New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	1343551 =	48 (0.990)	4 (0.090)	4/266	6.6	8.2%	intergenic (‑223/+46)	osmB/yciT	osmotically and stress inducible lipoprotein/global regulator of transcription; DeoR family
	?	NC_000913_3_pae_tpiA	1343581 =	46 (1.030)					intergenic (‑253/+16)	osmB/yciT	osmotically and stress inducible lipoprotein/global regulator of transcription; DeoR family
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGT‑CTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGCTCAACGGGACCGATGGAGTATGAATGTAC  >  NC_000913_3_pae_tpiA/1343434‑1343722                                                                                                                                                     |                                                                                                                                              ggTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGT‑CTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTa                                                                                                                                              >  1:537857/1‑149 (MQ=255)  gTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAAAAATTTTATATAATGACAGTGGTAATAACAGGTAAACATTGCATCA‑CATCACCGAGAAAGCACCTGAGAGCGGATGATTTGCCAAACTGCAAATCACCCGTag                                                                                                                                             >  2:605245/1‑149 (MQ=255)   ttATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGT‑CTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTaga                                                                                                                                            >  1:789910/1‑149 (MQ=255)     atatCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGT‑CTTAATTATCAACCCGGACTCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTagaca                                                                                                                                          >  2:89460/1‑147 (MQ=255)      taacccGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGT‑CTTAATTGTCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGaa                                                                                                                                         <  1:249024/144‑1 (MQ=255)       atCACGCCGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTCTATCTGGAGAGTGTTAATAACAGGTAAATAGT‑CTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAg                                                                                                                                        <  1:586163/149‑1 (MQ=255)        tCACGCAGTGGATAATTACTTCCTGTTATTTCGGTGATAATAATTTTATATCGTGAGAGTGTTAATAACAGGTAAATAGT‑CTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAgg                                                                                                                                       <  1:774942/149‑1 (MQ=255)                      aTGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGT‑CTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCCAATCATCCTAAGGAAAGGGAAATGGTTAAATg                                                                                                                         >  2:617275/1‑149 (MQ=255)                           ttgcTGTTATATCGCTGATAATAATTTTATATCTTAAGAGTGATAATAACAGGTAAATAGT‑CTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAac                                                                                                                    <  1:267350/146‑1 (MQ=255)                                gTTATATCGCTGATACCTATTTGACGACATTAGAGGGTTAATAACAGGTAAATAGT‑CTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTATAGAAGGGAAATGGTTAAATGTCAACGACGt                                                                                                               <  2:599745/149‑1 (MQ=255)                                      tCGGTGATAAGAATTTTACATCTTGAGAGTGTTAATAACTGGTAAATCGT‑CTTAATTATCAACCAGGAATCATCGTAGATCGGATGATTTGCCAAACTGCAAATCTTCCGTAGAGAAGGGAAACGGTTAAATGTCAACGACGTGAATgg                                                                                                         <  1:645467/149‑1 (MQ=255)                                       cGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGT‑CTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGt                                                                                                        >  2:702098/1‑149 (MQ=255)                                        gCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGT‑CTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTGGCCAAAGTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACCTGaccggta                                                                                                       >  2:645467/1‑143 (MQ=255)                                         cggATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGT‑CTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATGCGTAGGGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGa                                                                                                      <  2:141442/147‑1 (MQ=255)                                         cTGATAATAATTTTATATCTTGTGAGTGTTAATAACAGGTAAATAGT‑CTTAATTATCAACCAGGAATCATCTTATAGCGTATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGa                                                                                                      <  1:542490/149‑1 (MQ=255)                                          tgttaaaaaTTTTATATCTCGAGGGTGGTAATAACAGGTAAATAGT‑CTTAATTATCAACCAGGAATCAGCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAg                                                                                                     <  2:308267/146‑1 (MQ=255)                                              aataatTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGT‑CTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTa                                                                                                 <  2:576769/149‑1 (MQ=255)                                                          tCTTGAGAGTGTTAATAACAGGTAAATAGT‑CTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGa                                                                                     <  1:49806/149‑1 (MQ=255)                                                            ttGAGAGTGTTAATAACAGGTAAATAGT‑CTTAATTATCAACCAGGAATCATCTTAGAGCGGAGGATTTGCCAAACTGCAGATCATCCGTAGAGCAGGGCAATGGTTAAATGTCAACGACGTGAATGGTGCGTTTCCTGTGCTCAAGacg                                                                                   >  1:61671/1‑147 (MQ=255)                                                            ttGAGAGTGTTAATAACAGATAAATAGT‑CTTAATTATAAACAAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAATAGTAAACGACGTGAATGGTGGGTTTACTGTGCTCAAGATg                                                                                   >  2:695247/1‑149 (MQ=255)                                                             tGAGAGTGTTAATAACAGGTAAATAGT‑CTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGc                                                                                  >  2:205834/1‑149 (MQ=255)                                                             tGAGAGTGTTAATAACAGGTAAATAGT‑CTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGc                                                                                  >  1:518280/1‑149 (MQ=255)                                                               agagTGTTAATAACAGGTAAATAGT‑CTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCAt                                                                                <  2:537857/149‑1 (MQ=255)                                                                 agTGTTAATAACAGGTAAATAGT‑CTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCa                                                                              >  1:569823/1‑149 (MQ=255)                                                                           aCAGGTAAATAGT‑CTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGATAAGTTTACTGTGCTCAAGATGCATCAGACAGCTGgc                                                                    >  2:365468/1‑149 (MQ=255)                                                                                       t‑CTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGTAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCCAGATGCATCAGATCGCTGGCGCGAATTTTCGa                                                        >  2:351868/1‑149 (MQ=255)                                                                                         cTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGaa                                                       >  2:777580/1‑149 (MQ=255)                                                                                              ttATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGt                                                  <  1:125022/149‑1 (MQ=255)                                                                                                aTCAACTAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTaa                                                <  2:61671/149‑1 (MQ=255)                                                                                                aTCAACCAGGAATCATCTTAGAGCCGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATCGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTaa                                                <  1:215003/149‑1 (MQ=255)                                                                                                   aaCCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGTAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCa                                             >  1:305091/1‑149 (MQ=255)                                                                                                     ccAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCAcg                                           >  2:62091/1‑149 (MQ=255)                                                                                                      cAGGAATCATCTTAGAGGGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCAcgc                                          <  2:298502/149‑1 (MQ=255)                                                                                                       aGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATGGCTGGCGAGTATTTTCAAGTAGGTAAGCAcgct                                         >  2:121208/1‑148 (MQ=255)                                                                                                         gAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCAt                                                                                >  2:676948/1‑108 (MQ=255)                                                                                                         gAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCAt                                                                                <  1:676948/108‑1 (MQ=255)                                                                                                             catcTTAGAGCGGAATATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTTTTTTCGAATCGGTAATCACGCGATTGaa                                   <  1:168237/149‑1 (MQ=255)                                                                                                               tcTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATTGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATc                                 <  2:518280/149‑1 (MQ=255)                                                                                                               tcTTAGAGCGGATGATTTGCCAAACTGCAAAGCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATc                                 <  2:232688/149‑1 (MQ=255)                                                                                                                cTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGATGCGGTAATCACGCGATTGAGTCg                                >  1:366858/1‑149 (MQ=255)                                                                                                                        ggACGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGCTCAACgg                        <  2:194825/149‑1 (MQ=255)                                                                                                                             atTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTAAAAGAAGTGAATGGTGAGTTTGCTGTGATCAAGGTGCATCAGATAGCTCGCGCGTATATTCGAATCAGCAATCACGCGATTGAATCGCTCACCGGGACCg                   >  2:287467/1‑149 (MQ=255)                                                                                                                                tGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGCTCAACGGGACAGATg                >  1:104538/1‑149 (MQ=255)                                                                                                                                  tcAAACCGCTAATCATCCTTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGGTCAACGGGACCGATGGa              <  2:525446/148‑1 (MQ=255)                                                                                                                                  ctaaaCTGCGAATCATCCGTAGAGAGGGGAACGGGTTAAATGGCAACGACGTGAATGGTGAGTTTACTGTGCTCGAGATGCATCAGATCGCTGGCGCGTATTTTCGAAGCGGGAATAACGCGTTTGAATCGCTCAACGGGACCGATGGa              <  2:523415/147‑1 (MQ=255)                                                                                                                                    aaaCTGCAAAGTATTCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTTAATGGTGAGTTTACTGTGCTCAAGTTGCATCGGATTGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGCTCAACGGGACCGATGGAGt            <  2:721110/149‑1 (MQ=255)                                                                                                                                         gcgaaTCATCGGGAGAGAAGGGAAACGGTTAAATGGCAACGACGGGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGCTCAACGGGACCGATGGAGTATGaa       <  1:654413/146‑1 (MQ=255)                                                                                                                                             atcatcCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGCTCAACGGGACCGATGGAGTATGAATGTa   <  1:205834/149‑1 (MQ=255)                                                                                                                                              acattCGTAGAGAAGGGAAATGGTTAAATGTCAACGTCGTGAATGGTGATTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCTATTGAATCGCTCAACGGGACCGATGGAGTATGAATTTAc  <  2:695985/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              GGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGT‑CTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGCTCAACGGGACCGATGGAGTATGAATGTAC  >  NC_000913_3_pae_tpiA/1343434‑1343722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.