BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 34945	1126 (0.690)	439 (0.240) +AAA	87/214	21.9	26.2%	intergenic (+49/+117)	JCVSYN2_00105/JCVSYN2_00110	ABC transporter permease/cell division protein FtsH
*	?	CP016816	34946 =	1250 (0.670)	439 (0.240) +AAA	87/214	21.9	26.2%	intergenic (+50/+116)	JCVSYN2_00105/JCVSYN2_00110	ABC transporter permease/cell division protein FtsH
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1805 total aligned reads displayed.

CTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑G‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCTTT  >  CP016816/34818‑35073

  ttACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑G‑‑‑aa                                                                                                                                      >  1:1002043/1‑128 (MQ=255)

       tcttTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑G‑‑‑aaaa‑aaa                                                                                                                                >  2:2280601/1‑128 (MQ=255)

         tttATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑G‑‑‑aaaa‑aaaaa                                                                                                                              >  1:3124072/1‑128 (MQ=255)

           tATGATTTTCAACAAAAAGAGTAATAAAAGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAATATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑G‑‑‑aaaa‑aaaaaaa                                                                                                                            <  1:3536060/128‑1 (MQ=255)

               aGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGTTTTTTTTATTT‑TC‑TA‑‑T‑T‑‑‑G‑‑‑aaaa‑aaaaaaaaaaa                                                                                                                        >  1:1986555/1‑128 (MQ=255)

                  ttCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGAGTTTGGTTTTTTTATTT‑AA‑TA‑‑T‑T‑‑‑A‑‑‑aaaa‑aaaaaaaaaaa‑‑aaa                                                                                                                   >  2:1712318/1‑128 (MQ=255)

                     aacaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑G‑‑‑aaaa‑aaaaaaaaaaaataaaa                                                                                                                  >  2:3076364/1‑122 (MQ=255)

                      aaaaaaaTAGTAATAAATGCGTAACCAAGTAAAATGCTAAGGTAAGTTGATTAATAAAAAAAGATAAAACCAAAAAAATTGGGTTTGGTTTTTTTATTT‑AA‑AA‑‑T‑T‑‑‑GA‑‑AAAA‑AAAAAAAAAAa‑‑taata‑‑t                                                                                                              <  1:1227611/126‑1 (MQ=255)

                         aaaaTATTAAGAAATGCTTAACCAATTAAAATGCTAAGTTAATTTTATTAAAAATAAAATATTAAACCAAATAAATTTTTTTTGGTTTTTTTATTT‑AA‑TA‑‑T‑T‑‑‑T‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAAtt                                                                                                          <  1:3768391/128‑1 (MQ=255)

                          aaaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAAACAAATACATAGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑TAT‑‑‑A‑‑‑AAAA‑AAAAAAAAAAa‑‑taataataat                                                                                                            >  2:3566256/1‑123 (MQ=255)

                           aaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑G‑‑‑‑AAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGc                                                                                                       >  1:3847709/1‑128 (MQ=255)

                             tattaataaATGCTGAACCATTTACATTGATAAGTTAATTTTTTTAATAATAAAATATTAAAACAAATACATTGTTTTTGGTTTTTTTTTTT‑AA‑TA‑‑T‑TTA‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTg                                                                                                        <  1:1308517/125‑1 (MQ=255)

                               gTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑TTA‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAAttttaa                                                                                                      >  1:2669001/1‑125 (MQ=255)

                                  ataaaTGAGGAACCAATTACAATGCTAATTGAAGTTTTTTAATAATAAAATATTAAACCAAAAACATTGTGTTTGGTTTTTTTATTT‑AA‑TAT‑T‑T‑‑‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACt                                                                                                  <  2:3284869/126‑1 (MQ=255)

                                     aaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GAA‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑AAATTTGAATACaat                                                                                                >  2:3411172/1‑128 (MQ=255)

                                     aaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAACATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑G‑‑‑AAAA‑AAAAAAAAAAT‑‑AAATA‑‑TAttttatataaaataa                                                                                              >  2:2798850/1‑117 (MQ=255)

                                      attcTGAACCAATTAAAATTCTAATTGAATTTTATTAATAATAAAAGATAAAACAAAATACATTGTGTTTGGTTTTTTTATTT‑AA‑TAT‑T‑T‑‑‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATaa                                                                                              <  1:582101/125‑1 (MQ=255)

                                       tGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AA‑TA‑‑A‑T‑‑‑GA‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTTCATAATATaaa                                                                                             >  1:935935/1‑128 (MQ=255)

                                        tcttaaCAAATTAAAATGATAATTTAATTTTATTAAAAAAAAAAAATTAAACAAAAAAAATTTTTTTTGTTTTTTTTATTT‑AA‑AA‑‑T‑TTA‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATaaa                                                                                             <  1:3435267/124‑1 (MQ=255)

                                        gCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TAT‑T‑T‑‑‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTAAAtaaaataaaa                                                                                            >  1:1378628/1‑128 (MQ=255)

                                             aCCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TAT‑T‑T‑‑‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑AAATA‑‑TAATTTAAATAATATaaaaaaatt                                                                                       >  1:2911552/1‑125 (MQ=255)

                                               cAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GA‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTTCAAAATATAAAAAATtttt                                                                                     >  2:3334959/1‑128 (MQ=255)

                                                aaGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑G‑‑‑AAAA‑AAAAAAAAAAAATTAATA‑‑TAATTTTAATATAATAAAAAtttttt                                                                                     >  1:3941479/1‑128 (MQ=255)

                                                aaGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑G‑‑‑AAAA‑AAAAAAAAAAA‑‑AAAAA‑‑TAATTTTAATAAAAAAAAAAAAtttttt                                                                                   >  1:84744/1‑128 (MQ=255)

                                                  ttaaaattatatgTGAATTTTATTTATATTAAAATTTTAAACAAAATTATTTGTTTTTTGTTTTTTTTTTT‑AA‑TAT‑T‑T‑‑‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGttttt                                                                                  <  2:1372054/116‑1 (MQ=255)

                                                  gTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GAA‑AAAA‑AAAAAAAAAAA‑‑AAATA‑‑TAATTTTCATAAAAAAAAAAATtttttt                                                                                   >  1:3997308/1‑128 (MQ=255)

                                                  gTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GA‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCAAAATATAAAAAATTAttttt                                                                                  >  2:1010006/1‑128 (MQ=255)

                                                  gTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑G‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGttttaa                                                                                 >  2:3478707/1‑126 (MQ=255)

                                                  gTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑G‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTACATACTATAAAAAAtttttttta                                                                                 >  1:2105337/1‑127 (MQ=255)

                                                    aaaaTGCTAATTTAATTTTATTAATAATAAAACTTAAAAAAAAATAAATTTTTTTTTGTTTTTTTTTTT‑ACTTA‑‑T‑TA‑‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTc                                                                                 <  1:442015/126‑1 (MQ=255)

                                                        tGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GA‑‑AAAA‑AAAAAAAAAAA‑‑TAAAA‑‑TAATTTTAATAATAAAAAAAATTTTTTTACAAATa                                                                            >  2:3535486/1‑128 (MQ=255)

                                                        tGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GA‑‑AAAA‑AAAAAAAAAAA‑‑AAAAA‑‑TAATTTTCAAAAAAAAAAAAATTTTTATTaaaaaa                                                                            >  1:2594114/1‑126 (MQ=255)

                                                        tGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑G‑‑‑AAAA‑AAAAAAAAAAA‑‑AAATATTTATTTTGCATAAAATAAAAAATTGTTTTTAAAAt                                                                             >  1:1706850/1‑128 (MQ=255)

                                                          cTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GA‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTT‑AATAAAAAAAAAAATTTTTTTTAaaaaaaat                                                                         >  2:1187785/1‑126 (MQ=255)

                                                          cTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GA‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑AAATTTGCATAATATAAAAAATTGTTTTTAAAATaat                                                                          >  2:3781399/1‑127 (MQ=255)

                                                           tAAGTGAATTTTATTAATAATAAAATATTAAACAATATACATTTTTTTTGGTTTTTTTATTT‑AA‑TAT‑T‑T‑‑‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGt                                                                         <  2:1793440/128‑1 (MQ=255)

                                                              gTGAAGTTTTAGAAAAATAAAATATAAATCAAAATAAATTGTTTTTTTTTTTTTTATTT‑AA‑TA‑‑T‑T‑‑‑G‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑Tc                                                                    <  1:338384/128‑1 (MQ=255)

                                                                ttattttattaataatAAAATTAAAAAAAAAAAAAATTGTTTTTTTTTTTTTTATTA‑AT‑AAT‑T‑T‑‑‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCa                                                                   <  1:790846/118‑1 (MQ=255)

                                                                 aaGTTTATTAATAAAAAAAGATTAAACCAAATAAATTGTGTTTGGTTTTTTTATTT‑AA‑TA‑‑T‑TTA‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCa                                                                   <  1:3227054/128‑1 (MQ=255)

                                                                    ttGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GA‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTTAATAAAATAAAAAATTTTTTTTAAAAAAattat‑taataaa                                                               >  2:1893770/1‑122 (MQ=255)

                                                                       tttaataatAAAATATTAAACAAAATACATTTTTTTTTGTTTTTTTTTTT‑AA‑TAT‑T‑T‑‑‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTaa                                                            <  1:2177968/125‑1 (MQ=255)

                                                                       atgaATAATAAAATATTAAACCAAATAAATTTTGTTTTGTTTTTTTATTT‑AA‑TA‑‑T‑T‑‑‑GA‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTaa                                                            <  1:1454884/128‑1 (MQ=255)

                                                                       atgaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GA‑‑AAAA‑AAAAAAAAAAA‑‑AAATA‑‑TAATTTTAAAAATATAAAAAATTTTTTTTAAAAAAattat‑taataataaa                                                            >  2:2721762/1‑119 (MQ=255)

                                                                        tgaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GA‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TATTTTGAATAATATAAAAAATTGTTTTTAAAATAATTAT‑TAAGTATTaaa                                                           >  1:3325359/1‑128 (MQ=255)

                                                                        tgaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GA‑‑AAAA‑AAAAAAAAAAA‑‑TAAAA‑‑AAATTTTCAAAATATAAAAAATTTTTTTACAAATAATTAT‑ACAgcataaaa                                                           >  2:2134884/1‑121 (MQ=255)

                                                                        attttaataaAATATTAAAACAAATAAATTGTTTTTGGTTTTTTTTTTT‑AA‑TA‑‑T‑TTAAA‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTa                                                             <  1:2356443/124‑1 (MQ=255)

                                                                           ataataAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GA‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTAAATAAAATAAAAAATTTTTTTTAAAATAATTAT‑TAATAATTAAAttt                                                        >  2:371099/1‑128 (MQ=255)

                                                                                 aaattttAAAACAAATAAATTTGTTTTGGTTTTTTTATTT‑AA‑TAT‑T‑T‑‑‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTaaaaaa                                                  <  2:1984778/123‑1 (MQ=255)

                                                                                  aaGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GAAAAAAA‑AAAAAAAAAAA‑‑AAAAA‑‑TAATTTGAATAATAAAAAAAATTTTTTTAAAAAAAATTAT‑AAATTATTAAATTTaaaaa                                                   >  2:2022900/1‑128 (MQ=255)

                                                                                     aTTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑G‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTTGATTATTTTAAAAATTTTTTTTAAAAAAATATT‑TAATGATTTATTTTaaaaaaaaaat                                             >  1:1566055/1‑123 (MQ=255)

                                                                                       tAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GAA‑AAAA‑AAAAAAAAAAA‑‑TAAAA‑‑TAATTTGAATACTATAAAAAATTGTTTTACAAAAAATTAT‑AAAGTATTAATTTAAAAAAACaaat                                             >  2:661628/1‑127 (MQ=255)

                                                                                       tAAAACAAATAAATTTTTTTTTGTTTTTTTATTT‑AA‑TAT‑T‑T‑‑‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAaga                                            <  1:1915917/128‑1 (MQ=255)

                                                                                        aaaCCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GAA‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGAAAAAAAAAAAAAATTTTTTTTAAAAAAAATTT‑TAAATATTAAAATAAAAAAACaaaaa                                            >  2:866514/1‑126 (MQ=255)

                                                                                         aaCCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑G‑‑‑AAAA‑AAAAAAAAAAA‑‑AAATA‑‑TAATTTTAATAATAATAAAAATTTTTTTTAAAAAAATTAT‑TCAGTTTTAAATTAAAAAAACCAACAGtt                                         >  2:2648942/1‑128 (MQ=255)

                                                                                          acaaataaaaTTGTTTTTGGTTTTTTTATTT‑AA‑TAT‑T‑T‑‑‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGAGtt                                         <  1:3482584/119‑1 (MQ=255)

                                                                                          aCCAAATAAATTTTGTTTGGTTTTTTTATTT‑AA‑TAT‑T‑T‑‑‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGAGtt                                         <  1:18157/128‑1 (MQ=255)

                                                                                           aaaaaTACATTGTTTTTGGTTTTTTTATTT‑AA‑TA‑‑T‑T‑‑‑T‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGATTtat                                       <  1:2825328/126‑1 (MQ=255)

                                                                                            aaaaTATATTTTGTTTTGTTTTTTTTTTTAAT‑TT‑‑T‑T‑‑‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGAGTtat                                       <  2:419009/127‑1 (MQ=255)

                                                                                             aaataaatTGTTTTTGGTTTTTTTTTTT‑AA‑TAT‑T‑T‑‑‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGAGTtata                                      <  2:398395/128‑1 (MQ=255)

                                                                                             aaaTACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GAA‑AAAA‑AAAAAAAAAAA‑‑AAAAA‑‑TAATTTAAAAAAAAAAAAAAATTTTTTTTAAAAAAATTAT‑AAATAATTAAATTAaaaaaaaaaaaaataat                                       >  2:2445090/1‑117 (MQ=255)

                                                                                             aaaTACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GA‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTACAAATAAGTAT‑ACAGGAGTAAATTTAAAAACCCAAGATTtata                                      >  1:3065408/1‑128 (MQ=255)

                                                                                              aataatttttttttGTTTTTTTTATTT‑AA‑TA‑‑T‑TTA‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGAGTtata                                      <  1:2221954/117‑1 (MQ=255)

                                                                                              aaTACATTGTGTTTGGTATTTTTATTA‑AC‑TA‑‑T‑T‑‑‑GAA‑AAAA‑AAAAAAAAAAA‑‑AAAAA‑‑TAATTAAAAAAAAAAAAAAAATTTTTTTTAAAATAAAAAT‑AAATAAATAAATTAaaaaaaaaaataaaaaaa                                      >  2:612751/1‑116 (MQ=255)

                                                                                               acaCAATGTATTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GA‑‑AAAA‑AAAAAAAAAAA‑‑AAATA‑‑TAATTTGAATAGTTTAAAAAATTTTTTTTAAAATAATTTT‑TAAGGATTAAATTTAAAAAACAAAGAGTtatata                                    >  1:3723507/3‑126 (MQ=255)

                                                                                               aTACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GA‑‑AAAA‑AAAAAAAAAAA‑‑AAATA‑‑AAATTTGCATAAAATAAAAAATTTTTTTAAAAATAA‑TATATAAGAAGAAAATTTAAAAAA‑CAAAAATTATaaaa                                   >  2:2999146/1‑127 (MQ=255)

                                                                                                taatttGTTTTTGGTTTTTTTTTTT‑AA‑TAT‑T‑T‑‑‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGAGTTATAAAt                                   <  2:1614932/124‑1 (MQ=255)

                                                                                                taatttGTTTTTGGTTTTTTTATTA‑AA‑AA‑‑T‑T‑‑‑GAA‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGATTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGATTTATaac                                    <  1:3580407/124‑2 (MQ=255)

                                                                                                taaaTTTTGTTTGGTTTTTTTATTT‑AA‑AAT‑T‑T‑‑‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGAGTTATAAAt                                   <  1:255006/125‑1 (MQ=255)

                                                                                                tACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GA‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGAATAATATAAAAAATTTTTTTAAAAATAATTAT‑TAATAATTAAATTTAAAAAACAAAAATTTAAAAAt                                   >  2:2895004/1‑128 (MQ=255)

                                                                                                tACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GA‑‑AAAA‑AAAAAAAAAAA‑‑TAAAT‑‑TAATTTTCATACATTAAAAAATTGTTTTGAAAAAAATTAT‑TCATGTTTAAATTTAAAAAACAATAAGTTATaaaa                                   >  2:235544/1‑127 (MQ=255)

                                                                                                caCAATGTATTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GA‑‑AAAA‑AAAAAAAAAAA‑‑AAAAA‑‑TATTTTTCAAACGATAAAAAATTTTTTTTAAAATAAATAT‑AAAAGTTTTAATTTAAAAAACaaataatttaaaaa                                   >  2:2082549/2‑117 (MQ=255)

                                                                                                 aatttGTTTTTTTTTTTTTTATTT‑AA‑TATTT‑T‑‑‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGATTTATaact                                   <  2:1440337/125‑3 (MQ=255)

                                                                                                  caatgtaTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GA‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATAATTTAAAAAATTGTTTTTAAATTAATTAT‑TAATTATTAAATTTAAAAAAAAAATATTTATaatatt                                 >  1:624797/4‑124 (MQ=255)

                                                                                                  cATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑G‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGAATAAAAAAAAAAATTGTTTTTCAAATAATTAT‑TAAGGATTAAATTTAAAAAACAAATAGTTATAAATCtt                                >  2:3911564/1‑128 (MQ=255)

                                                                                                  aaTTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑G‑‑‑‑‑‑A‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGt                             <  2:1090098/127‑1 (MQ=255)

                                                                                                   aTTTTGTTTTGTTTTTTTATTT‑AA‑AA‑‑T‑TTAAA‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGATTTATAACTc                                  <  1:505510/128‑1 (MQ=255)

                                                                                                   aTTTTGTTTGGTTTTTTTATTT‑ACTTT‑‑T‑T‑‑‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCtt                                <  2:3640480/128‑1 (MQ=255)

                                                                                                   aTTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GA‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TATTTTTAATAATATATAAAATTGTTTATAAAAAAATTAA‑TCAGTATTAAATTAAAAAAACAAAAATTTATAAATCtt                                >  1:707490/1‑128 (MQ=255)

                                                                                                   aTTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GA‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAATTAT‑TCATGAGTAAATTTAAAAAACCAAGAGTAATAAATCtt                                >  1:1638814/1‑128 (MQ=255)

                                                                                                    ttGTTTTTGGTTTTTTTATTT‑AA‑TAT‑T‑T‑‑‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATGAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTg                               <  1:2458229/128‑1 (MQ=255)

                                                                                                     tgtaTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GA‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATAATATAAAAAATTGTTTTTAAAATAAGTAT‑TAAGGATTAAATTTAAAAAACAAAAAGTTAaaaaaatttg                              >  2:3840388/1‑122 (MQ=255)

                                                                                                      gtgtTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GAA‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTAAAATAAGTAT‑TAAGGAGTAAATATAAAAAACAAATAGTTATATATATTgt                              >  1:2756424/1‑127 (MQ=255)

                                                                                                       tgtTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑G‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATAATATAAAAAATTGTTTTTAAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGttt                           >  1:3662439/1‑128 (MQ=255)

                                                                                                            ttttttttttttT‑AT‑TT‑‑T‑T‑‑‑A‑‑‑AAAATAAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTg                       <  2:775512/126‑1 (MQ=255)

                                                                                                            tggatttttATTT‑AC‑TAT‑T‑T‑‑‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTg                       <  1:2284094/124‑1 (MQ=255)

                                                                                                            ggTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑GA‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TATTTTGCAAAATATAAAAAATTGTTTTAAAAATAAGTAT‑TAAGAATTAAATTTAAAAAAACATTAGTATAAAATCttttttttttt                       >  1:2012025/1‑127 (MQ=255)

                                                                                                             ttttttattttt‑aT‑TA‑‑T‑T‑‑‑T‑‑‑AAAA‑TAATAAAATAA‑‑TAATA‑‑TTCTTTTCATACTATAAAAAATTGATTTTCAAATAATTAT‑GCAGGAGTAAATTTAAAAAACCAAGAGTTATAATTCTTGGTTTTTTGtt                     <  1:1769184/127‑1 (MQ=255)

                                                                                                             gTTTTTTTATTT‑AA‑TAT‑T‑T‑‑‑A‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGt                      <  1:3896714/128‑1 (MQ=255)

                                                                                                              tttttttATTT‑AA‑TA‑‑T‑T‑‑‑T‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAATTAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGttt                    <  1:3013826/128‑1 (MQ=255)

                                                                                                               ttttttATTT‑AA‑T‑‑‑T‑T‑‑‑T‑‑‑TAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTtat                  <  2:317977/128‑1 (MQ=255)

                                                                                                                  tttattt‑aA‑TT‑‑T‑T‑‑‑TA‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTtata                 <  2:2215136/128‑1 (MQ=255)

                                                                                                                    tattt‑aC‑TA‑‑T‑T‑‑‑G‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑AAATTTGCATAATATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAACATTTATAAAACTTGTTTTTTTGTTTAtatta              >  2:2591317/1‑128 (MQ=255)

                                                                                                                                    tattgaaaaaa‑aaaaaaaaaaa‑‑TAATA‑‑TAATTTGAATAATAAAAAAAATTTTTTTTAAAATAAGTAT‑TAAGGATTAAATTTAAAAAACCAAGATTTTTAAATATTGGTTTTTTTTTTTTtttattttt         >  1:3279188/8‑128 (MQ=255)

                                                                                                                                      atttaaaaa‑aaaaaaaaata‑‑TAATA‑‑TAATTTGCATACTATATATAATTTTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATATTGGTTTTTTGTTTATATTATTATTTg       <  2:488506/123‑1 (MQ=255)

                                                                                                                                       tgaaaaaa‑aaaaaaaaaaa‑‑TAATT‑‑TAATTTGATTAATTTAAAAAATTTTTTTTAAAATAAGTAT‑TAAGTATTAAATTTAAAAAACAAAGAGTTAAAAATATTTGTTTTTTTTTTATTTTATTTTTTga      >  1:2953622/5‑127 (MQ=255)

                                                                                                                                        taaaaaa‑aaaaaaaaaaa‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTc     <  2:917372/125‑1 (MQ=255)

                                                                                                                                         ttaaaa‑aaaaaaaaaaa‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCt    <  2:1265837/126‑1 (MQ=255)

                                                                                                                                          aaaaa‑aaaaaaaaaaa‑‑aaaTA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCtt   <  1:1162003/127‑1 (MQ=255)

                                                                                                                                          aaaaa‑aaaaaaaaaaa‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCtt   <  2:2512361/127‑1 (MQ=255)

                                                                                                                                           aaaa‑aatataaaaaa‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCttt  <  1:1091144/128‑1 (MQ=255)

CTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑AC‑TA‑‑T‑T‑‑‑G‑‑‑AAAA‑AAAAAAAAAAA‑‑TAATA‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAT‑TCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCTTT  >  CP016816/34818‑35073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.