Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2106561	2106991	431	36 [30]	[23] 31	wbbH	O‑antigen polymerase

CGACATAGAGACTCCACCTGTTAATAGCCCCATCAGCCTTTCAAAAAACCAAAAGACATGAGAACTGGCAGAGTTAGATACTTGCTGAAAATAAAACTCCTGAAACGCGATTATAGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAACACCTACAGCTGTAATAAGATAAACATAATGTTTTACTCTATTAACACCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTA  >  NC_000913/2106363‑2106700                                                                                                                                                                                                      |                                                                                                                                             cGACATAGAGACTCCACCTGTTAATAGCCCCATCAGCCTTTCAAAAAACCAAAAGACATGAGAACTGGCAGAGTTAGATACTTGCTGAAAATAAAACTCCTGAAACGCGATTATAGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAacac                                                                                                                                            <  2:651599/200‑1 (MQ=255) cGACATAGAGACTCCACCTGTTAATAGCCCCATCAGCCTTTCAAAAAACCAAAAGACATGAGAACTGGCAGAGTTAGATACTTGCTGAAAATAAAACTCCTGAAACGCGATTATAGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAacac                                                                                                                                            <  2:508411/200‑1 (MQ=255)         agaCTCCACCTGTTAATAGCCCCATCAGCCTTTCAAAAAACCAAAAGACATGAGAACTGGCAGAGTTAGATACTTGCTGAAAATAAAACTCCTGAAACGCGATTATAGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAACACCTACAGCt                                                                                                                                    <  2:468177/200‑1 (MQ=255)                 ccTGTTAATAGCCCCATCAGCCTTTCAAAAAACCAAAAGACATGAGAACTGGCAGAGTTAGATACTTGCTGAAAATAAAACTCCTGAAACGCGATTATAGGGCTGACCAAATACATGGATAGATAATATGCAATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAACAcc                                                                                                                                           >  2:221441/1‑185 (MQ=255)                  cTGTTAATAGCCCCATCAGCCTTTCAAAAAACCAAAAGACATGAGAACTGGCAGAGTTAGATACTTGCTGAAAATAAAACTCCTGAAACGCGATTATAGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAACACCTACAGCTGTAATAAGa                                                                                                                           <  2:642050/200‑1 (MQ=255)                    gTTAATAGCACCATCAGCCATTCAAAAAACCAAAAGACATAAGAACTGGCAGAGTTAGATACTTGCTGAAAATAAAACTCCTGAAACGCGATTATAGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAACACCTACAGc                                                                                                                                     <  2:149941/188‑1 (MQ=255)                                                 ccAAAAGACATGAGAACTGGCAGAGTTAGATACTTGCTGAAAATAAAACTCCTGAAACGCGATTATAGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAac                                                                                                                                              <  4:441883/150‑1 (MQ=255)                                                    aaaGACATGAGAACTGGCAGAGTTAGATACTTGCTGAAAATAAAACTCCTGAAACGCGATTATAGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAACAcc                                                                                                                                           <  4:221424/150‑1 (MQ=255)                                                          aTGAGAACTGGCAGAGTTAGATACTTGCTGAAAATAAAACTCCTGAAACGCGATTATAGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAac                                                                                                                                              <  1:150522/141‑1 (MQ=255)                                                             agaACTGGCAGAGTTAGATACTTGCTGAAAATAAAACTCCTGAAACGCGATTATAGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAac                                                                                                                                              <  4:83564/138‑1 (MQ=255)                                                             agaACTGGCAGAGTTAGATACTTGCTGAAAATAAAACTCCTGAAACGCGATTATAGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAac                                                                                                                                              >  2:83572/1‑138 (MQ=255)                                                                   ggCAGAGTTAGATACTTGCTGAAAATAAAACTCCTGAACCGCGATTATAGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAACACCTACAGc                                                                                                                                     <  1:509939/141‑1 (MQ=255)                                                                    gCAGAGTTAGATACTTGCTGAAAATAAAACTCCTGAAACGCGATTATAGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAACACCTACAGCTGTAATAAGa                                                                                                                           <  4:629890/150‑1 (MQ=255)                                                                           tAGATACTTGCTGAAAATAAAACTCCTGAAACGCGATTATAGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAACACCTACAGCTGTAATAAGATAAACAt                                                                                                                    <  4:40747/150‑1 (MQ=255)                                                                             gATACTTGCTGAAAATAAAACTCCTGAAACGCGATTATAGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAACACCTACAGCTGTAATAAGa                                                                                                                           <  1:243535/141‑1 (MQ=255)                                                                             gATACTTGCTGAAAATAAAACTCCTGAAACGCGATTATAGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAACACCTACAGCTGTAATAAGa                                                                                                                           <  1:462183/141‑1 (MQ=255)                                                                                   tGCTGAAAATAAAACTCCTGAAACGCGATTATAGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAACACCTACAGCTGtaata                                                                                                                              <  3:354955/132‑1 (MQ=255)                                                                                   tGCTCAAAATAAAACTCCTGAAACGCGATTATAGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAACACCTACAGCTGtaata                                                                                                                              <  3:420259/132‑1 (MQ=255)                                                                                    gCTGAAAATAAAACTCCTGAAACGCGATTATAGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAACACCTACAGCTGTAATAAGATAAACAt                                                                                                                    <  1:399586/141‑1 (MQ=255)                                                                                    gCTGAAAATAAAACTCCTGAAACGCGATTATAGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAACACCTACAGCTGTAATAAGATAAACAt                                                                                                                    <  1:444027/141‑1 (MQ=255)                                                                                      tGAAAATAAAACTCCTGAAACGCGATTATAGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAACACCTACAGCTGTAATAAGa                                                                                                                           <  3:233538/132‑1 (MQ=255)                                                                                             aaaaCTCCTGAAACGCGATTATAGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAACACCTACAGCTGTAATAAGATAAACAt                                                                                                                    <  3:33909/132‑1 (MQ=255)                                                                                                              aTTATAGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAac                                                                                                                                              >  2:202490/1‑89 (MQ=255)                                                                                                              aTTATAGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAac                                                                                                                                              <  4:202478/89‑1 (MQ=255)                                                                                                                  taGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAACACCTACAGCTGTAATAAGTTAATCATAATGTTTTACTCTATTAacac                                                                                               <  3:101214/132‑1 (MQ=255)                                                                                                                         gACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAACACCTACAGCTGtaata                                                                                                                              >  4:524849/1‑94 (MQ=255)                                                                                                                         gACCAAATACATGGATAGATAATATGCCATCCACCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAACACCTACAGCTGtaata                                                                                                                              <  2:524909/94‑1 (MQ=255)                                                                                                                                          gataATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAACACCTACAGCTGTAATAAGATAAACATAATGTTTTACTCTATTAACACCTACGATGAATGCATAag                                                                             <  2:50456/126‑1 (MQ=255)                                                                                                                                          gataATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAACACCTACAGCTGTAATAAGATAAACATAATGTTTTACTCTATTAACACCTACGATGAATGCATAag                                                                             >  4:50453/1‑126 (MQ=255)                                                                                                                                                                       cGTAAAAAGAGCATATACAAGGAGAATAGAACACCTACAGCt                                                                                                                                    >  2:369730/1‑42 (MQ=255)                                                                                                                                                                       cGTAAAAAGAGCATATACAAGGAGAATAGAACACCTACAGCt                                                                                                                                    <  4:369680/42‑1 (MQ=255)                                                                                                                                                                                 gCATATACAAGGAGAATAGAACACCTACAGCTGTAATAAGa                                                                                                                           >  1:46403/1‑41 (MQ=255)                                                                                                                                                                                 gCATATACAAGGAGAATAGAACACCTACAGCTGTAATAAGa                                                                                                                           <  3:46397/41‑1 (MQ=255)                                                                                                                                                                                        cAAGGAGAATAGAACACCTACAGCTGTAATAAGATAAACATAATGTTTTACTCTATTAACACCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATAc                <  1:441294/141‑1 (MQ=255)                                                                                                                                                                                           ggAGAATAGAACACCTACAGCTGTAATAAGATAAACATAATGTTTTACTCTATTAACACCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACaag    >  4:71289/1‑150 (MQ=255)                                                                                                                                                                                                      cacCTACAGCTGTAATAAGATAAACATAATGTTTTACTCTATTAACACCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACaagta  <  1:421180/141‑1 (MQ=255)                                                                                                                                                                                                      |                                                                                                                                             CGACATAGAGACTCCACCTGTTAATAGCCCCATCAGCCTTTCAAAAAACCAAAAGACATGAGAACTGGCAGAGTTAGATACTTGCTGAAAATAAAACTCCTGAAACGCGATTATAGGGCTGACCAAATACATGGATAGATAATATGCCATCCCCCCAGGCAGTCCACGTAAAAAGAGCATATACAAGGAGAATAGAACACCTACAGCTGTAATAAGATAAACATAATGTTTTACTCTATTAACACCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTA  >  NC_000913/2106363‑2106700

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.