New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	2729630 =	NA (NA)	11 (0.290)	7/274	4.0	NA	noncoding (1528/1542 nt)	rrsG	16S ribosomal RNA of rrnG operon
	?	NC_000913_3_pae_tpiA	2729652 =	NA (NA)					noncoding (1506/1542 nt)	rrsG	16S ribosomal RNA of rrnG operon
Rejected: Coverage evenness skew score above cutoff.

AACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTAA  >  NC_000913_3_pae_tpiA/2729512‑2729714                                                                                                                                              |                                                               aaCGGCCTTATTCTCTTCAGCCTCACTCCCAAAGCGTCACAGCCATGTCCACT‑ATGATTCGTCAGTGAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTa                                                        <  2:665482/149‑1 (MQ=11)  aCGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTAc                                                       <  1:352429/149‑1 (MQ=40)        ttATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGGTCCCCTACGGTTACCTTGTTACGACTTc                                                 >  2:371796/1‑149 (MQ=255)                ttCAGCCTCACTCCCAACGCGTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGt                                         >  1:295984/1‑149 (MQ=255)                   aGCCTCACTCCCAACGCGTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCAt                                      <  1:544938/149‑1 (MQ=40)                   aGCCTCACTCCCAACGCGTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTAAt                                      >  1:122487/1‑149 (MQ=255)                       tCACTCCCAACGCGTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAAt                                  >  2:519700/1‑149 (MQ=255)                        cACTCCCAACGCGTAAACGACTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCCGGTTCCCCTACGGTTACCTTGTTACGTCTTCACCCCAGGCAAGacgt                                 >  2:83467/1‑146 (MQ=14)                             ccAACGCGTAAACGCCTTG‑CTATTCGCTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACaaa                            <  1:535962/149‑1 (MQ=255)                             ccAACGCGTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACaaa                            <  1:519700/149‑1 (MQ=40)                                  gcgTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGt                       >  1:377952/1‑149 (MQ=39)                                     tAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAg                    >  2:271161/1‑149 (MQ=255)                                            cTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGCTAGGCGCCCTc             <  1:426990/149‑1 (MQ=255)                                                  tATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGaa        <  1:632761/149‑1 (MQ=35)                                                     tCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGCAGGt     >  2:312496/1‑149 (MQ=17)                                                      cACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCGTCTTTAATGTAAGGAGGGGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGtt    <  2:247853/149‑1 (MQ=12)                                                        cTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTaa  <  2:553267/149‑1 (MQ=11)                                                                                                                                              |                                                               AACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTG‑CTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTAA  >  NC_000913_3_pae_tpiA/2729512‑2729714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.