New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi 2945986 =84 (1.050)6 (0.080) 6/266 9.7 6.2% noncoding (91/97 nt) RIP206 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP206 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913_3_pae_pgi = 4080042 101 (1.330)noncoding (23/98 nt) REP297 (repetitive extragenic palindromic) element; contains 2 REP sequences REP297 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 106 total aligned reads displayed.

TGTTCCTGGCATCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGTGGTGGTGGGTAAATTGAGGCCAAAC  >  NC_000913_3_pae_pgi/4079897‑4080188
                                                                                                                                                   |                                                                                                                                                  
tgtTCCTGGCATCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACAAGCGCGATGTTCATGCCGGATGCGGCGTGAACACCTTATc                                                                                                                                                 >  1:969844/1‑149 (MQ=255)
 gtTCCTGGCATCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTAAcc                                                                                                                                                <  2:176849/149‑1 (MQ=255)
    ccTGGCATCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGc                                                                                                                                             >  1:928572/1‑149 (MQ=255)
     cTGGCATCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGca                                                                                                                                            <  2:1048079/149‑2 (MQ=38)
     cTGGCATCTGGCAAGGGTGTGAGGAAGATGGTGCCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGca                                                                                                                                            >  1:1048079/1‑148 (MQ=38)
          aTCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACaa                                                                                                                                       >  1:920876/1‑149 (MQ=255)
           tCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACaaa                                                                                                                                      >  2:716315/1‑149 (MQ=255)
              ggCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTc                                                                                                                                   <  1:1230457/149‑1 (MQ=255)
              ggCAAGGGCGTGAAGAAGATGGTGGCGAATAACAACGTAAGATGCGCAAGGAATGGTAAAAGA‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTc                                                                                                                                   <  2:1346956/149‑1 (MQ=21)
                 aaGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGA‑AAAACATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGtc                                                                                                                                >  1:905413/1‑148 (MQ=255)
                  aGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGtat                                                                                                                               <  1:892903/149‑1 (MQ=255)
                       gggAGGAAGAGGGGGTCGAATATCAGCGTAAGGTGCGCGAGGAAGGGTAATGGG‑AAAAAATGATGGCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTGGTATAAAtt                                                                                                                          <  2:262258/147‑1 (MQ=25)
                        tgAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTc                                                                                                                         >  1:86532/1‑149 (MQ=255)
                          aGGAAGTTGGTGTCGAATATCAGTGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCaa                                                                                                                       <  1:548509/149‑1 (MQ=255)
                          aGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCaa                                                                                                                       >  1:642902/1‑149 (MQ=255)
                            gAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATg                                                                                                                     >  2:216732/1‑149 (MQ=255)
                            gAAGATGGTGTCGAATATCAGCGTAAGCAGCGCGAGGAATGGTAATGGG‑AAAAAATGAAGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGAAGCGGCGCGAACCACCTCACCGGCCAACAAAGTCGTATAAATTCAATg                                                                                                                     >  2:621469/1‑149 (MQ=37)
                                aTGGTGTACGATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTAtt                                                                                                                 <  1:1235711/149‑1 (MQ=255)
                                   gtgtGGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCCAT‑AGTTACTCTTACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCa                                                                                                              <  1:329333/149‑1 (MQ=25)
                                   gtctCGATTATTAGCGTCAGCTGCGGGGTTATTTGTAAGGGG‑AATATATGATGTCAATGAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCa                                                                                                              <  2:633630/146‑1 (MQ=18)
                                    tgtCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAg                                                                                                             <  1:78881/149‑1 (MQ=255)
                                      tCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGtt                                                                                                           >  1:1141408/1‑149 (MQ=255)
                                        gAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTa                                                                                                         >  2:1192492/1‑149 (MQ=255)
                                          atatCAGCGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTAtt                                                                                                       <  1:492185/149‑1 (MQ=255)
                                          atatCAGCGTAAGCGGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTAtt                                                                                                       <  1:1262027/149‑1 (MQ=255)
                                            atCAGCATAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATTAATTCAATGTATTGCAGTTTATTgg                                                                                                     <  1:1273653/149‑1 (MQ=255)
                                               aGCGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCa                                                                                                              >  2:408776/1‑137 (MQ=255)
                                               aGCGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCa                                                                                                              <  1:408776/137‑1 (MQ=255)
                                               aGCGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAg                                                                                                  <  1:995959/149‑1 (MQ=255)
                                               aGCGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAg                                                                                                  <  1:131881/149‑1 (MQ=255)
                                                 cttAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGc                                                                                                <  1:701857/147‑1 (MQ=255)
                                                 cGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGc                                                                                                <  2:764683/149‑1 (MQ=255)
                                                 cGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGc                                                                                                <  1:1192492/149‑1 (MQ=255)
                                                  gTAAGCTGCTCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGcc                                                                                               <  2:873229/149‑1 (MQ=255)
                                                     agccgaccgAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TCCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGa                                                                                            <  1:407466/142‑1 (MQ=255)
                                                     aGCTGGGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGa                                                                                            <  2:852732/149‑1 (MQ=255)
                                                     aGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGa                                                                                            <  2:1110443/149‑1 (MQ=255)
                                                         gcgcGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAag                                                                                        <  2:443702/149‑1 (MQ=255)
                                                               ggAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAagcgcagc                                                                                  >  1:655927/1‑149 (MQ=255)
                                                               ggAATGGTAATGGG‑AAAAAATGATGGCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGGCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAagtgcagc                                                                                  <  2:263841/149‑1 (MQ=255)
                                                                      tAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTAt                                                                                                        <  2:1343459/120‑1 (MQ=255)
                                                                      tAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTAt                                                                                                        >  1:1343459/1‑120 (MQ=255)
                                                                      tAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAg                                                                           <  2:1141408/149‑1 (MQ=255)
                                                                      tAATGGG‑AAAAAATGAAGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAg                                                                           >  1:1226221/1‑149 (MQ=255)
                                                                       aaTGGGAAAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAg                                                                           >  1:159203/1‑149 (MQ=255)
                                                                            g‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCaaac                                                                     >  1:562904/1‑147 (MQ=255)
                                                                            g‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATc                                                                     <  2:205990/149‑1 (MQ=255)
                                                                            g‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATc                                                                     >  2:33750/1‑149 (MQ=255)
                                                                            g‑AAAAAATGATGTCAAGCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATc                                                                     <  2:1050322/149‑1 (MQ=255)
                                                                                       tgTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGt                                                           <  2:1257152/149‑1 (MQ=255)
                                                                                         gcAATCAGAT‑TGCGGACAACGGGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGtca                                                         <  2:1096360/148‑1 (MQ=255)
                                                                                           aaTCAGAT‑TGCTGCCCAAGTGCGAGTTATTCATGCCGGATGCGGCGTGAACGCCTTCTCCTGCCTCGGAAGTGTTATACATTCAGTGTGTTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATAAGGCAATCTTACGCGTGtcatc                                                       >  2:837593/1‑149 (MQ=21)
                                                                                           aaTCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAACGCATCAGGCAATCTTACGCTTGtcatc                                                       >  1:1141857/1‑149 (MQ=255)
                                                                                                gAT‑GGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGtct                                                  <  2:642902/149‑1 (MQ=255)
                                                                                                 aT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGtctc                                                 >  1:420975/1‑149 (MQ=255)
                                                                                                       tGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGcc                                            >  2:1315483/1‑149 (MQ=255)
                                                                                                       tGACAAAGTGGCCGTGGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCGACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGcc                                            <  1:183128/149‑1 (MQ=25)
                                                                                                         aCAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCa                                          >  1:32701/1‑149 (MQ=255)
                                                                                                         aCAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCCCATGCCCa                                          >  1:26858/1‑149 (MQ=255)
                                                                                                             ccggcgcGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAAc                                      <  2:1320265/146‑1 (MQ=255)
                                                                                                              gTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGtc                                                   <  1:1147954/135‑1 (MQ=255)
                                                                                                              gTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGtc                                                   >  2:1147954/1‑135 (MQ=255)
                                                                                                              gTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAAcc                                     >  2:815228/1‑149 (MQ=255)
                                                                                                               tGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCt                                    >  2:808295/1‑149 (MQ=255)
                                                                                                               tGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCt                                    >  2:808372/1‑149 (MQ=255)
                                                                                                                 cgcgTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTa                                  <  1:1021891/149‑1 (MQ=255)
                                                                                                                  gcgTTGTTCAGACCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTAt                                 <  2:149107/149‑1 (MQ=255)
                                                                                                                  gcgTTGGTGATGCCGGAGGCGGTGTGAACGTCTTTTCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGTCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTAt                                 <  2:617839/149‑1 (MQ=38)
                                                                                                                   cgTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAagcgcagc                                                                                  <  2:403520/99‑1 (MQ=255)
                                                                                                                   cgTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAagcgcagc                                                                                  >  1:403520/1‑99 (MQ=255)
                                                                                                                   cgTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTAtt                                <  1:592365/149‑1 (MQ=255)
                                                                                                                   cgTTGTGCATGGCTGATGCGGCGTGAGCGCCTTATCCGGGCTACAAAGGTGTAGAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCAAAGCGCATCAGGCAAGGTTACGCTTTTCATCAGTCTCATGCCCATAACCTTAtt                                <  2:545420/149‑1 (MQ=255)
                                                                                                                   ccttgttCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTAtt                                <  1:535741/147‑1 (MQ=255)
                                                                                                                    gttgttCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTg                               >  1:1355755/1‑149 (MQ=255)
                                                                                                                    gttgttCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTg                               >  1:173336/1‑149 (MQ=255)
                                                                                                                           aTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAagcgcagc                                                                                  <  1:440141/91‑1 (MQ=255)
                                                                                                                           aTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGtct                                                  <  2:1194116/123‑1 (MQ=255)
                                                                                                                           aTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGtct                                                  >  1:1194116/1‑123 (MQ=255)
                                                                                                                           aTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATgtggt                        >  2:528409/1‑149 (MQ=255)
                                                                                                                           aTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGCATTGCAGTTTATTGGTAGGCCTGATAagcgcagc                                                                                  >  2:440141/1‑91 (MQ=255)
                                                                                                                            tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATgtggtg                       <  2:1118841/149‑1 (MQ=255)
                                                                                                                            tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATgtggtg                       <  1:216732/149‑1 (MQ=255)
                                                                                                                              ccGGAAGCGGCGTGAACGCTTCAGCCTGCTTACAAAGTCGTATAAATTCAATGTATTGCAGTGTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATTAGTCTCATGCCCATAACCTTATTGATgtggtggt                     <  2:635069/149‑1 (MQ=38)
                                                                                                                                tggtgaggcgTGAACGCCTTAGCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCTCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGtggtggtgg                   <  2:148914/143‑1 (MQ=255)
                                                                                                                                ggATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGtggtggtgg                   <  2:1165155/149‑1 (MQ=255)
                                                                                                                                ggATGCGGCGTGAACGCCTTATCCGGCATACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGtggtggtgg                   <  2:470398/149‑1 (MQ=255)
                                                                                                                                 gATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGTGGTGGTggg                  <  2:577452/149‑1 (MQ=255)
                                                                                                                                 gATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGTGGTGGTggg                  <  2:64012/149‑1 (MQ=255)
                                                                                                                                      ggcgTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGTGTTGGTGGGTAAAt             >  1:831272/1‑149 (MQ=255)
                                                                                                                                          tgatagCCTGATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGTGGTGGTGGGTAAATTGAg         <  2:1339130/144‑1 (MQ=255)
                                                                                                                                          tGACCGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCGATCTTACGCTTGTCGTCAGTCTCATGCCCATAACCTTATTGATGTGGTGGTGGGTAAATTGAg         <  1:1238681/149‑1 (MQ=255)
                                                                                                                                          tGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGTGGTGGTGGGTAAATTGAg         <  1:738240/149‑1 (MQ=255)
                                                                                                                                           gAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGTGGTGGTGGGTAAATTGAgg        >  1:724920/1‑149 (MQ=255)
                                                                                                                                            aaCGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGTGGTGGTGGGTAAATTGAg         >  1:261446/1‑147 (MQ=255)
                                                                                                                                            aaCGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGTGGTGGTGGGTAAATTGAg         <  2:261446/147‑1 (MQ=255)
                                                                                                                                             aCGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGTGGTGGTGGGTAAATTGAGGcc      >  2:361798/1‑149 (MQ=255)
                                                                                                                                              cGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATGGGTGAGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGTGGTGGTGGGTAAATTGAGGCCa     >  1:982119/1‑149 (MQ=255)
                                                                                                                                                ccTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGTGGTGGTGGGTAAATTGAGGCCaaa   <  1:1333026/149‑1 (MQ=255)
                                                                                                                                                 cTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGTGGTGGTGGGTAAATTGAGGCCAAAc  <  2:419912/149‑1 (MQ=255)
                                                                                                                                                 cTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGTGGTGGTGGGTAAATTGAGGCCAAAc  >  2:1264180/1‑149 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
TGTTCCTGGCATCTGGCAAGGGTGTGAGGAAGATGGTGTCGAATATCAGCGTAAGCTGCGCGAGGAATGGTAATGGG‑AAAAAATGATGTCAATCAGAT‑TGCTGACAACGTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCAGTTTATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCAATCTTACGCTTGTCATCAGTCTCATGCCCATAACCTTATTGATGTGGTGGTGGGTAAATTGAGGCCAAAC  >  NC_000913_3_pae_pgi/4079897‑4080188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.