑82 (MQ=255)                                                                                                                        ctcATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCt                                                                                                                         <  4:468988/82‑1 (MQ=255)                                                                                                                        ctcATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGACTGAATTtat                                                                                                            >  3:257563/1‑95 (MQ=255)                                                                                                                        ctcATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGACTGAATTtat                                                                                                            <  4:257556/95‑1 (MQ=255)                                                                                                                                  gAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGAc                                                                                                                     <  3:412147/76‑1 (MQ=255)                                                                                                                                  gAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGAc                                                                                                                     >  4:412134/1‑76 (MQ=255)                                                                                                                                     tAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGACTGAATTTATATAAACTATCATAATCCATTGGTTTAACAGATGAGTTAATAAAATACTCTAACTTATCCCAAtcatca                                        <  1:98034/150‑1 (MQ=255)                                                                                                                                              cTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGACTGAATTTATATAAACTATCATAATCCATTGGTTTAACAGATGAGTTAATAAAATACTCTAACTTATCCCAAtcatca                                        <  3:729460/141‑1 (MQ=255)                                                                                                                                                gTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGACTGAATTtata                                                                                                           <  3:525403/72‑1 (MQ=255)                                                                                                                                                gTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGACTGAATTtata                                                                                                           >  4:525389/1‑72 (MQ=255)                                                                                                                                                gTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGACTGAATTTATATAAACt                                                                                                     >  1:33143/1‑78 (MQ=255)                                                                                                                                                gTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGACTGAATTTATATAAACt                                                                                                     <  2:33146/78‑1 (MQ=255)                                                                                                                                                                                     aTCGTTGACATCATTTTATCTGGACTGAATTTATATAAACTATCATAATCCATTGGTTTAACAGATGAGTTAATAAAATACTCTAACTTATCCCAATCATCATGACCTATTATAAAAAAGCGAGATTCACTATAGATTTc  >  1:355854/1‑140 (MQ=255)                                                                                                                                                                                     aTCGTTGACATCATTTTATCTGGACTGAATTTATATAAACTATCATAATCCATTGGTTTAACAGATGAGTTAATAAAATACTCTAACTTATCCCAATCATCATGACCTATTATAAAAAAGCGAGATTCACTATAGATTTc  <  2:355888/140‑1 (MQ=255)                                                                                                                                                                                                     |                                                                                                                            AAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATGCCGCCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTATAAAATCAGAAACAATCGTTGACATCATTTTATCTGGACTGAATTTATATAAACTATCATAATCCATTGGTTTAACAGATGAGTTAATAAAATACTCTAACTTATCCCAATCATCATGACCTATTATAAAAAAGCGAGATTCACTATAGATTTC  >  NC_000913/3804026‑3804345

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.