New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4409174 =NA (NA)6 (0.060) 6/276 9.9 5.4% noncoding (22/98 nt) RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 4409235 = 105 (1.130)noncoding (83/98 nt) RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Position hash score below cutoff.

Only 100 of 123 total aligned reads displayed.

GCCGAAAGCGGCGAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGA  >  NC_000913/4408981‑4409369
                                                                                                                                                                                                 |                                                                                                                                                                                                     
gCCGAAAGCGGCGAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCg                                                                                                                                                                                                 >  4:77824/1‑200 (MQ=255)
         ggcgAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATa                                                                                                                                                                                        >  4:125761/1‑200 (MQ=255)
           cgAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAAt                                                                                                                                                                                      <  4:187429/200‑1 (MQ=255)
                      gcgAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTc                                                                                                                                                                          <  4:570798/200‑1 (MQ=255)
                           aaaaGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAata‑t                                                                                                                                                                    <  4:828732/200‑1 (MQ=255)
                           aaaaGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAata‑t                                                                                                                                                                    <  4:74262/200‑1 (MQ=255)
                           aaaaGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAata‑t                                                                                                                                                                    <  4:121530/200‑1 (MQ=255)
                           aaaaGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAata‑t                                                                                                                                                                    <  4:232974/200‑1 (MQ=255)
                                  aaaaaGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCag                                                                                                                                                             <  4:560415/200‑1 (MQ=255)
                                          aTCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATg                                                                                                                                                     <  4:747803/200‑1 (MQ=255)
                                           tCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGt                                                                                                                                                    <  4:751214/200‑1 (MQ=255)
                                                 aaaaCGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATcc                                                                                                                                                                                                  <  3:225737/150‑1 (MQ=255)
                                                         gAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATc                                                                                                                                                                                                   >  1:503413/1‑141 (MQ=255)
                                                         gAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACg                                                                                                                                      >  4:214199/1‑200 (MQ=255)
                                                         gAAAATAGCTGAATCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTGTAAAAGAAGAGGATTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATc                                                                                                                                                                                                   <  1:558298/141‑1 (MQ=255)
                                                          aaaaTAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATcc                                                                                                                                                                                                  <  1:700643/141‑1 (MQ=255)
                                                          aaaaTAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATcc                                                                                                                                                                                                  <  1:120831/141‑1 (MQ=255)
                                                          aaaaTAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAt                                                                                                                                                                                         <  3:158037/150‑1 (MQ=255)
                                                          aaaaTAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGt                                                                                                                                     <  4:295105/200‑1 (MQ=255)
                                                          aaaaTAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGt                                                                                                                                     <  4:653304/200‑1 (MQ=255)
                                                          aaaaTAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGt                                                                                                                                     <  4:655511/200‑1 (MQ=255)
                                                              tAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAA‑CAC‑GCAAAATCAATATTTTTAAAGAGATAATGTAGGCCgaaaaacggaattg                                                                                                                                 >  4:65271/1‑187 (MQ=37)
                                                                  tGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATc                                                                                                                                                                                                   <  2:684968/132‑1 (MQ=255)
                                                                        gACCAAAGCGAAGCGTGCGGAGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCa                                                                                                                                                                                    <  1:424124/141‑1 (MQ=255)
                                                                            aaaGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAt                                                                                                                                                                                         <  2:696448/132‑1 (MQ=255)
                                                                            aaaGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAt                                                                                                                                                                                         <  2:501939/132‑1 (MQ=255)
                                                                            aaaGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAata                                                                                                                                                                      >  3:205554/1‑150 (MQ=255)
                                                                             aagcgaagcgTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAata‑t                                                                                                                                                                    <  3:117676/150‑1 (MQ=255)
                                                                               gcgaagcgTGAGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAata‑tat                                                                                                                                                                  <  3:462897/150‑1 (MQ=255)
                                                                                 gaagcgTGCGACGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGGTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCa                                                                                                                                                                                    <  2:475262/132‑1 (MQ=255)
                                                                                    gcgTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCag                                                                                                                                                             <  3:213425/150‑1 (MQ=255)
                                                                                      gTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAata‑t                                                                                                                                                                    <  1:691315/141‑1 (MQ=255)
                                                                                       tGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAgaga                                                                                                                                                          <  3:24030/150‑1 (MQ=255)
                                                                                           gcgAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAGCGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGc                                                                                                                                                               <  1:237941/141‑1 (MQ=255)
                                                                                           gcgAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGc                                                                                                                                                               <  1:79367/141‑1 (MQ=255)
                                                                                             gaagaaAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGAATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCag                                                                                                                                                             <  1:36022/141‑1 (MQ=255)
                                                                                               agaaAAAAGTGGCAGTGTGATCAATACCCTCTTTAGAAGAAGGGGGTTAGAGTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAata‑t                                                                                                                                                                    <  2:554844/132‑1 (MQ=255)
                                                                                               agaaAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAata‑t                                                                                                                                                                    <  2:334376/132‑1 (MQ=255)
                                                                                               agaaAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAg                                                                                                                                                  <  3:524212/150‑1 (MQ=255)
                                                                                               agaaAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTaa                                                                                                <  4:836748/200‑1 (MQ=255)
                                                                                               agaaAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTaa                                                                                                <  4:572726/200‑1 (MQ=255)
                                                                                                gaaAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGGAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAgaga                                                                                                                                                          <  1:631235/141‑1 (MQ=255)
                                                                                                gaaAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAAt                                                                                               >  4:19228/1‑200 (MQ=255)
                                                                                                 aaaaaaGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATg                                                                                              <  4:851941/200‑1 (MQ=255)
                                                                                                      aGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCag                                                                                                                                                             <  2:457719/132‑1 (MQ=255)
                                                                                                      aGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCag                                                                                                                                                             <  2:431259/132‑1 (MQ=255)
                                                                                                      aGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGt                                                                                                                                                    <  1:671017/141‑1 (MQ=255)
                                                                                                          gCAGAGTGATCAATACCCTCTTGAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAAc                                                                                                                                       <  3:339587/150‑1 (MQ=255)
                                                                                                            agatTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGt                                                                                                                                     <  3:181031/150‑1 (MQ=255)
                                                                                                            agagTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGt                                                                                                                                     <  3:312464/150‑1 (MQ=255)
                                                                                                            agagTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGt                                                                                                                                     <  3:406517/150‑1 (MQ=255)
                                                                                                               gTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGt                                                                                                                                                    <  2:503390/132‑1 (MQ=255)
                                                                                                               gTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGt                                                                                                                                                    >  2:560289/1‑132 (MQ=255)
                                                                                                                 gATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGc                                                                                                                                >  3:856366/1‑150 (MQ=255)
                                                                                                                 gATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACg                                                                              >  4:499976/1‑200 (MQ=255)
                                                                                                                  aTCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATaaa                                                                                                                                        >  1:193098/1‑141 (MQ=255)
                                                                                                                  aTCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGt                                                                                                                                     <  4:208691/144‑1 (MQ=255)
                                                                                                                  aTCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGt                                                                                                                                     >  3:208682/1‑144 (MQ=255)
                                                                                                                  aTCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACgg                                                                             <  4:608454/200‑1 (MQ=255)
                                                                                                                   tCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCACTA‑TATTGCAGAGATCATGTAGGCCGGATAAAc                                                                                                                                       >  1:340834/1‑141 (MQ=255)
                                                                                                                   tCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGc                                                                                                                                                >  2:427825/1‑132 (MQ=255)
                                                                                                                   tCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGc                                                                                                                                                <  2:85721/132‑1 (MQ=255)
                                                                                                                   tCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAAc                                                                                                                                       >  1:319176/1‑141 (MQ=255)
                                                                                                                   tCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCAt                                                                                                                              <  3:131743/150‑1 (MQ=255)
                                                                                                                   tCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCAt                                                                                                                              >  3:15498/1‑150 (MQ=255)
                                                                                                                   tCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGCTTTACGGc                                                                            >  4:332108/1‑200 (MQ=255)
                                                                                                                    cAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGcc                                                                                                                                               <  2:604197/132‑1 (MQ=255)
                                                                                                                        aCCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCa                                                                       >  4:454906/1‑200 (MQ=255)
                                                                                                                        aCCCTCCTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGAt                                                                                                                                           >  2:380797/1‑132 (MQ=255)
                                                                                                                             ctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGATCTCTGCAATATCTTGA‑ATTTGC‑GTGATTATGTAGGCCGGATAAACGTAGTGCATc                                                                                                                             >  1:334451/1‑141 (MQ=18)
                                                                                                                             ctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACg                                                                                                                                      >  2:431177/1‑132 (MQ=255)
                                                                                                                             ctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACg                                                                                                                                      >  2:188317/1‑132 (MQ=255)
                                                                                                                             ctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGc                                                                                                                                >  3:603520/1‑138 (MQ=255)
                                                                                                                             ctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATc                                                                                                                             >  1:596287/1‑141 (MQ=255)
                                                                                                                             ctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAAc                                                                                                                    >  3:748802/1‑150 (MQ=255)
                                                                                                                              tttAAAATAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACg                                                                                                                   <  3:90931/150‑1 (MQ=255)
                                                                                                                                    agcagtgggTTAGATTGCTGACAAAATGCGCTTCGAACATGCCGGATGCGCCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCCAATTCAATC‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAaaca                                                                                                             >  3:307182/7‑150 (MQ=21)
                                                                                                                                     gaagaGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGcc                                                          <  4:591299/200‑1 (MQ=255)
                                                                                                                                      aagaGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAAc                                                                                                                    <  1:431196/141‑1 (MQ=255)
                                                                                                                                          gggTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGCGATCATGTAGGCCGGATACACGTAGTGCATCAGGc                                                                                                                         >  2:483994/1‑132 (MQ=255)
                                                                                                                                          gggTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGc                                                                                                                         >  2:228598/1‑132 (MQ=255)
                                                                                                                                          gggTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCctgct                                                     <  4:786799/200‑1 (MQ=255)
                                                                                                                                            gTTAGATTTCTGACAAAATGCGCTTTGTTCATGCCGGATGCCGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TCTTGCCGACACCATGTAGGCCGGATAAACGCAGTGCATCAGGCaa                                                                                                                       >  2:632925/1‑132 (MQ=18)
                                                                                                                                              tAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAaacaa                                                                                                            <  1:205090/141‑1 (MQ=255)
                                                                                                                                                gATTGCTGGCAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACg                                                                                                                   <  2:52634/132‑1 (MQ=255)
                                                                                                                                                 aTTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTaa                                                                                                <  3:625579/150‑1 (MQ=255)
                                                                                                                                                   tGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATg                                                                                              <  3:590746/150‑1 (MQ=255)
                                                                                                                                                    gCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTaaa                                                                                                               >  2:26285/1‑132 (MQ=255)
                                                                                                                                                          aaaaTGCGGTTTGTTCGTGCCGGATGCGGCGTGAACGCCTTATCCGGCATACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCGGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTaa                                                                                                <  1:291952/141‑1 (MQ=255)
                                                                                                                                                          aaaaTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTaa                                                                                                <  1:560320/141‑1 (MQ=255)
                                                                                                                                                            taTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGATCAC‑GCAAATTCGATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATg                                                                                              <  1:479178/140‑1 (MQ=255)
                                                                                                                                                            aaTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATg                                                                                              <  1:4290/141‑1 (MQ=255)
                                                                                                                                                               gcgcTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGttt                                >  4:651271/1‑200 (MQ=255)
                                                                                                                                                                 gcTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTc                              >  4:411741/1‑200 (MQ=255)
                                                                                                                                                                               ggATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCGCCTGAACGTTTTCAGGAAGTCTTTAtt                <  4:312414/200‑1 (MQ=255)
                                                                                                                                                                                gATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGt                                                                 >  3:617766/1‑150 (MQ=255)
                                                                                                                                                                                      atgcactacgtttATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAg         >  4:340226/12‑200 (MQ=255)
                                                                                                                                                                                             acgtttATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGa  >  4:475453/5‑200 (MQ=255)
                                                                                                                                                                                              gCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCTCTGCTgg                                                   >  3:75409/1‑150 (MQ=255)
                                                                                                                                                                                                cTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAg                                                 <  3:626546/150‑1 (MQ=255)
                                                                                                                                                                                                 |                                                                                                                                                                                                     
GCCGAAAGCGGCGAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATA‑TATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGA  >  NC_000913/4408981‑4409369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.