New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4409174 =NA (NA)6 (0.060) 6/276 9.9 5.4% noncoding (22/98 nt) RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 4409235 = 105 (1.130)noncoding (83/98 nt) RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Position hash score below cutoff.

Only 100 of 119 total aligned reads displayed.

GAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATAAACGTCTGTTACCGCTGATTCACGCCCTTGAGTCTCAGGGCGTGGTTATCCAGTT  >  NC_000913/4409038‑4409429
                                                                                                                                                                                                      |                                                                                                                                                                                                  
gAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACg                                                                                                                                                                                                  >  4:230575/1‑200 (MQ=255)
gAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACg                                                                                                                                                                                                  >  4:214199/1‑200 (MQ=255)
 aaaaTAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGt                                                                                                                                                                                                 <  4:655511/200‑1 (MQ=255)
 aaaaTAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGt                                                                                                                                                                                                 <  4:653304/200‑1 (MQ=255)
 aaaaTAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGt                                                                                                                                                                                                 <  4:295105/200‑1 (MQ=255)
                                      agaaAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTaa                                                                                                                                                            <  4:836748/200‑1 (MQ=255)
                                      agaaAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTaa                                                                                                                                                            <  4:572726/200‑1 (MQ=255)
                                       gaaAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAAt                                                                                                                                                           >  4:19228/1‑200 (MQ=255)
                                        aaaaaaGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATg                                                                                                                                                          <  4:851941/200‑1 (MQ=255)
                                                 gCAGAGTGATCAATACCCTCTTGAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAAc                                                                                                                                                                                                   <  3:339587/150‑1 (MQ=255)
                                                   agatTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGt                                                                                                                                                                                                 <  3:181031/150‑1 (MQ=255)
                                                   agagTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGt                                                                                                                                                                                                 <  3:406517/150‑1 (MQ=255)
                                                      gTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGt                                                                                                                                                                                              >  3:780666/1‑150 (MQ=255)
                                                      gTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTa                                                                                                                                            >  4:721108/1‑200 (MQ=255)
                                                        gATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGc                                                                                                                                                                                            >  3:856366/1‑150 (MQ=255)
                                                        gATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGc                                                                                                                                                                                            >  3:418655/1‑150 (MQ=255)
                                                        gATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTAc                                                                                                                                                                 <  4:856430/177‑1 (MQ=255)
                                                        gATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACg                                                                                                                                          >  4:499976/1‑200 (MQ=255)
                                                         aTCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATaaa                                                                                                                                                                                                    >  1:193098/1‑141 (MQ=255)
                                                         aTCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGt                                                                                                                                                                                                 >  3:208682/1‑144 (MQ=255)
                                                         aTCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACgg                                                                                                                                         <  4:608454/200‑1 (MQ=255)
                                                          tCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCACTATATTGCAGAGATCATGTAGGCCGGATAAAc                                                                                                                                                                                                   >  1:340834/1‑141 (MQ=255)
                                                          tCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCAt                                                                                                                                                                                          >  3:15498/1‑150 (MQ=255)
                                                          tCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCAt                                                                                                                                                                                          <  3:131743/150‑1 (MQ=255)
                                                          tCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGCTTTACGGc                                                                                                                                        >  4:332108/1‑200 (MQ=255)
                                                          tCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGc                                                                                                                                        >  4:520462/1‑200 (MQ=255)
                                                                    ctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGATCTCTGCAATATCTTGAATTTGC‑GTGATTATGTAGGCCGGATAAACGTAGTGCATc                                                                                                                                                                                         >  1:334451/1‑141 (MQ=18)
                                                                    ctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACg                                                                                                                                                                                                  >  2:188317/1‑132 (MQ=255)
                                                                    ctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGc                                                                                                                                                                                            <  4:603564/138‑1 (MQ=255)
                                                                    ctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGc                                                                                                                                                                                            >  3:603520/1‑138 (MQ=255)
                                                                    ctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATc                                                                                                                                                                                         >  1:40617/1‑141 (MQ=255)
                                                                    ctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATc                                                                                                                                                                                         >  1:596287/1‑141 (MQ=255)
                                                                    ctTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAAc                                                                                                                                                                                >  3:748802/1‑150 (MQ=255)
                                                                     tttAAAGGAAGAGGGTTAGATTGCTGACAAAAGGCGCTTTGTTCATACCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATAATGTAGGCCGGATAAACGt                                                                                                                                                                                                 <  2:109413/132‑1 (MQ=255)
                                                                     tttAAAATAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACg                                                                                                                                                                               <  3:90931/150‑1 (MQ=255)
                                                                     tttAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTGAATATATTGCAGAGATCATGTAGGCCGGATAAACGt                                                                                                                                                                                                 <  2:471029/132‑1 (MQ=255)
                                                                           agcagtgggTTAGATTGCTGACAAAATGCGCTTCGAACATGCCGGATGCGCCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCCAATTCAATCTATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAaaca                                                                                                                                                                         >  3:307182/7‑150 (MQ=21)
                                                                            gaagaGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGcc                                                                                                                      <  4:375976/200‑1 (MQ=255)
                                                                            gaagaGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGcc                                                                                                                      <  4:591299/200‑1 (MQ=255)
                                                                             aagaGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAAc                                                                                                                                                                                <  1:431196/141‑1 (MQ=255)
                                                                                 gggTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGCGATCATGTAGGCCGGATACACGTAGTGCATCAGGc                                                                                                                                                                                     >  2:483994/1‑132 (MQ=255)
                                                                                 gggTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGc                                                                                                                                                                                     >  2:392440/1‑132 (MQ=255)
                                                                                 gggTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTaa                                                                                                                                                                            >  1:523347/1‑141 (MQ=255)
                                                                                 gggTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCctgct                                                                                                                 <  4:786799/200‑1 (MQ=255)
                                                                                   gTTAGATTTCTGACAAAATGCGCTTTGTTCATGCCGGATGCCGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATCTTGCCGACACCATGTAGGCCGGATAAACGCAGTGCATCAGGCaa                                                                                                                                                                                   >  2:632925/1‑132 (MQ=18)
                                                                                     tAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAaacaa                                                                                                                                                                        <  1:205090/141‑1 (MQ=255)
                                                                                       gATTGCTGGCAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACg                                                                                                                                                                               <  2:52634/132‑1 (MQ=255)
                                                                                          tGCTGACAAAATTCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATg                                                                                                                                                          <  3:292514/150‑1 (MQ=255)
                                                                                          tGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATg                                                                                                                                                          <  3:590746/150‑1 (MQ=255)
                                                                                           gCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTaaa                                                                                                                                                                           >  2:26285/1‑132 (MQ=255)
                                                                                                 aaaaTGCGGTTTGTTCGTGCCGGATGCGGCGTGAACGCCTTATCCGGCATACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCGGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTaa                                                                                                                                                            <  1:291952/141‑1 (MQ=255)
                                                                                                  aaaTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAAt                                                                                                                                                  <  3:125759/150‑1 (MQ=255)
                                                                                                   taTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGATCAC‑GCAAATTCGATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATg                                                                                                                                                          <  1:479178/140‑1 (MQ=255)
                                                                                                   aaTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATg                                                                                                                                                          <  1:4290/141‑1 (MQ=255)
                                                                                                        gcTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTc                                                                                          >  4:411741/1‑200 (MQ=255)
                                                                                                                      ggATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCGCCTGAACGTTTTCAGGAAGTCTTTAtt                                                                            <  4:312414/200‑1 (MQ=255)
                                                                                                                       gATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGt                                                                                                                             >  3:617766/1‑150 (MQ=255)
                                                                                                                             atgcactacgtttATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAg                                                                     >  4:340226/12‑200 (MQ=255)
                                                                                                                              cgTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGcc                                                                                                                      <  3:200328/150‑1 (MQ=255)
                                                                                                                                    acgtttATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGa                                                              >  4:475453/5‑200 (MQ=255)
                                                                                                                                     gCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCTCTGCTgg                                                                                                               >  3:75409/1‑150 (MQ=255)
                                                                                                                                       cTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAg                                                                                                             <  3:626546/150‑1 (MQ=255)
                                                                                                                                         tATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAgcg                                                                                                           >  3:40106/1‑150 (MQ=255)
                                                                                                                                         tATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATa                                                         <  4:467281/200‑1 (MQ=255)
                                                                                                                                                ccTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAg                                                                                                             <  1:281746/141‑1 (MQ=255)
                                                                                                                                                 cTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATAAACGTCTg                                                 >  4:279294/1‑200 (MQ=255)
                                                                                                                                                   aCATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGCGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGaa                                                                                                 >  3:28047/1‑150 (MQ=255)
                                                                                                                                                   aCATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTaa                                                                                                                                                            <  1:313677/91‑1 (MQ=255)
                                                                                                                                                   aCATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTaa                                                                                                                                                            >  2:313667/1‑91 (MQ=255)
                                                                                                                                                   aCATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGcc                                                                                                                      >  3:857739/1‑129 (MQ=255)
                                                                                                                                                   aCATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATAAACGTCTGtt                                               >  4:569942/1‑200 (MQ=255)
                                                                                                                                                     aTAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCctgct                                                                                                                 <  2:28864/132‑1 (MQ=255)
                                                                                                                                                     aTAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACg                                                                                               <  3:765744/150‑1 (MQ=255)
                                                                                                                                                       aaTCAA‑GAAAAGTCAAGAGAGGGCAGAGATCATGGAGGCAGGATAAAAGGAGGGCATCAGGCAAAAAGGAAACAACGAGTACAGGAAGGAGCGAAATGAGGGACGGCATCCACGCAGTGCAGGCCCTGCTgg                                                                                                               <  2:295839/132‑1 (MQ=255)
                                                                                                                                                         tCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAg                                                                                                             <  2:466932/132‑1 (MQ=255)
                                                                                                                                                         tCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAg                                                                                                             <  2:519548/132‑1 (MQ=255)
                                                                                                                                                         tCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAg                                                                                                             <  2:591817/132‑1 (MQ=255)
                                                                                                                                                         tCAC‑GCAAATTCAATATATAGCAGGGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTgggg                                                                                                             <  2:196921/132‑3 (MQ=255)
                                                                                                                                                                 gaTTCAGTATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCTTCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTTCAGGCCCTGCTGGGGCGCGCCCCTAAGCGTTTTCAGGAAg                                                                                    <  3:30411/149‑1 (MQ=39)
                                                                                                                                                                  aTTTAATATATTGCAGAGATCATTTAGGGCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGAGTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGcccc                                                                                                     <  2:68431/132‑1 (MQ=255)
                                                                                                                                                                   ttCAATATGTTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAAc                                                                                                <  3:560339/136‑1 (MQ=255)
                                                                                                                                                                   ttCAATATGTTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAAc                                                                                                >  4:560381/1‑136 (MQ=255)
                                                                                                                                                                   ttCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATAAACg                                                     >  4:239641/1‑179 (MQ=255)
                                                                                                                                                                       atatatTGCAGAGATCATGTAGACCGGATAAACGTAGTGCATCGGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAGTGATTTACGGCATCCACGCAGTGCAGGCGCTGCTGGAGCGCGCCCCTGAAc                                                                                                <  2:618630/132‑1 (MQ=255)
                                                                                                                                                                         atatTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCACAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATAAACGTCTGTTACCGCTGATTCACGCCCTTGa                          >  4:652468/1‑200 (MQ=255)
                                                                                                                                                                         atatTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTAtt                                                                            >  3:437994/1‑150 (MQ=255)
                                                                                                                                                                              gCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCGAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTaaa                                                                       >  3:794165/1‑150 (MQ=255)
                                                                                                                                                                              gCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCa                                                                                         >  2:122850/1‑132 (MQ=255)
                                                                                                                                                                                  agaTCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGc                                                                   <  3:280787/150‑1 (MQ=255)
                                                                                                                                                                                   gaTCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATAAACGTCTGTTACCGCTGATTCACGCCCTTGAGTCTCAGGGc                >  4:782066/1‑200 (MQ=255)
                                                                                                                                                                                    aTCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCg                                                                 >  3:620511/1‑150 (MQ=255)
                                                                                                                                                                                      cATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATAAACGTCTGTTACCGCTGATTCACGCCCTTGAGTCTCAGGGCGTg             >  4:670019/1‑200 (MQ=255)
                                                                                                                                                                                       aTGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGCACGTTTTCAGGAAGTCtt                                                                                >  2:619957/1‑132 (MQ=255)
                                                                                                                                                                                       aTGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTaaa                                                                       >  1:62949/1‑141 (MQ=255)
                                                                                                                                                                                         gTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAg                                                                     <  1:493244/141‑1 (MQ=255)
                                                                                                                                                                                            ggCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGcc                                                                  >  1:232286/1‑141 (MQ=255)
                                                                                                                                                                                               cGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATAAACGTCTGTTACCGCTGATTCACGCCCTTGAGTCTCAGGGCGTGGTTATCCAg    <  4:468141/200‑1 (MQ=255)
                                                                                                                                                                                                 gATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGTCCTGCTGGAGCGCGCCTCTGAACGTTCTCAGGAAGTCTTTATTTTAAAAGGCCGTGaa                                                             >  1:55557/1‑141 (MQ=255)
                                                                                                                                                                                                 gATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGaa                                                             >  1:440389/1‑141 (MQ=255)
                                                                                                                                                                                                 gATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATAAACGTCTGTTACCGCTGATTCACGCCCTTGAGTCTCAGGGCGTGGTTATCCAGtt  >  4:125573/1‑200 (MQ=255)
                                                                                                                                                                                                      |                                                                                                                                                                                                  
GAAAATAGCTGCAGCGACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGATCAATACCCTCTTTAAAAGAAGAGGGTTAGATTGCTGACAAAATGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATAATCAC‑GCAAATTCAATATATTGCAGAGATCATGTAGGCCGGATAAACGTAGTGCATCAGGCAAAACGTAAACAACGAGTACATTAATGAGCGAAATGATTTACGGCATCCACGCAGTGCAGGCCCTGCTGGAGCGCGCCCCTGAACGTTTTCAGGAAGTCTTTATTTTAAAAGGCCGTGAAGATAAACGTCTGTTACCGCTGATTCACGCCCTTGAGTCTCAGGGCGTGGTTATCCAGTT  >  NC_000913/4409038‑4409429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.