| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 2729630 = | NA (NA) | 11 (0.290) | 7/274 | 4.0 | NA | noncoding (1528/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_pae_tpiA | 2729652 = | NA (NA) | noncoding (1506/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTAA > NC_000913_3_pae_tpiA/2729483‑2729714 | gtAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAGGGAGGTGATCCaa > 1:78717/1‑149 (MQ=255) aGGGTGAGCTTTCATTAATAGATAGCGAACTGTCTTATGCTCTTCAGCGTCCCTCCCAACGTGTAAACGCCTTG‑CTATTCACTTTTCATCATACAAGCTGTGTGAGCACTGCCAAGTACGTTTCTTTAATGTAAGGAGGTGATCCAAcc < 2:284338/149‑1 (MQ=14) aGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGCGGTGATCCAAcc > 1:151391/1‑149 (MQ=255) gTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCa < 1:579071/149‑1 (MQ=40) aGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGCTGATCCAACCGCAGGt > 2:182624/1‑149 (MQ=255) tttCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCAAACGCGTAAAAGCCTTG‑CTATTAACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGCTGACCAAACCGCAGGTTcc > 2:99492/1‑149 (MQ=14) ttCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTccc < 2:183311/149‑1 (MQ=255) ttAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTAc > 1:656476/1‑149 (MQ=255) aaCGGCCTTATTCTCTTCAGCCTCACTCCCAAAGCGTCACAGCCATGTCCACT‑ATGATTCGTCAGTGAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTa < 2:665482/149‑1 (MQ=11) aCGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTAc < 1:352429/149‑1 (MQ=40) ttATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGGTCCCCTACGGTTACCTTGTTACGACTTc > 2:371796/1‑149 (MQ=255) ttCAGCCTCACTCCCAACGCGTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGt > 1:295984/1‑149 (MQ=255) aGCCTCACTCCCAACGCGTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCAt < 1:544938/149‑1 (MQ=40) aGCCTCACTCCCAACGCGTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTAAt > 1:122487/1‑149 (MQ=255) tCACTCCCAACGCGTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAAt > 2:519700/1‑149 (MQ=255) cACTCCCAACGCGTAAACGACTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCCGGTTCCCCTACGGTTACCTTGTTACGTCTTCACCCCAGGCAAGacgt > 2:83467/1‑146 (MQ=14) ccAACGCGTAAACGCCTTG‑CTATTCGCTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACaaa < 1:535962/149‑1 (MQ=255) ccAACGCGTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACaaa < 1:519700/149‑1 (MQ=40) gcgTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGt > 1:377952/1‑149 (MQ=39) tAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAg > 2:271161/1‑149 (MQ=255) cTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGCTAGGCGCCCTc < 1:426990/149‑1 (MQ=255) tATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGaa < 1:632761/149‑1 (MQ=35) tCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGCAGGt > 2:312496/1‑149 (MQ=17) cACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCGTCTTTAATGTAAGGAGGGGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGtt < 2:247853/149‑1 (MQ=12) cTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTaa < 2:553267/149‑1 (MQ=11) | GTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTAA > NC_000913_3_pae_tpiA/2729483‑2729714 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |