New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	2282818 =	32 (1.090)	3 (0.110)	3/258	3.9	9.3%	intergenic (+17/+122)	rplY/yejK	50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein
	?	NC_000913_3_pae_tpiA	2282846 =	NA (NA)					intergenic (+45/+94)	rplY/yejK	50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAGCTGAATTCTACAGCGAAGTTCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGG  >  NC_000913_3_pae_tpiA/2282674‑2282961                                                                                                                                                  |                                                                                                                                                aaGCTGAATTCTACAGCGAAGTTCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑aaaaa                                                                                                                                             >  2:477193/1‑149 (MQ=255)                       tCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGAATTCGTTCTCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGttttt                                                                                                                       <  1:486595/149‑1 (MQ=255)                          gACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAACGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGt                                                                                                                    >  2:85807/1‑149 (MQ=255)                                         cGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATTGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGc                                                                                                     <  2:33971/149‑1 (MQ=255)                                               aGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTATTGTATCTGCAGATTATGCCTGAtt                                                                                               >  2:237326/1‑149 (MQ=255)                                                 aaaTCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTAc                                                                                             >  2:192715/1‑149 (MQ=255)                                                 aaaTCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTAc                                                                                             >  2:192714/1‑149 (MQ=255)                                                  aaTCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTACGCCTGATTACg                                                                                            <  1:324371/149‑1 (MQ=255)                                                        aGTTAAAGCTCAGGACGTACAGCGGCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTAtt                                                                                       <  2:189485/149‑1 (MQ=255)                                                                cgcAGGACGCACCGGGTGAGCCGTACAAACCGAAGCTGCAGCACATCGACTGCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAATCCCCGCTGCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTAttttt                                                                              <  2:348488/147‑1 (MQ=255)                                                                         tACAGCGTCACCCGGACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCa                                                                     <  1:306104/149‑1 (MQ=255)                                                                              ccttaCCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGAGTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATaa                                                                <  2:84170/145‑1 (MQ=255)                                                                              cGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATaa                                                                <  1:85807/149‑1 (MQ=255)                                                                               gTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGCTTACGGTATTGCTATTTTTTGCAGGCCAGATAAg                                                               >  2:292708/1‑149 (MQ=255)                                                                                  aCCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTGCGGTATTGCTATTTTTTGCAGGCCAGATAAGGCg                                                            >  1:354220/1‑149 (MQ=255)                                                                                      gTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCa                                                        >  1:289379/1‑149 (MQ=255)                                                                                       tACAAACCGAAGCTGCAGCACATCGACTGCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGACGGGACAAGGCGTTCAc                                                       >  2:339764/1‑149 (MQ=255)                                                                                        aCAATCCGAAGCTGCAGCACATCGGCTTCCTTCGCACTTAATTGTTAAATAATTTGT‑AAAAAACCCCGTTTCTGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCAcg                                                      <  1:220847/149‑1 (MQ=255)                                                                                         cAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCAcgc                                                     <  1:316204/149‑1 (MQ=255)                                                                                            aCCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGGGGGGTTTTTTGTATCTGCAGATTATTCCTGATTACGGTATTGCTATTTTTTGCAGGGCAGATAAGGCGTTCAcggcgc                                                  >  1:238418/1‑149 (MQ=255)                                                                                            aCCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCAcgccgc                                                  >  1:288128/1‑149 (MQ=255)                                                                                                      cagcaCATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCAtt                                        <  1:192715/149‑1 (MQ=255)                                                                                                      cagcaCATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCAtt                                        <  1:192714/149‑1 (MQ=255)                                                                                                           caTCGACTTCGTTCGCGCTGAATTGCTGAATAAGTTGT‑AAAAACCCCCGCGCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTGTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATACAGaa                                   <  2:322665/149‑1 (MQ=255)                                                                                                                  ttcgttcgCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTGTCTGCAGATTGTGCCTGATTACGGTGTTCCTTTGTGAAGCTGCTCAGATAATGCGTGCACGCCGCCTCTGTCATTCAGACCACaaaa                            >  2:239652/1‑149 (MQ=255)                                                                                                                  ttcgttcgCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATCTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACaaaa                            <  1:340596/149‑1 (MQ=255)                                                                                                                      ttcgCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGa                        >  2:376371/1‑149 (MQ=255)                                                                                                                       tcgCGCTTAATTGCTGAATAAGTTGT‑AAGAAACCCCGATCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGACTACAGCATAGCTATTTTTTGCAGGCCAGCTATAGCTGTCACGCCGCATCTGCCATTAAGCACACGAAACCgca                       >  2:149479/1‑147 (MQ=255)                                                                                                                                atggccgaagaaGTCGT‑AAAAAACGCCGCGTCGGCGGGGTTTTTTGTATCTGCAGATTATGCATCACTACGGTATTGCCATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACATAAAACCGATTCATTgccg              <  2:173797/143‑1 (MQ=37)                                                                                                                                   gCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCa           >  1:57902/1‑149 (MQ=255)                                                                                                                                     ggAATAAGGTGT‑AAAAAGCCCCGCTCCGGCGGGAGTTTTTGGATTTGGAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGa         <  2:354671/148‑1 (MQ=39)                                                                                                                                            gTTGT‑AAAAAACCCCGCCCCGGAGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCAGTCAGCACACAAAACCCATTAATTGCCCCCAGACGTCCgg  >  2:422249/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                AAGCTGAATTCTACAGCGAAGTTCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGG  >  NC_000913_3_pae_tpiA/2282674‑2282961

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.