Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4251385	4251993	609	33 [30]	[25] 31	yjbI	pseudogene, SopA‑related, pentapeptide repeats‑containing

ACACAATGTGATTTTTATCAAAGCGAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTTGATTATGTGCGAATGTCGACAGGGAATTTTAAAGATTGCATTACAGAACAATTGGAATTAACTATTGATTATTCAGATA  >  NC_000913/4251185‑4251498                                                                                                                                                                                                        |                                                                                                                   acacAATGTGATTTTTATCAAAGCGAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAatat                                                                                                                    <  2:277747/200‑1 (MQ=255)      aTGTGATTTTTATCAAAGCGAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCAttt                                                                                                               >  2:286591/1‑200 (MQ=255)                          aGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGc                                                                                           >  2:638394/1‑200 (MQ=255)                                 aaTGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAACAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATg                                                                                    <  2:350655/200‑1 (MQ=255)                                                     aaTATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCa                                                                                                                  <  4:87067/150‑1 (MQ=255)                                                     aaTATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCa                                                                                                                  <  4:51197/150‑1 (MQ=255)                                                     aaTATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCa                                                                                                                  <  4:119750/150‑1 (MQ=255)                                                            ttGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTTGATTATGTGCGAATGTCGACAggg                                                         <  2:448138/200‑1 (MQ=255)                                                              gATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCa                                                                                                                  <  1:539860/141‑1 (MQ=255)                                                                     ttGACTTCTCGCAGAGTCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATttatta                                                                                                           <  1:105588/141‑1 (MQ=255)                                                                       gACTTCTCGCAGAGTCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCa                                                                                                                  <  3:165312/132‑1 (MQ=255)                                                                       gACTTCTCGCAGAGTCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCa                                                                                                                  <  3:122198/132‑1 (MQ=255)                                                                                  gagTCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTTGATTATGTGCGAATGTCGACAGGGAATTTTAAAGATTGCATTACAg                                   <  2:414735/200‑1 (MQ=255)                                                                                   agTCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCa                                                                                                                  >  4:102748/1‑120 (MQ=255)                                                                                   agTCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCa                                                                                                                  <  2:102756/120‑1 (MQ=255)                                                                                         cTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTTGAt                                                                              <  4:286564/150‑1 (MQ=255)                                                                                                   gTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTa                                                                                      <  3:93117/132‑1 (MQ=255)                                                                                                       ttttCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGtt                                                                                  <  3:518685/132‑1 (MQ=255)                                                                                                            gcgAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTTGATTATGTGCGAATGTCGACAGGGAATTTTAAAGATTGCATTACAGAACAATTGGAATTAACTATTGattat         <  2:425393/200‑1 (MQ=255)                                                                                                                              aTTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTTGATTATGTGCGAATGTCGACAg                                                           <  3:21860/132‑1 (MQ=255)                                                                                                                                       tCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTTGATTATGTGCGAATGTCGACAGGGAATTTTAAAGATTGCATTACAGAAc                                <  4:638328/150‑1 (MQ=255)                                                                                                                                         gATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTTGATTATGTGCGAATGTCGACAGGGAATTTTAAAGATTGCAtt                                       <  1:477829/141‑1 (MQ=255)                                                                                                                                                    tCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGc                                                                                           <  3:501138/78‑1 (MQ=255)                                                                                                                                                    tCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGc                                                                                           >  1:501170/1‑78 (MQ=255)                                                                                                                                                    tCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTTGATTATGTGCGAATGTCGACAGGGAATTTTAAAGATTGCATTAc                                     <  3:256514/132‑1 (MQ=255)                                                                                                                                                            cTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAatat                                                                                                                    >  3:508608/1‑45 (MQ=255)                                                                                                                                                            cTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAatat                                                                                                                    <  1:508640/45‑1 (MQ=255)                                                                                                                                                                   cTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATg                                                                                    >  3:277217/1‑70 (MQ=255)                                                                                                                                                                   cTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATg                                                                                    <  1:277233/70‑1 (MQ=255)                                                                                                                                                                      cACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTTGATTATGTGCGAATGTCGACAGGGAATTTTAAAGATTGCATTACAGAACAATTGGAATTAAc                   <  3:430295/132‑1 (MQ=255)                                                                                                                                                                           gagcagagTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTTGATTATGTGCGAATGTCGACAgg                                                          >  3:64010/1‑88 (MQ=255)                                                                                                                                                                           gagcagagTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTTGATTATGTGCGAATGTCGACAgg                                                          <  1:64017/88‑1 (MQ=255)                                                                                                                                                                              cagagTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTTGATTATGTGCGAATGTCGACAGGGAATTTTAAAGATTGCATTACAGAACAATTGGAATTAACTATTGATTATTCAGata  <  1:192285/141‑1 (MQ=255)                                                                                                                                                                                                        |                                                                                                                   ACACAATGTGATTTTTATCAAAGCGAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTTGATTATGTGCGAATGTCGACAGGGAATTTTAAAGATTGCATTACAGAACAATTGGAATTAACTATTGATTATTCAGATA  >  NC_000913/4251185‑4251498

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.