| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2106561 | 2106991 | 431 | 36 [30] | [23] 31 | wbbH | O‑antigen polymerase |
AGCCTACATTATGCACTTTCTTCGATGGTATGCTATAAATAGCATTATTGACTTTTCTGATATTTAGATCTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATCCCAATAAGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGC > NC_000913/2106923‑2107190 | aGCCTACATTATGCACTTTCTTCGATGGTATGCTATAAATAGCATTATTGACTTTTCTGATATTTAGATc < 2:342920/70‑1 (MQ=255)aGCCTACATTATGCACTTTCTTCGATGGTATGCTATAAATAGCATTATTGACTTTTCTGATATTTAGATc > 4:342870/1‑70 (MQ=255)aGCCTACATTATGCACTTTCTTCGATGGTATGCTATAAATAGCATTATTGACTTTTCTGATATTTAGATCTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAg > 1:222742/1‑141 (MQ=255)aGCCTACATTATGCACTTTCTTCGATGGTATGCTATAAATAGCATTATTGACTTTTCTGATATTTAGATCTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTa > 4:383081/1‑150 (MQ=255) ataAATAGCATTATTGACTTTTCTGATATTTAGATCTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATTTGACGt > 1:282419/1‑141 (MQ=255) aaaTAGCATTATTGACTTTTCTGATATTTAGATCTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc > 4:585240/1‑150 (MQ=255) aaaTAGCATTATTGACTTTTCTGATATTTAGATCTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATCCCAATAAGACCAGTGCGAAGATGATATTAACGCATAc < 2:585304/187‑1 (MQ=255) ttattGACTTTTCTGATATTTAGATCTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGGCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATCCCAATAAGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAATATATCctt > 2:385592/1‑200 (MQ=255) atTTAGATCTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATCCCAATAAGACCAGTGCGAAga > 4:424237/1‑146 (MQ=255) atTTAGATCTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATCCCAATAAGACCAGTGCGAAga < 2:424290/146‑1 (MQ=255) aGATCTACTACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATCCCAATAAGAcc < 3:282403/132‑1 (MQ=255) gATCTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCatatata > 1:272680/1‑101 (MQ=255) gATCTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCatatata < 3:272665/101‑1 (MQ=255) gATCTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGCCGTTATTTCATATCCCAATAAGAc > 2:617196/1‑130 (MQ=255) gATCTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATCCCAATAAGAc < 4:617130/130‑1 (MQ=255) gATCTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATCCCAATAAGAc > 4:504450/1‑130 (MQ=255) gATCTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATCCCAATAAGAc < 2:504510/130‑1 (MQ=255) aTCTAATACACTTTCCGTCAATAAACCTGACAGGGTAANNGTCAAAACNTNNNNAAGTAGAAAAATNNACGTAGCGTCATTTAATTGAAAAGTATATATATCTGACGTTTTTTCCTATCCCAATAAGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAATCTATCCTTCTTAAGAtatataaagctannnn > 2:18814/1‑188 (MQ=255) aTCTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGaaaaa > 2:596711/1‑65 (MQ=255) aTCTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGaaaaa < 4:596647/65‑1 (MQ=255) aTCTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACg > 3:405336/1‑107 (MQ=255) aTCTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACg < 1:405356/107‑1 (MQ=255) tCTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGAATATATATCTGACGTTATTTCATATCCCAATAAGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGc < 2:383131/200‑1 (MQ=255) cTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCatatata < 2:583301/98‑1 (MQ=255) cTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCatatata > 4:263491/1‑98 (MQ=255) cTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCatatata < 2:263518/98‑1 (MQ=255) cTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCatatata > 4:583237/1‑98 (MQ=255) cTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATCCCAATAAGACCAGTGCGAAgatga > 1:125951/1‑141 (MQ=255) cTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATCCCAATAAGACCAGTGCGAAga > 4:235457/1‑138 (MQ=255) cTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATCCCAATAAGACCAGTGCGAAga < 2:235477/138‑1 (MQ=255) cTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATCCCAATAAGACCAGTGCGAAGATGATATTAACGCATACGGCTGGTTAAAATATATCCTTCTTAAg > 2:445386/1‑181 (MQ=255) | AGCCTACATTATGCACTTTCTTCGATGGTATGCTATAAATAGCATTATTGACTTTTCTGATATTTAGATCTAATACACTTTCCGTCAATAAACATGACAGGGTAAATGTCAAAACATTGCAAAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATCCCAATAAGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGC > NC_000913/2106923‑2107190 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |