New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	2282818 =	32 (1.090)	3 (0.110)	3/258	3.9	9.3%	intergenic (+17/+122)	rplY/yejK	50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein
	?	NC_000913_3_pae_tpiA	2282846 =	NA (NA)					intergenic (+45/+94)	rplY/yejK	50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGCAATTGGTCGCGCAAATT  >  NC_000913_3_pae_tpiA/2282699‑2282984                                                                                                                                                     |                                                                                                                                           gACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAACGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGt                                                                                                                                           >  2:85807/1‑149 (MQ=255)                cGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATTGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGc                                                                                                                            <  2:33971/149‑1 (MQ=255)                      aGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTATTGTATCTGCAGATTATGCCTGAtt                                                                                                                      >  2:237326/1‑149 (MQ=255)                        aaaTCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTAc                                                                                                                    >  2:192715/1‑149 (MQ=255)                        aaaTCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTAc                                                                                                                    >  2:192714/1‑149 (MQ=255)                         aaTCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTACGCCTGATTACg                                                                                                                   <  1:324371/149‑1 (MQ=255)                               aGTTAAAGCTCAGGACGTACAGCGGCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTAtt                                                                                                              <  2:189485/149‑1 (MQ=255)                                       cgcAGGACGCACCGGGTGAGCCGTACAAACCGAAGCTGCAGCACATCGACTGCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAATCCCCGCTGCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTAttttt                                                                                                     <  2:348488/147‑1 (MQ=255)                                                tACAGCGTCACCCGGACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCa                                                                                            <  1:306104/149‑1 (MQ=255)                                                     ccttaCCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGAGTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATaa                                                                                       <  2:84170/145‑1 (MQ=255)                                                     cGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATaa                                                                                       <  1:85807/149‑1 (MQ=255)                                                      gTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGCTTACGGTATTGCTATTTTTTGCAGGCCAGATAAg                                                                                      >  2:292708/1‑149 (MQ=255)                                                         aCCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTGCGGTATTGCTATTTTTTGCAGGCCAGATAAGGCg                                                                                   >  1:354220/1‑149 (MQ=255)                                                             gTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCa                                                                               >  1:289379/1‑149 (MQ=255)                                                              tACAAACCGAAGCTGCAGCACATCGACTGCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGACGGGACAAGGCGTTCAc                                                                              >  2:339764/1‑149 (MQ=255)                                                               aCAATCCGAAGCTGCAGCACATCGGCTTCCTTCGCACTTAATTGTTAAATAATTTGT‑AAAAAACCCCGTTTCTGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCAcg                                                                             <  1:220847/149‑1 (MQ=255)                                                                cAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCAcgc                                                                            <  1:316204/149‑1 (MQ=255)                                                                   aCCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGGGGGGTTTTTTGTATCTGCAGATTATTCCTGATTACGGTATTGCTATTTTTTGCAGGGCAGATAAGGCGTTCAcggcgc                                                                         >  1:238418/1‑149 (MQ=255)                                                                   aCCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCAcgccgc                                                                         >  1:288128/1‑149 (MQ=255)                                                                             cagcaCATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCAtt                                                               <  1:192715/149‑1 (MQ=255)                                                                             cagcaCATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCAtt                                                               <  1:192714/149‑1 (MQ=255)                                                                                  caTCGACTTCGTTCGCGCTGAATTGCTGAATAAGTTGT‑AAAAACCCCCGCGCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTGTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATACAGaa                                                          <  2:322665/149‑1 (MQ=255)                                                                                         ttcgttcgCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTGTCTGCAGATTGTGCCTGATTACGGTGTTCCTTTGTGAAGCTGCTCAGATAATGCGTGCACGCCGCCTCTGTCATTCAGACCACaaaa                                                   >  2:239652/1‑149 (MQ=255)                                                                                         ttcgttcgCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATCTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACaaaa                                                   <  1:340596/149‑1 (MQ=255)                                                                                             ttcgCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGa                                               >  2:376371/1‑149 (MQ=255)                                                                                              tcgCGCTTAATTGCTGAATAAGTTGT‑AAGAAACCCCGATCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGACTACAGCATAGCTATTTTTTGCAGGCCAGCTATAGCTGTCACGCCGCATCTGCCATTAAGCACACGAAACCgca                                              >  2:149479/1‑147 (MQ=255)                                                                                                       atggccgaagaaGTCGT‑AAAAAACGCCGCGTCGGCGGGGTTTTTTGTATCTGCAGATTATGCATCACTACGGTATTGCCATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACATAAAACCGATTCATTgccg                                     <  2:173797/143‑1 (MQ=37)                                                                                                          gCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCa                                  >  1:57902/1‑149 (MQ=255)                                                                                                            ggAATAAGGTGT‑AAAAAGCCCCGCTCCGGCGGGAGTTTTTGGATTTGGAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGa                                <  2:354671/148‑1 (MQ=39)                                                                                                                   gTTGT‑AAAAAACCCCGCCCCGGAGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCAGTCAGCACACAAAACCCATTAATTGCCCCCAGACGTCCgg                         >  2:422249/1‑149 (MQ=255)                                                                                                                          aaaaaCCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGc                   >  2:388514/1‑149 (MQ=255)                                                                                                                          aaaaaCCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGc                   >  2:388541/1‑149 (MQ=255)                                                                                                                                cccGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGCAATTgg             <  1:299882/149‑1 (MQ=255)                                                                                                                                 ccGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTACAAGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCAAGACGCCCGGCGCTGCCATTGGt            >  2:290885/1‑149 (MQ=255)                                                                                                                                           ggggTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGCAATTGGTCGCGCAAAtt  <  1:388514/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                           GACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGT‑AAAAAACCCCGCTCCGGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGCAATTGGTCGCGCAAATT  >  NC_000913_3_pae_tpiA/2282699‑2282984

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.