New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	3383284 =	42 (1.440)	4 (0.150)	4/258	3.4	9.5%	intergenic (+17/+46)	degS/mdh	serine endoprotease, periplasmic/malate dehydrogenase, NAD(P)‑binding
	?	NC_000913_3_pae_tpiA	3383314 =	38 (1.420)					intergenic (+47/+16)	degS/mdh	serine endoprotease, periplasmic/malate dehydrogenase, NAD(P)‑binding
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAGGGTACCGATAGATTTACGCTCTTCCACGCCGTTTTTAC  >  NC_000913_3_pae_tpiA/3383166‑3383457                                                                                                                                                      |                                                                                                                                                gCGGAAATTCGCCCTGGTGCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTtta                                                                                                                                                 <  1:211295/149‑1 (MQ=255)   ggAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCACAAC‑AAAAAACCGGAGTCTGTTCTCCGGTGTTttatt                                                                                                                                               >  1:469266/1‑149 (MQ=255)    gAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTttatta                                                                                                                                              <  1:7267/149‑1 (MQ=255)                    cGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCGAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTAc                                                                                                                              <  2:513498/149‑1 (MQ=255)                      gTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAAC‑AAAAAACAGGAGTGTGTGCTCCGGGTTTGTATTATCGGCTAATCAATTACtt                                                                                                                            >  1:138682/1‑149 (MQ=255)                            ccTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGATGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAAc                                                                                                                      <  1:272445/149‑1 (MQ=255)                            ccTGTAGTAGTGATGCGTGATGATAAGCAGTTAACCACCCAGGACACCACTCAGGACTCCACAGCAATAAAAAAAAAAGTGCGATCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTCGTATATTATCCGCTAATCAATTACTTATTAAc                                                                                                                      >  2:252590/1‑149 (MQ=255)                              tGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCCATTAAGTCGTGCGCTCAAAAC‑AAACAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTGATCAATTACTTATTAACGa                                                                                                                    >  1:59912/1‑149 (MQ=255)                              tGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGa                                                                                                                    <  2:401020/149‑1 (MQ=255)                                 agtagtGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAAct                                                                                                                 <  1:111530/149‑1 (MQ=255)                                            gTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCacg                                                                                                      >  1:78154/1‑147 (MQ=255)                                             tgatgaTAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAggg                                                                                                     <  1:106929/149‑1 (MQ=255)                                                       cAGTTAACGCTGCAGGTGACCATTCAGCAATATCCGGCAACCAGTTAAGTCGTGCGATCAAAAC‑AAAAACCCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTGATTAACGACCTCTTCGCCCCGGGCGATCtcttt                                                                                           <  2:351995/149‑1 (MQ=255)                                                             aCGGTGCAGGTCACTATTGAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAg                                                                                     <  2:369075/149‑1 (MQ=255)                                                               gCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTCATAAATCACGAATAAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCg                                                                                   >  1:40182/1‑149 (MQ=255)                                                                 tGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTaa                                                                                                                       >  2:93696/1‑111 (MQ=255)                                                                 tGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTaa                                                                                                                       <  1:93696/111‑1 (MQ=255)                                                                  gaaGGTCACCATTCAGGAATATCCGGGAACCAATTAAGTCGTGCGCTCAAAACAAAAAAACCGGAGTCTGTGCGCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTa                                                                                 <  2:77707/147‑1 (MQ=255)                                                                     tgTCACCATTCAGGAATATCCTGCAACAAATTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCa                                                                             <  1:55415/148‑1 (MQ=255)                                                                      gTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAg                                                                            >  1:454876/1‑149 (MQ=255)                                                                      gTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAg                                                                            >  2:179698/1‑149 (MQ=255)                                                                      gTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAg                                                                            >  1:321698/1‑149 (MQ=255)                                                                        aaCCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCa                                                                          <  1:85306/148‑1 (MQ=255)                                                                         aCCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATc                                                                                                                                            >  1:268638/1‑82 (MQ=255)                                                                         aCCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATc                                                                                                                                            <  2:268638/82‑1 (MQ=255)                                                                               cAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAAc                                                                                                                      >  2:60820/1‑98 (MQ=255)                                                                               cAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAAc                                                                                                                      <  1:60820/98‑1 (MQ=255)                                                                                aGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCCGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTcc                                                                  >  2:290430/1‑149 (MQ=255)                                                                                   aaTATCCGGCAACCAATTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAgc                                                               <  1:437519/149‑1 (MQ=255)                                                                                              aCCAATTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGCGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTc                                                    >  2:450871/1‑149 (MQ=255)                                                                                                 aaTTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCaaa                                                 >  2:244908/1‑149 (MQ=255)                                                                                                  aTTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAAt                                                <  1:390254/149‑1 (MQ=255)                                                                                                  aTTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAAt                                                <  1:450871/149‑1 (MQ=255)                                                                                                           cgggcTCAAACG‑AAATAACCGCCTTCTGTGCTCCGGTTTTTTATTACCCGCTAATCAATTACTTACTAACGAACTCGTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAgg                                       <  2:404306/146‑1 (MQ=255)                                                                                                                tCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTAATTATTAACGAACTCTTCGCCCAGGGCGATATCTTTATTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAGGGTTcc                                  >  1:228176/1‑149 (MQ=255)                                                                                                                    aac‑aaaaAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAGGGTACCGATa                              <  1:179698/149‑1 (MQ=255)                                                                                                                             aCCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATACGCTCAGGGTACCCATAGATTTTCg                      >  2:49650/1‑149 (MQ=255)                                                                                                                              ccGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAGGGTACCGATAGATTTACGc                     >  1:367073/1‑149 (MQ=255)                                                                                                                                     ctggtcTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAGGGTACCGATAGATTTACGCTCTTCCa              <  2:419531/144‑1 (MQ=255)                                                                                                                                             cGGTTTTTTATTATCCGCTAATCAAGTACTGATTAACGAAATCTTCGCCCAGGACGATATCTTTCTTCGGGGTATCCAGCATAACTTCCAGGGCGTTCTGTTCAAAGGCGCTGAGGGTACAGCTAGATTTACGCTCTGCCA‑GCCCtttt     >  2:195679/1‑149 (MQ=255)                                                                                                                                                 tttttATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAGGGTACCGATAGATTTACGCTCTTCCACGCCGTTTTTAc  <  1:126272/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                GCGGAAATTCGCCCTGGTTCGGTGATCCCTGTAGTAGTGATGCGTGATGATAAGCAGTTAACGCTGCAGGTCACCATTCAGGAATATCCGGCAACCAATTAAGTCGTGCGCTCAAAAC‑AAAAAACCGGAGTCTGTGCTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAGGGTACCGATAGATTTACGCTCTTCCACGCCGTTTTTAC  >  NC_000913_3_pae_tpiA/3383166‑3383457

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.