New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 4549702	NA (NA)	5 (0.090)	5/270	6.6	NA	noncoding (4/36 nt)	REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913_3_pae_tpiA	= 4549734	NA (NA)					noncoding (36/36 nt)	REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

CACGTACCGGAGGGCAGGTGACTGCAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATT  >  NC_000913_3_pae_tpiA/4549556‑4549849                                                                                                                                                   |                                                                                                                                                     cACGTACCGGAGGGCAGGTGACTGCAGGGAATGTGCAATCGATTATTGGCGTGAATTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGc                                                                                                                                                    <  1:39019/149‑1 (MQ=255)   cGTACCGGAGGGCAGGTGACTGCAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCa                                                                                                                                                  <  2:842991/149‑1 (MQ=255)          gAGGGCAGGTGACTGCAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGa                                                                                                                                           <  1:137585/149‑1 (MQ=255)          gAGGGCAGGTGACTGCAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGACCTTTGTAGGCCAGATAAGa                                                                                                                                           >  1:369572/1‑149 (MQ=255)           aGGGCAGGTGACTGCAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGAc                                                                                                                                          <  1:8035/149‑1 (MQ=255)           aGGGCAGGTGACCGCAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGAc                                                                                                                                          <  1:222162/149‑1 (MQ=255)            gggCAGGTGACTGCAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGAcg                                                                                                                                         >  2:503390/1‑149 (MQ=255)            gggCAGGTGACTGCAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGAcg                                                                                                                                         >  2:503266/1‑149 (MQ=255)               cAGGTGACTGCAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGt                                                                                                                                      <  1:827935/149‑1 (MQ=255)               cAGGTGACTGCAGGGAATGTGCAATCGATTATGGGCGTGACTTTTGGTTATCAATAAAGAAATCACACGACATTGCTAATGCTGGTACGCCATATTACCTGAAGGTAAAAGCCTGCAGGTTAGCCCTTTGTAGGCCAGATAAGACGCGt                                                                                                                                      <  2:38178/149‑1 (MQ=255)                       tGCAGGGAATGTGCAATCGATTATACGCGGCACAGGGATTCATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATCCTACCTGAAGCTAAAAACCGGAATGTTACCCCTTTGTCGGCAGGTTAAAACGCGCCAGcttgg                                                                                                                              >  2:951508/1‑145 (MQ=255)                         ccgggAATGTGCAATCCATTATTGGTGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATCCTGGTACGCAATATAACCTGAAGCTAAAAACCTGCAAGTTAGCCCTTTGTAGACCAGATAATACGCGTCCGCCT‑CGCa                                                                                                                           >  2:177170/3‑149 (MQ=255)                              aaTGTGCAGTCGATTATTGGCGTGACTTTTGTGTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCACGATAGGACGCGTCAGCGT‑CGCATCTgg                                                                                                                      <  2:463899/149‑1 (MQ=39)                              aaTGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTgg                                                                                                                      <  1:757138/149‑1 (MQ=255)                                  tgCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAACTGAGAGGACATTGCTCATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGGGT‑GGCATCTGGCATa                                                                                                                  >  1:727905/1‑149 (MQ=38)                                  tgCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATa                                                                                                                  >  1:87093/1‑149 (MQ=255)                                  tgCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATa                                                                                                                  >  1:729343/1‑149 (MQ=255)                                    cAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATaaa                                                                                                                <  1:336497/149‑1 (MQ=255)                                      aTCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCTAGATAAGACGCGTCAGCGT‑CGCATCTGCCATAAACa                                                                                                              >  1:561541/1‑149 (MQ=255)                                      aTCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACa                                                                                                              >  2:96928/1‑149 (MQ=255)                                        cGATTAGTGGCGTGACTTTTGTTTACCAATATAGAAAGCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACaaa                                                                                                            <  2:791334/149‑1 (MQ=255)                                         gATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAg                                                                                                           >  1:775198/1‑149 (MQ=255)                                         gATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAg                                                                                                           >  2:148156/1‑149 (MQ=255)                                                      aCTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGATgg                                                                                              >  2:738901/1‑149 (MQ=255)                                                       cTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGt                                                                                             <  1:503390/149‑1 (MQ=255)                                                       cTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGt                                                                                             <  1:503266/149‑1 (MQ=255)                                                        ttttGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTCCTGGTc                                                                                            >  2:235872/1‑149 (MQ=255)                                                         tgtgtgTATCTATAAAGAAAGGACAGGACATTGCTAATTCTGGTACGCAATATTACCTGGAGCTAAAGACCTGCACGTTAGCCCTTTGTAGGCCAGGTAAGTGGCGTCAGCGT‑CGCATCTGGGAGAAGCAAAGCGCACTTTGCTGGTCt                                                                                           <  2:226187/147‑1 (MQ=255)                                                             tttATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACaaa                                                                                                            <  2:109794/128‑1 (MQ=255)                                                             tttATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACaaa                                                                                                            >  1:109794/1‑128 (MQ=255)                                                             tttATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTc                                                                                       >  1:577507/1‑149 (MQ=255)                                                             tttATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGAACTTTGCTTGTCTCTTc                                                                                       >  2:20225/1‑149 (MQ=255)                                                                 tCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGAATGTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCt                                                                                   >  1:676337/1‑149 (MQ=255)                                                                  cAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACaaa                                                                                                            >  2:125186/1‑123 (MQ=255)                                                                  cAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACaaa                                                                                                            <  1:125186/123‑1 (MQ=255)                                                                         gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTTCCCTCAc                                                                                >  2:445937/1‑144 (MQ=255)                                                                         gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTTCCCTCAc                                                                                <  1:445937/144‑1 (MQ=255)                                                                               acaGGACATTGCTAATGCTGGTACGCAATGTTGCGTGAAGCTAATAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCctct                                                                     <  2:87093/149‑1 (MQ=255)                                                                                 aGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTcc                                                                   >  1:757561/1‑149 (MQ=255)                                                                                  ggACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTccc                                                                  >  2:723741/1‑149 (MQ=255)                                                                                      aTTGGTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGa                                                              <  1:759103/149‑1 (MQ=255)                                                                                       ttGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAg                                                             <  1:552481/149‑1 (MQ=255)                                                                                       ttGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTAACCCTAACCCTCTCCCCGGAg                                                             >  2:76176/1‑149 (MQ=255)                                                                                        tGCTAACGCTGGTAGGTAACATCACGGGCAGCTAAAAACCGGTACGTTCGCCCTTTGTAGGCCACATAAGACGCGTCAGCGC‑CGCACCTGGCATAAACAAAGCGCACTTTGCTGGACTGTTCCCCTCATCCTAACCCTCTCCCTGGAgg                                                            <  2:568161/149‑1 (MQ=255)                                                                                         gCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAggg                                                           >  1:328621/1‑149 (MQ=255)                                                                                            aaTGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCg                                                        >  2:266569/1‑149 (MQ=255)                                                                                               gCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAgg                                                     <  1:656264/149‑1 (MQ=255)                                                                                                cTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCGAACCCTCTCCCCGGAGGGGCGAggg                                                    <  1:892689/149‑1 (MQ=255)                                                                                                 tGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTGACCCTAACCCTCTCCCCGGAGGGGCGAgggg                                                   >  1:14329/1‑149 (MQ=255)                                                                                                       gCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTc                                             >  2:858816/1‑149 (MQ=255)                                                                                                       gCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACACGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGAGCGAGGGGACTGTc                                             >  1:176234/1‑149 (MQ=255)                                                                                                         aaTATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTACCCCCCTCCCCGGAGGGGCGAGGGGACTGTCCg                                           >  2:644974/1‑149 (MQ=255)                                                                                                         aaTATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCg                                           <  1:868829/149‑1 (MQ=255)                                                                                                                  tgacgatAAAAACCTGCACGTTAGCCCTTTATAGGCCAGATTAGTCGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTTCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACAttt                                  <  1:431319/143‑1 (MQ=38)                                                                                                                     aGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTa                               <  1:49601/149‑1 (MQ=255)                                                                                                                       cTAACAACCTGCACGGTAGGCCTTTGTAGGCCAGATAAGACTGGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCCCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGa                             <  2:280439/149‑1 (MQ=38)                                                                                                                       cTAAAAACCTGCACGGTAGCCCTCTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGa                             <  1:593691/149‑1 (MQ=255)                                                                                                                        tAAAAACCTGCACGTTAGCCCTTTGGAGGCCAGATAAGAAACGTCAGCGT‑CACATCTGGCATAAACAAAACGCACTTTGCTGGGCTGTTCCCCCCACCCCACCTCTCCACCCTTATATGCGGAGACACTGTCCGGGCAGATTTTGAgca                            >  2:104944/1‑147 (MQ=16)                                                                                                                            aaCCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTg                        <  1:573783/149‑1 (MQ=255)                                                                                                                            aaCCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTg                        <  1:652010/149‑1 (MQ=255)                                                                                                                               cTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGtca                     <  2:65575/149‑1 (MQ=255)                                                                                                                                tGCACTTTAGCCCTTTGTAGGCCAGATAAGCCGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCTTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGtcat                    <  1:764579/149‑1 (MQ=255)                                                                                                                                tGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGACACATTTTTAGACTTTTtcgt                    >  2:431611/1‑147 (MQ=255)                                                                                                                                 gCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGtcatc                   <  1:739549/149‑1 (MQ=255)                                                                                                                                  ggcgtgcgCCCTTTGGAGGTGAGATCAGACGCGTCACTGG‑CGCATCTGGCATAAACAAAGCTGATTTTGCTGGTCTGTTCGCCTCCCCCTAACCCTCTCCCCGGAGAGGCGAGGGGACTGTCCGGGCACATTTTTAAACTTTGtcatca                  <  2:298770/142‑1 (MQ=255)                                                                                                                                  cACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGtcatca                  <  2:823883/149‑1 (MQ=255)                                                                                                                                  cACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGtcatca                  <  1:235872/149‑1 (MQ=255)                                                                                                                                    cGTTAGCCCTTTGGAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGt                <  2:978433/149‑1 (MQ=255)                                                                                                                                      ttAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCt              >  1:32506/1‑149 (MQ=255)                                                                                                                                      ttAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCt              <  2:947576/149‑1 (MQ=255)                                                                                                                                         gCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAg           >  1:904631/1‑149 (MQ=255)                                                                                                                                            cgttGTAGGCCAGATAAGCCGCGGCA‑CGTGCGTATCTCGAATAAACACAGCGCTCTTTGCGGGGCTGTGCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCt        <  2:407926/147‑1 (MQ=25)                                                                                                                                            cTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCt        <  1:331651/149‑1 (MQ=255)                                                                                                                                                  aGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCAtt  <  2:592985/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     CACGTACCGGAGGGCAGGTGACTGCAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATT  >  NC_000913_3_pae_tpiA/4549556‑4549849

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.