BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 203895	843 (0.260)	530 (0.150) +TTT	107/214	42.4	36.1%	intergenic (+279/+179)	JCVSYN2_00845/JCVSYN2_00850	lipoprotein/inorganic diphosphatase
*	?	CP016816	203896 =	955 (0.260)	530 (0.150) +TTT	107/214	42.4	36.1%	intergenic (+280/+178)	JCVSYN2_00845/JCVSYN2_00850	lipoprotein/inorganic diphosphatase
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1616 total aligned reads displayed.

TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTG‑‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTATGATAGA  >  CP016816/203768‑204023

 ttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTG‑‑t                                                                                                                                         >  1:3982403/1‑128 (MQ=255)

 ttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTG‑‑t                                                                                                                                         >  2:7417535/1‑128 (MQ=255)

   ttttttttttTAAAAAAAAAATAAAAATTTTTTATTTAAATCCATTTGTAAAAAATCCTTTGTTGTAGGGTTTTTA‑TTATAATTATCAACATTACAACGCTTTCAAATTG‑TATTTTTTAGG‑C‑TTG‑‑t‑t‑t                                                                                                                                     <  1:2541522/126‑1 (MQ=255)

    aTTTTTTTTTTAAAAAAAAATAAAAATTTTTAATTTAAATTAATTTTTTAAATATCATATTTTTTAGGTTTTTTA‑TTTTTATTATAAAAATTAAAACGCTTTAAATTTT‑TTTTTTTTTGG‑t‑ttt‑‑t‑t‑tt                                                                                                                                    <  1:5292193/128‑1 (MQ=255)

     ttttttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTG‑‑t‑t‑ttt                                                                                                                                   >  2:2653677/1‑128 (MQ=255)

       ttttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTG‑‑t‑t‑ttttt                                                                                                                                 >  1:624340/1‑128 (MQ=255)

       tttttaAAAAAAAAAAATAAAAATTTTTTATTTAAACCCCTTTTGAAAAAAGCCTTTGTTTTTTGTTTTTTA‑TTATAAATATTCACATTACAACGCTTTCAAACTG‑TATTTTTTAGG‑G‑GTG‑‑t‑t‑ttttt                                                                                                                                 <  1:647875/128‑1 (MQ=255)

        tttttATAAAAAAAAATAAAAATTTTTTATTTAAATTCATTTTTAAAAAATCCTATTTTCTTGGGTTTTTT‑TTTTAATTATCAAAAATAAAACCCTTTCAAATTG‑TTTTTTTTAGG‑G‑Ttt‑‑t‑t‑tttttt                                                                                                                                <  1:6562614/128‑1 (MQ=255)

          tttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTG‑‑t‑t‑tttttttt                                                                                                                              >  1:5975998/1‑128 (MQ=255)

             ttaAAAAAAAATAAAAATTTTTAATTTAAATTAATTTTTAAAAAAGAAATTGTTTTAGGCTTTTTA‑TTATATTTATAAAAATTAAAACGCTTTAAAATTT‑TTTTTTTTAGG‑T‑ttt‑‑t‑t‑ttttttttttt                                                                                                                           <  1:7218424/127‑1 (MQ=255)

              taAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTG‑‑t‑t‑ttttttttttt‑t                                                                                                                         >  2:5333349/1‑128 (MQ=255)

              taAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGATTTCAAAGTG‑TATTTTTTAGG‑C‑TTG‑‑t‑t‑tattttttttt‑t                                                                                                                         >  1:4925143/1‑128 (MQ=255)

              ataaaaaaaaTAAATATTTTTCTTTTAAAGCAAATTGTAAAAAACCCTATGTTCTATGCTTTTTA‑TTATACTTTTAAACATTACAACGCTTTCAAATTG‑TATTTTTTAGG‑C‑TTG‑‑t‑t‑ttttttttttt‑t                                                                                                                         <  1:6397214/126‑1 (MQ=255)

                aaaaaaaaTAAAAATTTTTCATTTAAATACATTTGTAAAAAATCCTATGTTCTATGCTTTTTA‑TTATACTTATCAAAATTAAAAATCTTTAAAATTT‑TATTTTTTATG‑A‑TTT‑‑t‑t‑tattttttttt‑ttt                                                                                                                       >  2:3648287/1‑128 (MQ=255)

                aaaaaaaaTAAAAAATTTTAATATAAACCCATTTTTAAAAAATCCTATGTTCTTTGCTTTTTT‑TTATAATTATCAAAATTACAACGCATTCAAACTG‑TATTTTTTAGG‑C‑TTG‑‑t‑t‑ttttttttttt‑ttt                                                                                                                       <  2:5183160/128‑1 (MQ=255)

                 aaaaaaaTAAAAATTTTTAATTTAAAGCCATTTTTAAAAAACCCTTTTGTAGTGGCTTTTTA‑TTATAATTAACAACAATAAAACGCTTTAAAAGGG‑TTTTTTTTAGG‑G‑TTG‑‑t‑t‑ttttttttttt‑tttt                                                                                                                      <  1:5149401/128‑2 (MQ=255)

                  aaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTG‑‑t‑t‑ttttttttttt‑ttttg                                                                                                                     >  2:6572445/1‑126 (MQ=255)

                        aaaaaaaTTTTAAATTAAACCAATTTTTAAAAAACCATTTGTTTTTGGTTTTTTT‑TTTTACTAATAAAAATTAAAACGCTTTAAAATTT‑TTTTTTTTTGG‑C‑Ttt‑‑t‑t‑ttttttttttt‑tttttgtaaaa                                                                                                               <  1:1549306/127‑9 (MQ=255)

                         taaaatTTTTTATTTTAAAGCATTTTTTAAAAATCATATTTTTATTTTTTTTTT‑TTATACTTATAAAAATTTAAAAGCTTTCAAATTG‑TTTTTTTTTTG‑G‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑At                                                                                                             <  1:4214150/127‑1 (MQ=255)

                         aaaattTTTTAAATTAAACACATTTTTAAAAAAGACTATGTTCTAGGGTTTTTT‑TTATATTTATTAACATTACAACGCTTTCAAAGTG‑TTTTTTTTAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑At                                                                                                             <  2:5526825/128‑1 (MQ=255)

                         aaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTC‑TATTTTTTAGG‑C‑TTG‑‑T‑T‑TTTTTTTTTTT‑TTT‑TTtaaa‑aat                                                                                                            >  2:5782652/1‑126 (MQ=255)

                          aaaatTTTTTATTTATACCCTTTTTTAAAAAACCATTTTTTTTTGGGTTTTTA‑TTTAAATTTTAAAAATTTAAACGCTTTTAAATTG‑TTTTTTTTTGGTT‑TTT‑‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑a                                                                                                           <  1:775947/128‑1 (MQ=255)

                          aaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AT‑a                                                                                                           >  2:1189734/1‑128 (MQ=255)

                          aaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑a                                                                                                           <  2:7756250/128‑1 (MQ=255)

                          aaaatTTTTAATTTAAAGCCATATGTAAAAAAGCCTATGTTCTATGCTTTTTA‑TTATACTTATCAACATTAAAACGCTTTCAAATTG‑TATTTTTTAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑a                                                                                                           <  2:1482189/128‑1 (MQ=255)

                           aaatTTTTTATTTAAATCCATTTTTAAAAAATCCTTTTTTTTATGTTTTTTA‑TTTTAATTTTAAAAATTAAAACGCTTTAAAATTG‑TATTTTTTATG‑G‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑aa                                                                                                          <  2:2048313/128‑1 (MQ=255)

                           aaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACTCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTG‑‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑aaa                                                                                                         >  2:6148380/1‑128 (MQ=255)

                            aatTTTTCATTTAAATCCATTTTATAAAATGTCTTTGTTGTAGGTTTTTTATTTATA‑TTATAAAAATTACAAAGTTTTCAAAGTT‑TTTTTTTTAGG‑C‑Ttt‑‑t‑t‑ttttttttttt‑ttttttgtaaaaata                                                                                                           <  2:2355190/128‑13 (MQ=255)

                             atTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTG‑‑T‑T‑TTTTTTTTTTT‑TTT‑TTTAaa‑aa‑aaaaa                                                                                                       >  1:6308358/1‑127 (MQ=255)

                             atTTTTCATTTAAAGCCATTTGTAAAAAAGACTATGTTCTAGGCTTTTTA‑TTATAATTATCAACATTACAACGATTTCAAAGTG‑TATTTTTTAGT‑C‑TTG‑‑T‑T‑TTTTTTTTTTTATTTATTAAAA‑AT‑aaa                                                                                                         >  2:3756923/1‑128 (MQ=255)

                               ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTG‑‑T‑TATTTTTTTTTTT‑TTT‑TTaaaa‑aatatagt                                                                                                       >  1:1974856/1‑121 (MQ=255)

                               ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTG‑‑T‑T‑TTTTTTTTTTT‑TTT‑GAAaaa‑tt‑aaaatta                                                                                                     >  2:7173294/1‑128 (MQ=255)

                                tttaatttaaAGCGATTTGTAAAAAATCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTAAAAGTG‑TATTTTTTTGG‑CTTTT‑‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAAAGTa                                                                                                     <  1:1773230/128‑1 (MQ=255)

                                tttCATTTAATTCAATTTGTAAATATTCCTATGTTCTTGGCTTTTTA‑TTATACTTATTAACATTACAACGCTTTCAAAGTG‑TTTTTTTTATG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAAAGTa                                                                                                     <  2:783725/128‑1 (MQ=255)

                                tttAATTTTAAGTCATTTTTAAAAAATTCTTTGTTATAGGTTTTTTA‑TTTTTATTATTAACATTAAAATGGTTTTAATGTT‑TTTTTTTTAGG‑G‑TTGTTT‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAAAGt                                                                                                      <  2:3530919/128‑1 (MQ=255)

                                   taTTTAAAGATATTTTTATAAAATCCTTTTTTATTTGTTTTTTA‑TTTTAATTTTAAAAATTAAAACGCTTTAAATGTG‑TTTTTTTTTTG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAAAGTAAGa                                                                                                  <  1:4094509/127‑1 (MQ=255)

                                       tatataaaTTTTTAAAAAAGAATTTTTTTTAGTTTTTTTT‑TTATAATTTTTAAATTTAAAAAGATTTAAAATTT‑TATTTTTTAGG‑G‑TTGTTT‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAAAGTAAGAttt                                                                                               <  2:624340/121‑1 (MQ=255)

                                       tAAAGCGATTTTTAAAAAAGAATTTTTTTTTTGCTTTTTA‑TTATAATTATAAACATTAAAACGCTTTCAAATTG‑TATTTTTTATG‑CTTTT‑‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAAAGTAAGATTTg                                                                                              <  1:3822986/128‑1 (MQ=255)

                                       tAAAACCATTTTTAAAAAATCCAATGTTCTTTGGTTTTTA‑TTTAACTTAACAACATTAAAACCCTTTCAAATTGTTTTTTTTTTGG‑T‑TTT‑‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAAAGTAAGATTTg                                                                                              <  1:6847324/128‑1 (MQ=255)

                                         aatccATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAAAATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTG‑‑‑‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAAAGTAAGATTTGGAT‑c                                                                                         <  2:2746710/125‑1 (MQ=255)

                                          aGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATATTTTAGG‑C‑TTG‑‑T‑T‑TTTTTTTTTTT‑TTT‑TTTTAA‑AA‑AAAAATTAAAtttttgtt                                                                                          >  1:5874006/1‑123 (MQ=255)

                                               tttGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AT‑AAAA‑TAAAAtttttataaaaaa                                                                                     >  1:7890527/1‑118 (MQ=255)

                                                   tgaaaaaGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTG‑‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAAATTAATATTTGGAT‑AAACCAAAAc                                                                                >  2:7642016/3‑128 (MQ=255)

                                                    aaaaaaGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AT‑AAAAGTAAGATTTGGAT‑CAACCataaa                                                                                >  2:4523603/1‑127 (MQ=255)

                                                      aaaaGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCATCATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGTTT‑T‑TTTTTTTTTTT‑TTT‑TTTAAA‑AT‑AAAATTAAGTTTTTGTA‑CAACCaaaaaa                                                                               >  1:7120533/1‑126 (MQ=255)

                                                      aaaaGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAAATTAAGAATTTGAA‑CAACCAAAAcaa                                                                              >  2:4391666/1‑126 (MQ=255)

                                                            ctagaacatAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑GTTAAA‑AT‑AAATGTATGATTTGGGT‑AGACCAAAACGATATaaa                                                                        >  2:920102/9‑128 (MQ=255)

                                                            cTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGTTT‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AA‑AAAAGTAATATTTGGAT‑AAACAAAAAatatttaa                                                                         >  1:843354/1‑124 (MQ=255)

                                                             tttgttgtAGGCTTTTTA‑TTATACTTATCAAAATTACAAAGCTTTCAAATTT‑TATTTTTTAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATCaaa                                                                       <  2:6675515/126‑1 (MQ=255)

                                                             tattttttttgttttttA‑TTTTATTTATAAAAATTAAAAAGTTTTATAATTT‑TTTTTTTTTTG‑G‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATCaaa                                                                       <  1:5528123/116‑1 (MQ=255)

                                                                aacatAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTACAAAGTG‑TATTTTTTAGG‑C‑TTT‑‑TAT‑TTTTTTTTTTT‑TTT‑GTAAAA‑AA‑AAAAGTAAAAATTTAAT‑CAACCAAAAACATAaaaaaaaa                                                                    >  1:979971/5‑128 (MQ=255)

                                                                 ttCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTG‑‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAAAGTAAGATTTGGAT‑AAACCAAAAATATTTAAAAAAAAt                                                                  >  2:3399208/1‑128 (MQ=255)

                                                                 acatAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AT‑AAAAATAAGATTTGAAT‑CAACCAAAAATATATaaaaaaaa                                                                   >  1:6172904/4‑128 (MQ=255)

                                                                  catAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTG‑‑T‑T‑TTTTTTTTTGT‑TTT‑GTAAAA‑AA‑ATAAGAAAGATTTGATA‑AAAACAGAACGAAATAAAAAAAAtt                                                                 >  1:6968740/3‑128 (MQ=255)

                                                                   cTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTG‑‑T‑T‑TTTTTTTTTTT‑TTT‑TTTAAA‑AA‑AAAAAAAAAATTTTTTTGCAACAAAAAGATTATAAAAAAAAtt                                                                 >  1:1340507/1‑128 (MQ=255)

                                                                   atAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑TTTAAA‑ATAAAAATTTATATTTTGAT‑AAAACAAAAATATTAAAAAAAAAt                                                                  >  1:4586633/2‑128 (MQ=255)

                                                                   atAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTG‑‑‑‑‑‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAATGTAAGTTTTGGAT‑AACCCAAACCAATATCAAAAAATTTaaa                                                              >  2:6430772/2‑128 (MQ=255)

                                                                    tAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGTTT‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AA‑AAAAATAAAATTTTTAT‑TACCAAAAACTAAATAAAAAAAAtt                                                                 >  2:1874846/1‑128 (MQ=255)

                                                                    tAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AT‑AAAAGTTAAATTTTGAT‑AAAACAATAATATTATAAAAAAATTa                                                                >  2:4928635/1‑128 (MQ=255)

                                                                    tAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AA‑AAAAGTAAAATTTGTTT‑ACACAAAAAATAAATaaaaaaaaaaa                                                                >  2:4048108/1‑125 (MQ=255)

                                                                      ggCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTG‑‑T‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AT‑AAAATTAATATTTTGAT‑AAACCAAAAATATATAAAAAAAATTaaaa                                                             >  2:1299568/1‑128 (MQ=255)

                                                                         tttttA‑TTTTAATTTTTAAAATTAAAACGATTTAAAATTG‑TTTTTTTTTGG‑CTTTT‑‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTaaaaaa                                                           <  1:734253/128‑1 (MQ=255)

                                                                          ttttA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AT‑AAAATTAATTTTTTTAT‑GATCCAAAAATATTTAAAAAAAATTtaaaaaa                                                          >  2:7561955/1‑128 (MQ=255)

                                                                           tttA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGTTT‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AT‑AAAAATAATATTTTGAA‑AAACAAAAAAT‑TATAAAAAAAATTaaaaaaaa                                                         >  2:2512235/1‑128 (MQ=255)

                                                                            tta‑ttaTACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AA‑AAAATTAACATTTTGAT‑AAAACAAAACTATaaaaaaaaaaaaaaaaaaaaa                                                        >  1:3520287/1‑127 (MQ=255)

                                                                              a‑ttatACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑GTTAAA‑AT‑AAAATAAAAATTTTGAT‑AAACAAAAACAATTTAAAAAAAATTTAAAAAAAtag                                                      >  1:2365376/1‑128 (MQ=255)

                                                                                   taCTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGTTT‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AT‑AAAATTAAGATTTGTTT‑CAACCAAAACTAAAAAAAAAAAATTAAAAAAAAtattta                                                   >  2:7050789/1‑127 (MQ=255)

                                                                                   taCTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AT‑AAAAGTAAAATTTTGAA‑AAAACAAAACTATAAAAAAAAAATTataaaaaaaatatta                                                  >  1:2168177/1‑121 (MQ=255)

                                                                                   taCTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AA‑AAAATTAATATTTTGAT‑AAACCAAAAATATATAAAAAAAATTAAAAAAAAtatttta                                                  >  1:7650740/1‑128 (MQ=255)

                                                                                    aCTTATCAACATTACAAAGCTTTCAAAGAG‑TATTTTTTAGG‑C‑TTG‑‑T‑T‑TTTTTTTTTTT‑TTT‑TAAAAATAT‑AAAATTAAAATATAGAA‑AAAAAAAAAATATAAAAAAAAATATAAAAAAAAtatttaag                                                 >  2:5900070/1‑128 (MQ=255)

                                                                                      ttttaaaaaTTACAAAGCTTTCAAAGTT‑TATTTTTTATG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAAtagtttagtt                                               <  2:6334786/120‑1 (MQ=255)

                                                                                       tttCAAAATTTCAACTCTTTAAAATTT‑TATTTTTTATG‑A‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTg                                              <  1:6095195/126‑1 (MQ=255)

                                                                                         tCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AT‑AAAAGTAAGATTTGGAT‑AAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGat                                            >  2:6074366/1‑127 (MQ=255)

                                                                                           aaCATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTG‑‑T‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AT‑AAAATTAATATTTGTAT‑AAACCAAAACTTTTTAAAAAAAATTAAAATAAATTGTTTTTTTTAGttg                                         >  2:3013409/1‑127 (MQ=255)

                                                                                             cATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AT‑AAAAATAATATTTTGAT‑CAACCAAAAATATATAAAAAAAATTAAAAAAAATAGTTTATTTTTGttta                                        >  1:4369536/1‑127 (MQ=255)

                                                                                               tttaaaCGTTTTTAATTTG‑TATTTTTTTGG‑T‑TTG‑‑‑‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAAt                                    <  1:2998307/124‑1 (MQ=255)

                                                                                                    aCGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGTTT‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AA‑AAAATTAATATTTTGAA‑AAACCAAAAAAATAAAAAAAAAAATAAAAAAAATATTTTTTTTTATTTTCaaaaat                                  >  2:6777806/1‑125 (MQ=255)

                                                                                                    aCGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AT‑AAAATTAATATTTTGAT‑AAACCAAAAATTTATAAAAAAAATTAAAAAAAATTTTTTATTTTAGTTTAAAAtagg                                 >  2:7946615/1‑125 (MQ=255)

                                                                                                    aCGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AT‑AAAATTAAATTTTTGAT‑AAACCAAAAAAATAACAAAAAAATTAAAAAAAATATTTTATTTGATTTTAAAATcat                                 >  1:7467245/1‑126 (MQ=255)

                                                                                                    aCGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAAAGTAAAAATTGTAT‑CAACCCAAAATAAATCAAAAAAATTAAAAAAAATAATTTAGTTTAGTTTCAAAtatt                                 >  2:6929650/1‑125 (MQ=255)

                                                                                                    aCGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTG‑‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAAATTAAGATTTGGAT‑CAACCAAAAATATATCAAAAAAATTATAAAAAATATATTAGTTCAGTATCAAATATga                                >  2:7253849/1‑127 (MQ=255)

                                                                                                       cTTTCAAAGTG‑TATTTTTTAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑TAAAGTAAGTTTTGGAT‑CAACAAAAAATATATAAAAAAAAATAAAAAAAAAAATTTTGTTGAGTTTCAAAACTGctt                              >  1:3372332/1‑126 (MQ=255)

                                                                                                          tCAAAGTG‑TATTTTTTAGG‑C‑TTG‑‑T‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AT‑AAAATTAATATTTTTAA‑AAACCAAAAATATAAAAAAAAAATTAAAAAAAATAATTTATTTAATTTTAAAAtaatcaaataa                          >  2:1758809/1‑118 (MQ=255)

                                                                                                              aGTG‑TATTTTTTAGG‑C‑TTGTTT‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AT‑AAAATTAATATTTTGAT‑AAAACAAAAAAATATAAAAAAAATTAAAAAAAAAATTTTATTTTAATTTAAAAtaataaaatataa                        >  2:4784414/1‑116 (MQ=255)

                                                                                                                 g‑tATTTTTTAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AA‑AAAAGTAAAATTTTGAT‑CCACCAAAACTATTTCAAAAAAATTAAAAAAAAAATGTTATTTGAGTTTCAAATGTGCaaataatgtaaa                    >  2:3148034/1‑121 (MQ=255)

                                                                                                                   tATTTTTTAGG‑C‑TTG‑‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAAATTAATATTTGGAT‑CAACAAAAAATATATAAAAAAAATTAAAAAAAATATTTTTTTTGATTTTAAAAAATGAATATATATTAaaaa                  >  2:4663582/1‑128 (MQ=255)

                                                                                                                      tttttAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAAATTAATATTTTGAA‑AAAAAAAAACTATTTAAAAAAAATTAAAAAAAATTATTAAGTTTATTTTAAAATATGAATATATAGTaaaatag                >  2:5663643/1‑125 (MQ=255)

                                                                                                                       ttttAGG‑C‑TTGTTT‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AT‑AAAATTAAGATTTTGTT‑AAACCAAAAATATAAAAAAAAAATTAAAAAAAAAATTTTTTTTGTGTTTAAAATTAGCAtatttatttaaatgg                >  1:1887180/1‑119 (MQ=255)

                                                                                                                         ttAGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AT‑AAAAGTAAGATTTGGAT‑AAACCAAAAATATATAAAAAAAATTAAAAAAAATAGTTTTGTTGAGTTTCAAATATGCATATAAATTACAAAGG‑AAt            >  2:6491035/1‑128 (MQ=255)

                                                                                                                           ttttttttG‑‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AAtt           <  1:6671661/122‑1 (MQ=255)

                                                                                                                           aGG‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AT‑AAAAGTAAGATTTGGTT‑CAACCAAAAATTTTTAAAAAAAATTAAAAAAAAAATTTTTTTTTATTTTAAAATATGAATTATTAGTAAAATTG‑AAttt          >  2:1647449/1‑128 (MQ=255)

                                                                                                                            gg‑C‑TTGT‑T‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AA‑AAAAGTAAAATTTGTAT‑AAACCAAAAATATATAAAAAAAATTAAAAAAAATATTTTATTTTAGTTAAAAAAATGCATATAAAATAAAAATA‑AATTTa         >  1:2805590/1‑128 (MQ=255)

                                                                                                                            gg‑C‑TTG‑‑T‑T‑TTTTTTTTTTT‑TTT‑TTAAAA‑AT‑AAAAGTAATATTTGGAT‑CAACCAAAAATTTATCAAAAAAATTAAAAAAAATATTTTATTTTATTTTAAAAAATGCAAATTAATTACAAAGG‑AATTTAt        >  2:5998933/1‑128 (MQ=255)

                                                                                                                              ttgggtttt‑t‑ttttttttttt‑ttt‑GTAAAA‑AT‑ATAAGTAATATTTGTAT‑CAACAAAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AAttt          <  2:3911693/120‑1 (MQ=255)

                                                                                                                              agtgttgtt‑t‑ttttttttttt‑ttt‑GTAAAA‑AT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AAttt          <  1:6736401/120‑1 (MQ=255)

                                                                                                                               tttttttt‑t‑ttttttttttt‑ttt‑GTAAAA‑AT‑AAAAGTAAGTTTTGGAT‑AAAACAAAACTATATAAAAAAAATTAAAAAAAATATTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTa         <  2:285297/121‑1 (MQ=255)

                                                                                                                               tttttttt‑t‑ttttttttttt‑ttt‑GTAAAA‑AT‑AAAAGTAAGATTTGGAT‑CATCCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTa         <  2:2182327/121‑1 (MQ=255)

                                                                                                                                 ttG‑‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAAAGTAAGATTTGTAT‑CAACCAAAACTATATAAAAAAAATTAAAAAAAATTTTTTAGTTGTGTTTAAAAAATGAATATTAATTAAAAATG‑AATTtattat     >  2:4168621/1‑128 (MQ=255)

                                                                                                                                   tttt‑t‑ttttttttttt‑ttt‑ttATAA‑TT‑AAAATTAATATTTTTAT‑TAAATAAAAATATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTTAAATATGCATATATAGTACAAAGG‑AATTTATGAt     <  1:1021409/125‑1 (MQ=255)

                                                                                                                                      t‑t‑ttttttttttt‑ttt‑ttAAAA‑AT‑AAAAGTAAGATTTGGAT‑CACCCAAAACTTTATAAAAAAAATTAAAAAAAATATTTTATTTTTGTTTAAAATCTGCATAAATAGTAAAAAGGAAATTTAtattta   >  2:5068686/1‑123 (MQ=255)

TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTA‑TTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTAGG‑C‑TTG‑‑T‑T‑TTTTTTTTTTT‑TTT‑GTAAAA‑AT‑AAAAGTAAGATTTGGAT‑CAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGG‑AATTTATGATAGA  >  CP016816/203768‑204023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.