New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 4549702	NA (NA)	5 (0.090)	5/270	6.6	NA	noncoding (4/36 nt)	REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913_3_pae_tpiA	= 4549734	NA (NA)					noncoding (36/36 nt)	REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

TGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCA  >  NC_000913_3_pae_tpiA/4549589‑4549879                                                                                                                                                   |                                                                                                                                                  tgCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAACTGAGAGGACATTGCTCATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGGGT‑GGCATCTGGCATa                                                                                                                                                >  1:727905/1‑149 (MQ=38) tgCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATa                                                                                                                                                >  1:729343/1‑149 (MQ=255) tgCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATa                                                                                                                                                >  1:87093/1‑149 (MQ=255)   cAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATaaa                                                                                                                                              <  1:336497/149‑1 (MQ=255)     aTCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCTAGATAAGACGCGTCAGCGT‑CGCATCTGCCATAAACa                                                                                                                                            >  1:561541/1‑149 (MQ=255)     aTCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACa                                                                                                                                            >  2:96928/1‑149 (MQ=255)       cGATTAGTGGCGTGACTTTTGTTTACCAATATAGAAAGCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACaaa                                                                                                                                          <  2:791334/149‑1 (MQ=255)        gATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAg                                                                                                                                         >  2:148156/1‑149 (MQ=255)        gATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAg                                                                                                                                         >  1:775198/1‑149 (MQ=255)                     aCTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGATgg                                                                                                                            >  2:738901/1‑149 (MQ=255)                      cTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGt                                                                                                                           <  1:503390/149‑1 (MQ=255)                      cTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGt                                                                                                                           <  1:503266/149‑1 (MQ=255)                       ttttGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTCCTGGTc                                                                                                                          >  2:235872/1‑149 (MQ=255)                        tgtgtgTATCTATAAAGAAAGGACAGGACATTGCTAATTCTGGTACGCAATATTACCTGGAGCTAAAGACCTGCACGTTAGCCCTTTGTAGGCCAGGTAAGTGGCGTCAGCGT‑CGCATCTGGGAGAAGCAAAGCGCACTTTGCTGGTCt                                                                                                                         <  2:226187/147‑1 (MQ=255)                            tttATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACaaa                                                                                                                                          <  2:109794/128‑1 (MQ=255)                            tttATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACaaa                                                                                                                                          >  1:109794/1‑128 (MQ=255)                            tttATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTc                                                                                                                     >  1:577507/1‑149 (MQ=255)                            tttATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGAACTTTGCTTGTCTCTTc                                                                                                                     >  2:20225/1‑149 (MQ=255)                                tCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGAATGTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCt                                                                                                                 >  1:676337/1‑149 (MQ=255)                                 cAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACaaa                                                                                                                                          >  2:125186/1‑123 (MQ=255)                                 cAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACaaa                                                                                                                                          <  1:125186/123‑1 (MQ=255)                                        gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTTCCCTCAc                                                                                                              >  2:445937/1‑144 (MQ=255)                                        gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTTCCCTCAc                                                                                                              <  1:445937/144‑1 (MQ=255)                                              acaGGACATTGCTAATGCTGGTACGCAATGTTGCGTGAAGCTAATAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCctct                                                                                                   <  2:87093/149‑1 (MQ=255)                                                aGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTcc                                                                                                 >  1:757561/1‑149 (MQ=255)                                                 ggACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTccc                                                                                                >  2:723741/1‑149 (MQ=255)                                                     aTTGGTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGa                                                                                            <  1:759103/149‑1 (MQ=255)                                                      ttGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAg                                                                                           <  1:552481/149‑1 (MQ=255)                                                      ttGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTAACCCTAACCCTCTCCCCGGAg                                                                                           >  2:76176/1‑149 (MQ=255)                                                       tGCTAACGCTGGTAGGTAACATCACGGGCAGCTAAAAACCGGTACGTTCGCCCTTTGTAGGCCACATAAGACGCGTCAGCGC‑CGCACCTGGCATAAACAAAGCGCACTTTGCTGGACTGTTCCCCTCATCCTAACCCTCTCCCTGGAgg                                                                                          <  2:568161/149‑1 (MQ=255)                                                        gCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAggg                                                                                         >  1:328621/1‑149 (MQ=255)                                                           aaTGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCg                                                                                      >  2:266569/1‑149 (MQ=255)                                                              gCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAgg                                                                                   <  1:656264/149‑1 (MQ=255)                                                               cTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCGAACCCTCTCCCCGGAGGGGCGAggg                                                                                  <  1:892689/149‑1 (MQ=255)                                                                tGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTGACCCTAACCCTCTCCCCGGAGGGGCGAgggg                                                                                 >  1:14329/1‑149 (MQ=255)                                                                      gCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTc                                                                           >  2:858816/1‑149 (MQ=255)                                                                      gCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACACGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGAGCGAGGGGACTGTc                                                                           >  1:176234/1‑149 (MQ=255)                                                                        aaTATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTACCCCCCTCCCCGGAGGGGCGAGGGGACTGTCCg                                                                         >  2:644974/1‑149 (MQ=255)                                                                        aaTATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCg                                                                         <  1:868829/149‑1 (MQ=255)                                                                                 tgacgatAAAAACCTGCACGTTAGCCCTTTATAGGCCAGATTAGTCGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTTCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACAttt                                                                <  1:431319/143‑1 (MQ=38)                                                                                    aGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTa                                                             <  1:49601/149‑1 (MQ=255)                                                                                      cTAACAACCTGCACGGTAGGCCTTTGTAGGCCAGATAAGACTGGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCCCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGa                                                           <  2:280439/149‑1 (MQ=38)                                                                                      cTAAAAACCTGCACGGTAGCCCTCTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGa                                                           <  1:593691/149‑1 (MQ=255)                                                                                       tAAAAACCTGCACGTTAGCCCTTTGGAGGCCAGATAAGAAACGTCAGCGT‑CACATCTGGCATAAACAAAACGCACTTTGCTGGGCTGTTCCCCCCACCCCACCTCTCCACCCTTATATGCGGAGACACTGTCCGGGCAGATTTTGAgca                                                          >  2:104944/1‑147 (MQ=16)                                                                                           aaCCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTg                                                      <  1:652010/149‑1 (MQ=255)                                                                                           aaCCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTg                                                      <  1:573783/149‑1 (MQ=255)                                                                                              cTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGtca                                                   <  2:65575/149‑1 (MQ=255)                                                                                               tGCACTTTAGCCCTTTGTAGGCCAGATAAGCCGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCTTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGtcat                                                  <  1:764579/149‑1 (MQ=255)                                                                                               tGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGACACATTTTTAGACTTTTtcgt                                                  >  2:431611/1‑147 (MQ=255)                                                                                                gCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGtcatc                                                 <  1:739549/149‑1 (MQ=255)                                                                                                 ggcgtgcgCCCTTTGGAGGTGAGATCAGACGCGTCACTGG‑CGCATCTGGCATAAACAAAGCTGATTTTGCTGGTCTGTTCGCCTCCCCCTAACCCTCTCCCCGGAGAGGCGAGGGGACTGTCCGGGCACATTTTTAAACTTTGtcatca                                                <  2:298770/142‑1 (MQ=255)                                                                                                 cACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGtcatca                                                <  1:235872/149‑1 (MQ=255)                                                                                                 cACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGtcatca                                                <  2:823883/149‑1 (MQ=255)                                                                                                   cGTTAGCCCTTTGGAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGt                                              <  2:978433/149‑1 (MQ=255)                                                                                                     ttAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCt                                            >  1:32506/1‑149 (MQ=255)                                                                                                     ttAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCt                                            <  2:947576/149‑1 (MQ=255)                                                                                                        gCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAg                                         >  1:904631/1‑149 (MQ=255)                                                                                                           cgttGTAGGCCAGATAAGCCGCGGCA‑CGTGCGTATCTCGAATAAACACAGCGCTCTTTGCGGGGCTGTGCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCt                                      <  2:407926/147‑1 (MQ=25)                                                                                                           cTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCt                                      <  1:331651/149‑1 (MQ=255)                                                                                                                 aGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCAtt                                <  2:592985/149‑1 (MQ=255)                                                                                                                   gCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTgg                              <  1:858816/149‑1 (MQ=255)                                                                                                                   gCCAGATAAGACGCGGCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCTCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTgg                              <  2:248604/149‑1 (MQ=255)                                                                                                                     caaaTAAGACGCGTCAGCGT‑CGCACCTGACATAAACAAAGCGCACCATGCTGGTCTGTTCCCCTCACCCGAACCCACTCCCCTGAGGCACGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCa                            <  2:727905/146‑1 (MQ=255)                                                                                                                     cAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCa                            <  2:729343/149‑1 (MQ=255)                                                                                                                      agagAAGACGCGTCAGCGT‑CGCATCTGGCCACGACAACATTCACCGTGCGGGGCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGTACATTCTTCGATCATGTCACCAGTCTGTGTCTGATCTTGGCAg                           <  2:942684/149‑1 (MQ=12)                                                                                                                       gATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAgg                          <  1:708186/149‑1 (MQ=255)                                                                                                                       gATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCCGGCACATTTTTAGACTTTGTCATCCGTCTGCGACTGCCATTgcccgg                          >  2:183490/1‑144 (MQ=38)                                                                                                                         tAAGACACGCCAGTGT‑CGCATCTCGCATAAACAAACCGCACTTTGCTGATCTGTTCCCCCCACCCTAACCCTCTCCCCCGACGGGCGAGGGGACTGTCCGGGCACATTCTTACACTCTGCCATCATTCTGAGCCTTCCATTGGCAGGct                        <  2:105679/149‑1 (MQ=255)                                                                                                                           aGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGCATGTTACCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGGGCCTGCCATTGGCAGGctct                      >  1:930102/1‑149 (MQ=255)                                                                                                                             aCGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTgg                    <  2:328621/149‑1 (MQ=255)                                                                                                                               gcgTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGTTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGgtg                  <  1:286329/149‑1 (MQ=255)                                                                                                                                cctCAGCGT‑CGCATCTGGCATAATCAAAGCTCACTTTGCTGGTCTGTTCCCCTCACCCGAACCCTCTCCCCGGCGGGGCGAGGGGACTGTCCTCGTCCATTTTTATATTTTTTCATCCGTCTGAGCCTGCCATTGGCAGGCTCTGgtgt                 <  2:768337/147‑1 (MQ=255)                                                                                                                                        t‑CGCATCTGGCATAAACACAGCACCCCTCATCGGTGTTTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCCCATTTTTAGACTTTGTCATCAGTCTGTGCCTGCCATTGGCGGGGTCTTGTTTCCTTTTaa         >  2:951369/1‑148 (MQ=21)                                                                                                                                             aTCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTa     <  1:334794/149‑1 (MQ=255)                                                                                                                                                tGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCa  >  1:511018/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                  TGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAAAAACCTGCACGTTAGCCCTTTGTAGGCCAGATAAGACGCGTCAGCGT‑CGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCTCCCCGGAGGGGCGAGGGGACTGTCCGGGCACATTTTTAGACTTTGTCATCAGTCTGAGCCTGCCATTGGCAGGCTCTGGTGTCCTTTTACGCTACCA  >  NC_000913_3_pae_tpiA/4549589‑4549879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.