New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	1697230 =	24 (0.850)	4 (0.150)	4/260	3.3	14.6%	noncoding (1697230/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	1697261 =	25 (0.960)					noncoding (1697261/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCTGTTGAATAGTGCGAAGGCACACTCTATTCGTATACTTTTCACTCTGAAATTGGTTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACG‑GTTGTTTACCGGTCCGTTAGTGTATTAATTGAGCTCCTGTACCCCACCACCGGAGACGGTGAGAATTTGTCCGCTTACCCAGCTCGCAGCAGGCGAGCAAAGGAACAGCGCTGCGTTAGCAATATCTTGCGGTTGGCCCAGACGTCTGATCGGCGTGTG  >  NC_000913_3_vch_tpiA/1697114‑1697407                                                                                                                                                     |                                                                                                                                                   tGCTGTTGAATAGTGCGAAGGCACACTCTATTCGTATACTTTTCACTCTGAAATTGGTTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACG‑GTTGTTTACCGGTc                                                                                                                                                   >  1:297630/1‑149 (MQ=255)                 gAAGGCACACTCTATTCGTATACTTTTCACTCTGAAATTGGTTAACCAAGCGCCTGGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACG‑GTTGTTTACCGGTCCGTTAGTGAATTAAta                                                                                                                                   >  1:471663/1‑148 (MQ=255)                          ctctATTCGTATACTTTTCACTCTGAAATTGGTTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACG‑GTTGTTTACCGGTCCGTTAGTGTATTAATTGAGCTCCTg                                                                                                                          >  1:195022/1‑149 (MQ=255)                                  gTATACTTTTCACTCTGAAATTGGTTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACG‑GTTGTTTACCGGTCCGTTAGTGTATTAATTGAGCTCCTGTAccccgc                                                                                                                  >  1:386510/1‑147 (MQ=255)                                              gtctGAAATTGGTTAATCAATAGCCGTGATTTTGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAATACGCACG‑GTTGTTTACCGGTCCGTTAGTGTATTAATTGAGCTCCTGTACCCCACCACCGGAGACgg                                                                                                      <  2:425697/148‑1 (MQ=255)                                              ctctGAAATTGGTTAACCAATAGCCGTGATGTGGCTGCCAGGTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACG‑GTTGTTTACCGGTCCGTTAGTGTATTAATTGAGCTCCTGTACCCCACCACCGGAGACgg                                                                                                      <  2:292908/149‑1 (MQ=255)                                                    aaTTGGTTAACCAATAGCCGTGATTTGGCTGCCAGTTATTCAGCAGAGACGTTAATGAGTTTATCCCGGTAAACAACACGTACG‑GTTGTCTACCGGTCCGGTAGTGTATTAATTGTGCTCCTGTACCCCACCACCGGAGACGGTGAGaa                                                                                                <  2:457787/149‑1 (MQ=255)                                                     aatGGTTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACG‑GTTGTTTACCGGTCCGTTAGTGTATTAATTGAGCTCCTGTACCCCACCACCGGAGACGGTGAGAAt                                                                                               <  2:99532/147‑1 (MQ=255)                                                     aTTGGTTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACTGTGGTGAGTTTATCCCGGTAAACAACACGCACG‑GTTGTTTACCGGTCCGTTAGTGTATTAATTGAGCTCCTGTACCCCACCCCCGGAGACGGTGAGAAt                                                                                               >  2:457404/1‑149 (MQ=255)                                                       tGGTTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACG‑GTTGTTTACCGGTCCGTTAGTGTATTAATTGAGCTCCTGTACCCCACCACCGGAGACGGTGAGAAttt                                                                                             <  1:96816/149‑1 (MQ=255)                                                         gTTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACG‑GTTGTTTGCCGGTCCGTTAGTGTATTAATTGAGCGCCTGTACCCCACCACCGGAGGCGGTGAGAATTTGt                                                                                           >  1:279181/1‑149 (MQ=255)                                                               cAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACG‑GTTGTTTACCGGTCCGTTAGTGTATTAATTGAGCTCCTGTACCCCACCACCGGAGACGGTGAGAATTTGTCCGCtt                                                                                     >  1:173003/1‑149 (MQ=255)                                                                              ggCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACG‑GTTGTTTACCGGTCAGTTAGTGTATTAATTGAGCTCCTGTACCCCACCCCCGGAGCCGGTGAGAATTTGTCCGCTTACCCAGCTCgcagaa                                                                      >  1:472436/1‑147 (MQ=255)                                                                               gCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACG‑GTTGTTTACCGGTCCGTTAGTGTATTAATTGAGCTCCTGTACCCCACCACCGGAGACGGTGAGAATTTGTCCGCTTACCCAGCTCGcagcag                                                                     <  2:42757/149‑1 (MQ=255)                                                                               gCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCCGTAAACAACACGCACG‑GTTGTTTACCGGTCCGTTAGTGTATTAATTGAGCTCCTGTACCCCACCACCGGAGACGGTGAGAATTTGTCCGCTTACCCAGCTCGcagcag                                                                     >  2:227289/1‑149 (MQ=255)                                                                                     aGTTATTTTGCAAAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACG‑GTTGTTTACCGGTCCGTTAGTGTATTAATTGAGCTCCTGGACCCCACCACCGGAGACGGTGAGAATTTGTCCGCTTACCCAGCTCGCAGCAGGCGAGc                                                               >  2:434828/1‑149 (MQ=255)                                                                                            tAGCTGGGACGGTGTTGAGTTTACCCCTGCAAGCTACACGCAGG‑TTTGTTTGCCGGTCCGTTAGTGTATTAATTGAGGCCCTGCACCCCACCACCGGAGACGGTGAGAATTTGTCCGCTTACCCAGCTCGCAGCAGGCGAGCAAAGGaa                                                        <  2:14510/149‑1 (MQ=255)                                                                                                      gTTGATGAGTTTATCCCGGTAAACAACACGCACG‑GTTGTTTACCGGTCCGTTAGTGTATTAATTGAGCTCCTGTACCCCACCACCGGAGACGGTGAGAATTTGTCCGCTTACCCAGCTCGCAGCAGGCGAGCAAAGGAACAGCGCTGCg                                              >  2:444804/1‑149 (MQ=255)                                                                                                         gatgaGTTTATCCCGGTAAACAACACGCACG‑GTTGTTTACCGGTCCGTTAGTGTATTAATTGAGCTCCTGTACCCCACCACCGGAGAGGGTGAGAATTTGTCCGCTTACCCAGCTCGCAGCAGGCGAGCAAGGGAACAGCGCTGCGttg                                           >  2:85759/1‑148 (MQ=255)                                                                                                            gaGTTTATCCCGGTAAACAACACGCACG‑GTTGTTTACCGGTCCGTTAGTGTATTAATTGAGCTCCTGTACCCCACCACCGGAGACGGTGAGAATTTGTCCGCTTACCCAGCTCGCAGCAGGCGAGCAAAGGAACAGCGCTGCGTTAGCa                                        >  1:423410/1‑149 (MQ=255)                                                                                                                acggaccGGTAAACAAC‑CGTGCGTGTTGTTTACCGGTCCGTTAGTGTATTAATTGAGCTCCTGTACCCCACCACCGGAGACGGTGAGAATTTGTCCGCTTACCCAGCTCGCAGCAGGCGa                                                                 <  1:465699/115‑1 (MQ=37)                                                                                                                      cGGTAAACAACACGCACG‑GTTGTTTACCGGTCCGTTAGTGTATTAATTGAGCTCCTGTACCCCACCACCGGAGACGGTGAGAATTTGTCCGCTTACCCAGCTCGCAGCAGGCGAGCAAAGGAACAGCGCTGCGTTAGCAATATCTTGCg                              <  2:173003/149‑1 (MQ=255)                                                                                                                       ggTAAACAACACGCACG‑GTTGTTTACCGGTCCGTTAGTGTATTAATTGAGCTCCTGTACCCCACCACCGGAGACGGTGAGAATTTGTCCGCTTACCCAGCTCGCAGCAGGCGAGCAAAGGAACAGCGCTGCGTTAGCAATATCTTGCgg                             >  2:371377/1‑149 (MQ=255)                                                                                                                          aaaCAACACGCACG‑GTTGTTTACCGGTCCGTTAGTGTATTAATTGAGCTCCTGTACCCCACCACCGGAGACGGTGAGAATTTGTCCGCTTACCCAGCTCGCAGCAGGCGAGCAAAGGAACAGCGCTGCGTTAGCAATATCTTGCGGTTg                          <  1:371377/149‑1 (MQ=255)                                                                                                                             catctcgcacg‑GTTGTTTACCGGTCCGTTAGTGTATTAATTGAGCTCCTGGACCCCACCACCGGAGACGGTGAGAATTTGTCCGCTTACCCAGCTCGCAGCAGGCGAGCAAAGGAACAGCGCTGCGTTAGCAATATCTTGCGGTTGGcc                       <  1:284601/144‑1 (MQ=255)                                                                                                                             caacaCGCACG‑GTTGTTTACCGGTCCGTTAGTGTATTAATTGAGCTCCTGTACCCCACCACCGGAGACGGTGAGAATTTGTCCGCTTACCCAGCTCGCAGCAGGCGAGCAAAGGAACAGCGCTGCGTTAGCAATATCTTGCGGTTGGcc                       >  1:113023/1‑149 (MQ=255)                                                                                                                                                aCCGGTCCGTTAGTGGATTAATTGAGCTGCTGTACCCCACCACCGGAGACGGTGAGAATTTGTCCGCTTACCCAGCTCGCAGCAGGCGAGCAAAGGAACAGCGCTGCGTTAGCAATATCTTGCGGTTGGCCCAGACGTCTGATCGGCgt     <  1:318168/149‑1 (MQ=255)                                                                                                                                                   ggTCCGTTAGTGTATTAATTGAGCTCCTGTACCCCACCACCGGAGACGGTGAGAATTTGTCCGCTTACCCAGCTCGCAGCAGGCGAGCAAAGGAACAGCGCTGCGTTAGCAATATCTTGCGGTTGGCCCAGACGTCTGATCGGCGtgtg  >  1:123406/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TGCTGTTGAATAGTGCGAAGGCACACTCTATTCGTATACTTTTCACTCTGAAATTGGTTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACG‑GTTGTTTACCGGTCCGTTAGTGTATTAATTGAGCTCCTGTACCCCACCACCGGAGACGGTGAGAATTTGTCCGCTTACCCAGCTCGCAGCAGGCGAGCAAAGGAACAGCGCTGCGTTAGCAATATCTTGCGGTTGGCCCAGACGTCTGATCGGCGTGTG  >  NC_000913_3_vch_tpiA/1697114‑1697407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.