BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	76896 =	2169 (0.850)	362 (0.160)	134/226	12.4	16.4%	intergenic (‑145/+40)	JCVSYN2_00300/JCVSYN2_00305	UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein
*	?	CP016816	= 76892	1753 (0.760)	362 (0.160)	134/226	12.4	16.4%	intergenic (‑141/+44)	JCVSYN2_00300/JCVSYN2_00305	UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 2345 total aligned reads displayed.

AAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATCTT  >  CP016816/76765‑77019

 aaTTTATATATATTAGTGTACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑t                                                                                                                                <  2:622554/128‑1 (MQ=255)

 aaTTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑t                                                                                                                                >  1:4163732/1‑128 (MQ=255)

   tttATATATATTAGTTAACTTAAGGATGTATAATACAAATTAATAATAACTTTACAAACCAAATT‑CCCCTTTAAATTAAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑ttt                                                                                                                              <  1:2141248/128‑1 (MQ=255)

   tttATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑ttt                                                                                                                              >  1:4932670/1‑128 (MQ=255)

     ttaatatatTATTGTACTTAATGATGTTTAATACAAATTAAAAATAACTGTACAACCCAAATT‑CCCCTTTAAATTAAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑ttttt                                                                                                                            <  1:4287969/125‑1 (MQ=255)

        atatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑tttttttt                                                                                                                         <  2:885910/128‑1 (MQ=255)

          atatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑tttttttttt                                                                                                                       >  1:4639455/1‑128 (MQ=255)

          atatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTAAAA‑‑C‑‑tttttttttt                                                                                                                       >  2:4566780/1‑128 (MQ=255)

          atatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTATAAAG‑AAAAATATTACAA‑‑C‑‑tttttttttt                                                                                                                       >  1:3443232/1‑128 (MQ=255)

          atatTAGTGAAATTAATGATTTATAAAAAAAAATAAAAAAAAATTTACAACCCAAAAT‑CCCCTTTAAATTCAAATAACATTATATAAA‑TA‑TAAATTTTTTAAAC‑AAAAATATTACAA‑‑C‑‑tttttttttt                                                                                                                       <  2:5125463/128‑1 (MQ=255)

            atTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑tttttttttttt                                                                                                                     >  2:358044/1‑128 (MQ=255)

             ttAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATT‑CCACTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑ttttttttttttt                                                                                                                    >  1:1538565/1‑128 (MQ=255)

             ttAGTGAACTTAAGGATGTATAATAC‑AATTAATAATAACTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑tttttttttttttt                                                                                                                   >  2:4305683/1‑128 (MQ=255)

                 tcaaattAACGATTTATAAAAAAAATTAATAATAACATTACAACCCAAATT‑ACCCTTTAAATTCAAATAACATTATATAAA‑TA‑TAAATTTTTTAAAT‑AAAAATATTACAA‑‑C‑‑ttttttttttttttttt                                                                                                                <  2:3008932/123‑2 (MQ=255)

                    aCTTAATTATGTATAAAAAAAATTAAAAATAACTGTAAAACCCAAATT‑ACCCTTTAAATTAAAATAAAATTAAATAAA‑TA‑TAAATTTTTTAAAT‑AAAAATATTACAA‑‑A‑‑TTTTTTTTTTTTTTTTGGaa                                                                                                             <  2:1243943/128‑1 (MQ=255)

                    aCTTAAGGATGTATAATACAAATTAAAAAAAACTGTACAAACCAAATT‑CCACTTTAAATTCAAATAACATTATATAAA‑TA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑ttttttttttttttggaact                                                                                                             <  1:3662644/128‑7 (MQ=255)

                     cTTAAGGAAGTATAATACAAATTAATAAAAACTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTAAATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACt                                                                                                           <  1:4037640/128‑1 (MQ=255)

                     attaagttagTAAAATATAAAATAATAATAACTTTAAAAACAAAATT‑AACCTTTAAATTAAAATAACATTATATTAA‑TT‑TAAATTTTTTAAAT‑TAAAATTTTAAAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACt                                                                                                           <  1:5452845/119‑1 (MQ=255)

                       tAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATT‑CCCCTTTAAAATAAAATAACATTAAATAAA‑TA‑TAAATTTTTTAAAC‑AAAAATATTACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTaa                                                                                                         <  1:4555467/128‑1 (MQ=255)

                        aaGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑tttttttttttttttttaaaaaaa                                                                                                         >  1:1112371/1‑120 (MQ=255)

                         aGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑ttttttttttttttttaaataacat                                                                                                        >  2:4477351/1‑119 (MQ=255)

                         aGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTT‑GAACTAACa                                                                                                       >  2:806132/1‑128 (MQ=255)

                          ggATGTATAATACAAATTAATAATAACTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACat                                                                                                      >  2:4893238/1‑128 (MQ=255)

                              ttattatACAAATTAATTATAACTTTAAAAACAAAATT‑CCCCTTTAAAATCAATTAACAATTTAAAAA‑TA‑TAAATTTTTTAAAT‑AAAAATATTA‑AA‑‑A‑‑ATTTTTTTTTTTTTTTGGAACTAACATATaa                                                                                                  <  2:2550437/127‑1 (MQ=255)

                              gTATAATACAAATTAATAATAACTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTT‑AAAATAAAATATaa                                                                                                  >  1:2524337/1‑128 (MQ=255)

                              gTATAATACAAATTAATAATAACTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGTAACTAACATATaa                                                                                                  >  1:326893/1‑128 (MQ=255)

                               tataATACAAATTAATAATAACTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTT‑TAACTAAAATATAAt                                                                                                 >  1:854134/1‑128 (MQ=255)

                                ataataCAAATTAATAATAACTGTACAACACAAATT‑CACCTTTAAATTAAAATAAAATTATATAAA‑TA‑TAAATTTTTTAAAG‑AAAAATATTAAAA‑‑‑‑‑‑ATTTTTTTTTTTTTTGGAACTAACATATAAttt                                                                                               <  2:1457884/128‑1 (MQ=255)

                                 taataaAAATTAAAAATAATATTACAACCAAAATT‑CCCCATTAAATTAAAATAACATTATAAAAA‑TA‑TAAATTTTTTAAAT‑AAAAATATTACAA‑‑‑‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAAttt                                                                                               <  1:1624805/128‑1 (MQ=255)

                                 aaataCAAATTAATAAAAACTGAACAACCCAAATT‑CCCATTTAAATTCAAAAAAAATTATATAAA‑TA‑AAAATTTTTTAAAT‑AAAAATATTAAAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAAtt                                                                                                <  2:1641993/127‑1 (MQ=255)

                                  aataCAAATTAATAATAACTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑TTTTTTTTTATTTTTT‑TAACAAACAAATAAttta                                                                                              >  1:2260676/1‑127 (MQ=255)

                                  aataCAAATTAATAAAAAATGTAAAACCAAAATT‑CCCCTTTAAATTCAAATAAAATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTa                                                                                             <  2:343925/128‑1 (MQ=255)

                                   ataCAAATTAATAATAACTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTTAAAAAAAAAAATAAttta                                                                                              >  1:1003459/1‑127 (MQ=255)

                                   ataCAAATTAATAATAACTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAAAATAAAATTTTa                                                                                             >  2:1951214/1‑128 (MQ=255)

                                   aaaaaaaataaaaataACTTTAAAACCAAAATT‑ACACTTTAAATTAAAATAAAATTATATAAA‑TA‑TAAATTTTTTAAAT‑AAAAATATTA‑AA‑‑A‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTa                                                                                             <  2:2737359/124‑1 (MQ=255)

                                    tatcaaTTAAAAAATAATGTACAACAAAAAAT‑ACAATTTTAATTAAAATAAAATTTTATTAA‑TT‑TAATATATTTAAAT‑AAAAATATTACAA‑‑C‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTAcc                                                                                           <  1:391244/124‑1 (MQ=255)

                                        aaTTAATAATAACTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGTAAATAA‑ATTTAATTTTACCCat                                                                                        >  2:2894963/1‑128 (MQ=255)

                                         ataaaaaataaCTGTACAACCCAAATA‑ACCCTTTAAATTCAAAAAACATTATATAAA‑GA‑TAAATTTTTTAAAT‑AAAAATATTAAAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAat                                                                                        <  1:1346486/122‑1 (MQ=255)

                                         aTTAATAATAACTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGTAAATAACATAAAATTTTAACAatt                                                                                       >  2:4812135/1‑128 (MQ=255)

                                         aTTAATAATAACTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑TTTTTTTTTTATTTTGGAACTAACTAAAAATATAACCAatt                                                                                       >  2:422064/1‑128 (MQ=255)

                                            aaatataaCTTTAAAACCTAATTT‑CACTATTAAATTAAAAAAAAATTTATTAAA‑TA‑TAAATTTTTTAAAT‑AAAAAAATTACAA‑‑‑‑‑‑ATTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAattatga                                                                                   <  1:5320777/124‑3 (MQ=255)

                                             ataataaCTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑TTTTTTTGTTTTTTTTGGCACTAACATAATATTATACCAattatt                                                                                    >  1:2949831/1‑128 (MQ=255)

                                             ataataaCTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGTAAATAACAAATAATTTTACAAAttatta                                                                                   >  2:3268313/1‑128 (MQ=255)

                                             ataataaCTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAg                                                                                  >  2:184820/1‑128 (MQ=255)

                                             ataataaCTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑‑‑‑TTTTTTTTTTTTGTAAATAAAATATAATTTTACCAACAATTAGaa                                                                                >  2:4049540/1‑128 (MQ=255)

                                             ataaaaaATTTAAAAACCAAATT‑ACCATTTAAATTAAAATAAAATTATATAAA‑AT‑TAAATTTTTTTAAT‑AAAAATATTA‑AA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAAttatta                                                                                   <  2:5394255/128‑1 (MQ=255)

                                              taataaCTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑TTTATTTTTTTTTTTTGTAAATAACATATAATTTTACCAAttatta                                                                                   >  1:5057619/1‑128 (MQ=255)

                                              taataaCTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAAAATATAATTTTACAAAatattat                                                                                  >  1:2345047/1‑127 (MQ=255)

                                              aaataaATTTACAAAACAAATTACCAATTTAATTTAAAATAA‑ATTATATAAA‑TA‑TAAAATTTATAAAT‑AAAAAAATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAAttatta                                                                                   <  1:2430162/127‑1 (MQ=255)

                                               aataaCTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTT‑‑GAAATAACATATAATTTTACCAATTATTaaaa                                                                                >  1:2827059/1‑128 (MQ=255)

                                               aataaCTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑TTTTTTTTTTTTTTGGGAAGTAAAATATAA‑TTTACCAatttttttga                                                                                >  2:69100/1‑124 (MQ=255)

                                                  aaCTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGTAAATAAAATATAATTTTAACAATAATTAAaatt                                                                              >  1:27243/1‑128 (MQ=255)

                                                   tatGTACAACTCAAATT‑AATATTTAAATTCAAATAACTTTATTTTAA‑TA‑TAAATTTTTTAAAT‑AAAAATTTTACAA‑‑C‑‑‑‑‑‑TTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaa                                                                          <  1:2610978/126‑1 (MQ=255)

                                                     tttACAAACCAAATT‑ACCCTTTAATTTTAAATAACATTATTTAAA‑TA‑TAAATTTTTTAAAT‑ATAATTATTA‑AA‑‑A‑‑ATTTTTTTTATTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttca                                                                           <  1:3182880/126‑1 (MQ=255)

                                                     tGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTT‑GCACTAACAAAAAATTTTACAAATTTTTAAaatttac                                                                           >  1:5242525/1‑126 (MQ=255)

                                                     tGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑TTATTTTTTTTTTTTAAAACTAACATATATTTTTACCTATTATTATattttaa                                                                           >  2:2656629/1‑126 (MQ=255)

                                                             ccAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAAATAACAAATATTTTTACCAATTATTAGaatttaaatttccc                                                                    >  2:5503415/1‑126 (MQ=255)

                                                             ccAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGTAACTAACATATAATTTTACCAATTATTATAATTTAAATTTcaca                                                                   >  2:3805882/1‑128 (MQ=255)

                                                                aaTT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑‑TTTTTTTTTTTTTTGGAACTAAAATATAATTTTACCAATTATTAGAATTAAAATTTAACAGATg                                                               >  1:3554833/1‑128 (MQ=255)

                                                                aaTT‑CCAATTTAAATTAAAATAACATTTTATAAA‑TA‑TAAATTTTTTAAAT‑AAAAATATTAAAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGa                                                                 <  2:4738609/128‑1 (MQ=255)

                                                                aaTT‑ACCCTTTTAATTTAAATAAAATTATTTAAA‑TA‑TAAATTTTTTAAAT‑AAAAATTTTTCAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGAt                                                                <  1:3044268/128‑1 (MQ=255)

                                                                 aTT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATTTAATTTTACCAATTATTAGAATTTAAATTTCACagaaga                                                              >  1:1456639/1‑128 (MQ=255)

                                                                  atacccaTTAAAATTAAATAAAAATTATA‑AAA‑CA‑TAAAATTTTTAAA‑‑AAAAAAATAATAA‑‑A‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGa                                                              <  1:4751562/125‑1 (MQ=255)

                                                                   ttacacTTTTAATTAAAATAACATTTTATAAA‑TA‑TAAATTTTTTAAAT‑AAAAATATTAAAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGa                                                              <  1:3339723/123‑1 (MQ=255)

                                                                   ttaaacTTTATATTAATATAAAATTTTATAAATTA‑TAAA‑TTTTTAAAT‑AAAAATAATAAAAATT‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGa                                                                 <  2:3118743/123‑1 (MQ=255)

                                                                      ccatttAAAATAAAATAAAATTATATAAA‑TA‑AAAAATTTTTAAAT‑TAAAATATTTCAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAAt                                                            <  1:1953663/125‑1 (MQ=255)

                                                                        cTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑‑TTTTTTTTTTTTTTGGAAATAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAt                                                        >  1:5153456/1‑128 (MQ=255)

                                                                        attttAATTAAAAAAAAATTTATTAAA‑TA‑AAAATTTTTTAAAT‑AAAATTATTA‑AA‑‑T‑‑TTTTTTTTTTTTTTTTGTAAATAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGa                                                         <  2:2176746/127‑1 (MQ=255)

                                                                         tttAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTATAATTTAAATTTCACATATGAATTTAt                                                        >  2:3349452/1‑128 (MQ=255)

                                                                          ttaaattaaaATAAAATTATATTAA‑GA‑TAAATTTTTTATAT‑AAAAATATTACAA‑‑‑‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAtt                                                       <  1:1191568/128‑1 (MQ=255)

                                                                           ttaaTTTAAAAAACAATATATAAA‑TA‑TAAATTTTTTAAAG‑AAAAATATTAAAA‑‑C‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttc                                                     <  2:2292732/126‑1 (MQ=255)

                                                                           tAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAAAAAAAATATAATTTTAACAATAATTATAATTAAAATTAAACAGATAAATTTAtt                                                       >  2:5012694/1‑128 (MQ=255)

                                                                           tAAAATCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAT‑AAAAAAATTAAAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAttt                                                      <  1:4454121/128‑1 (MQ=255)

                                                                            aaaTTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACAAACATTTAATTTTACCAATTATTAGAATTTAAATTTCCCACATGAATTGATttc                                                     >  2:1134210/1‑128 (MQ=255)

                                                                            aaaTTCAAATAAAATTATATAAA‑TA‑TAAATTTTTTAAAT‑AAAAATATTACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttc                                                     <  1:635000/128‑1 (MQ=255)

                                                                             aaTTTAAAAAACAATATATAAA‑GA‑TAAAATTTTTAAAT‑AAAAATATTACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttct                                                    <  1:709810/128‑1 (MQ=255)

                                                                               ttaaaaTAAAATTATATAAA‑TA‑TAAATTTTTTAAAT‑AAAAATATTAAAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttctt                                                   <  1:5538028/125‑1 (MQ=255)

                                                                               ttCAAAAAAAAATATATAAA‑TT‑TAAATTTTTTATAGAAAAAAAATAAAAA‑‑T‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttct                                                    <  2:5322090/128‑1 (MQ=255)

                                                                                    aTAAAATTATATTTA‑TATTAATTTTTTTAATT‑AAAAATTTTATAA‑‑‑‑‑TTTTTTTTTTTTTTTT‑GTACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCtaata                                             <  1:2050592/128‑1 (MQ=255)

                                                                                      aaCATTTAATAAA‑GA‑TAAATTTTTTAAAT‑AAAAATATTAAAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTaataat                                           <  2:4141105/128‑1 (MQ=255)

                                                                                      aaCATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑‑TTTTTTTTTTTTTTGGAAATAACATATAATTTTACAAATTATTAAAATTTCAATTTAACAGATGAATTGATTAATTATAATAAtt                                          >  2:106910/1‑128 (MQ=255)

                                                                                       aCATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAAAAAATAATTTTACAAATTATTATAATTAAAATTTAAAATATTAATTTATTTCTAATAATAAtt                                          >  1:127413/1‑128 (MQ=255)

                                                                                          ttATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTAACATATTAATTTATTTATTATAATAATTTGt                                       >  2:1332942/1‑128 (MQ=255)

                                                                                            atataAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGTAACTAACATAAAATTTTACCAATTATTAGAATTTCAATTTCCAAGATGAATTGATTTCTTCAAATAATTTGACt                                     >  1:986618/1‑128 (MQ=255)

                                                                                             tataAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTAAAAGATGAATTGATTTCTTATAATAATTTGTCta                                    >  1:1805581/1‑128 (MQ=255)

                                                                                              ataAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACATATGAATTTATTTCTTCTAATAAttttaatat                                   >  1:4373525/1‑122 (MQ=255)

                                                                                               tttaatttttaaTTTTTTAAAT‑AAAAATTTTTAAA‑‑A‑‑‑‑‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtata                                  <  2:3924975/118‑1 (MQ=255)

                                                                                                aaa‑TA‑TAAATTTTTTAAAT‑AAAAATATTAAAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtata                                  <  1:799503/128‑1 (MQ=255)

                                                                                                   ata‑TAAATTTTTTAAAT‑TAAAATATTTAAA‑‑‑‑‑‑ATTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGa                              <  2:2055550/126‑1 (MQ=255)

                                                                                                   aatattaaTTTTTTAAAT‑AAAAATATTAAAA‑‑CTTTTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtat                                   <  1:4837946/122‑1 (MQ=255)

                                                                                                    ta‑TAAATTTTTTTAAT‑AAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAg                               <  1:1717992/127‑1 (MQ=255)

                                                                                                             ttttAAAT‑AAAAATATTA‑AA‑‑A‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtttttt                      <  2:3675962/128‑1 (MQ=255)

                                                                                                             ttttAAAG‑AAAAATATTACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAAAATTTCAATTTCACAGATGAATTGATTTGTTCTAAAAATTTGTATATATATATGtttttt                      >  2:4661412/1‑128 (MQ=255)

                                                                                                                tAAAG‑AAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAAATAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTtat                    >  1:1864206/1‑128 (MQ=255)

                                                                                                                tAAAG‑AAAAATATTACAA‑‑C‑‑‑‑‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTAATTTCTTCTAATAATTTTTCTATAAAGATGTTTTTtataaa                 >  2:5227713/1‑126 (MQ=255)

                                                                                                                       aaaaTATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATTAAATTTTACCATTTATTAGAATTTAAATTTCACAGATGAATTAATTTATTATAATAATTTTTGTATATTGATGTTTTTTTTATATaa              >  2:242483/1‑128 (MQ=255)

                                                                                                                       aaaaTATTACAA‑‑‑‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTaaa             <  1:376182/128‑1 (MQ=255)

                                                                                                                        aaaTATTAAAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAAt            <  2:1559864/128‑1 (MQ=255)

                                                                                                                          ttatTACAA‑‑C‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAg         <  2:4410855/127‑1 (MQ=255)

                                                                                                                            atTACAA‑‑A‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGt        <  2:1746318/128‑1 (MQ=255)

AAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATT‑CCCCTTTAAATTCAAATAACATTATATAAA‑GA‑TAAATTTTTTAAAG‑AAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATCTT  >  CP016816/76765‑77019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.