Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F9 I0 R1
|
113 |
83.2 |
1840812 |
91.6% |
1686183 |
224.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,977,719 |
T→G |
16.9% |
K42N (AAA→AAC) |
flhC ← |
flagellar class II regulon transcriptional activator, with FlhD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,977,719 | 0 | T | G | 16.9%
| 110.7
/ 2.9
| 58 | K42N (AAA→AAC) | flhC | flagellar class II regulon transcriptional activator, with FlhD |
| Reads supporting (aligned to +/- strand): ref base T (21/25); new base G (8/2); total (31/27) |
| Fisher's exact test for biased strand distribution p-value = 7.98e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 |
GGTTAATGCCAGCAGTGGTCCTTCTTCTGCTTGTGGGCACTGTTCAAGGTATAAACGGTAGGCTTTGATCACCGCATCGACGCCATTACACAAACCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCAGGGTGATCA‑ATTCCATTGCCAGCTGAATATCCCGCGCT‑TCCTGAACAATGCTTTTTTCACTCATGATCAGGCCCTTTTCTTGCGCAGCGCTTCTTCAGGCTGATTAACATCATTCAGCAAGCGTGTTGAGAGCATGATGCCGGTATGAATTTGCTGGAGATCGTCAACGC > NC_000913/1977491‑1977950
|
ggTTAATGCCAGCAGTGGTCCTTCTTCTGCTTGTGGGCACTGTTCAAGGTATAAACGGTAGGCTTTGATCACCGCATCGACGCCATTACACAAACCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCGAAGCATGAACTTTTTTTTCCCAGGGCCAAAACCAGTCGGTTGAGAATGCCAGCCTTCCTTTCGGCGGGGGGGGT‑CCGCCCCGT‑TTGTTATAAAAATTTGTCAAGc > 2:57905/1‑239 (MQ=255)
tttctccacgatttgTCCTTCTTCTGCTTTTGGGAACTTTTCAAGGGATAACCGGTAGGCTTTGACCACCGCATCGACGCCATTCCACAAACCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTAGCAGGCGTc < 2:472606/225‑1 (MQ=255)
cgccgggggccTTTTTCTGCTTTTGGGCCCTTTTCAAGGTATAAACGGTAGGCTTTGATCACCGCATGGACGCCATTACAAAAACCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCCGCGAC‑t < 2:498626/230‑1 (MQ=255)
gcagTGGTCCTTCTTCTGCTTGTGGGCACTGTTCAAGGTATAAACGGTAGGCTTTGATCACCGCATCGACGCCATTACACAAACCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCCGT‑TCTTTTTAAAGTTTTTTCAGGCGTCCCCGCC‑tt > 1:606088/1‑239 (MQ=255)
gcagTGGTCACGCTTCTGCTTGTGGGCACTGTTCAAGGTATAAACGGTAGGCTTTGATCACCGCATCGACGCCATTACACAAACCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGCCATAAACCAGTCGGTTGAGAATGGACGCATGACTTTCGGCGGGGGGGTTCCCGCCCATT‑CTTTTATAAATtttttacagatcgcccgactt > 2:21900/1‑222 (MQ=255)
ctgtgtcctttcttttcTTTTGGGCACTGTTCAAGGTATAAACGGGAGGCTTTGATCACCGGATCGACGCCATTACACAAACCGGTTTTCAGTAAAACCTGCCATGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTG‑CCGCGCAGT‑TCGTTATAAAGTTTTATCAGGGGTCCGCGAC‑TTaa < 2:113340/223‑1 (MQ=255)
gTCCTTCTTCTGCTTGTGGGCACTGTTCAAGGTATAAACGGTAGGCTTTGATCACCGCATCGACGCCATTACACAAACCGGATTTCAGTAAAAACTGCCATGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCAGTCCTTTCGGCGGTGGGATT‑CCGCGCAGT‑TCCTTATAAAATTTTATAAGGGGTCAGCGGC‑TTAACtg‑t > 2:811892/1‑239 (MQ=255)
tttctGTTTGTTGGCCCTTTTCAAGGTTTAAACGGTAGGCTTTGATCCCCGCATCGACGCCATTACACAAACCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCg < 2:324617/238‑1 (MQ=255)
cttctGCTTGTGGGCACTGTTCAAGGTATAAACGGTAGGCTTTGATCACCGCATCGACGCCATTACACAAACCGGATTTCAGTAAAAACTGCCATGCATTACAGAACATCGAAGAATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGACTGCACACTTGCCTTTCGGCGGTGGGGCT‑GCGCGCAGTGTGTTAATAAGGTTTT‑TCACGGGGCCGGGAC‑TAAACTGATGtttg > 2:435020/1‑238 (MQ=255)
ttCAAGGAATAAACGGTAGGCTTTGATCACCGCATCGACGCCATTACACAAACCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTTTAAAGTTTTATCAGGGGTTCGCGCC‑CTAACAG‑TGTTTTGCTTTTCATC‑ATCTTCAAAc > 1:841260/1‑239 (MQ=255)
tCAAGGTATAAACGGTAGGCTTTGATCCCCGCATCGACGCCATTACACAAACCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACg < 1:853790/239‑1 (MQ=255)
tCAAGGTATAAACGGTAGGCTTTGATCACCGCATCGACGCCATTACACAAACCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACg < 2:733239/239‑1 (MQ=255)
ataactggTAAGCTTTGATCCCCACATAGCCGCCTTTACACAAACCGGTTTTCAGTAAAAACTGCCAGGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGTGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAgcgc < 1:525813/231‑1 (MQ=255)
aaaCGGTAGGCTTTGATCACCGCATCGACGCCATTACACAAACCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCAg < 1:577995/239‑1 (MQ=255)
aaaCGGTAGGCTTTGATCACCGCATCGACGCCATTACACAAACCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCCCGCAGG‑TCTTTTTAAAAGTTTTTCAGGCGGCCGCGACTTTACCTG‑TGTTT‑GCTTTCCAAC‑acattgaaaaggggaccccg > 2:889756/1‑220 (MQ=255)
aaacgtgggCTTTTATCCCCGCATCGACGCCATTACCAAACCCGGTTTTCAGGAAAAACTGCAATGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCAgg < 2:600378/232‑1 (MQ=255)
gTAGGCTTTGATCACCGCATCGACGCCATTACACAAACCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGGTT‑CCCCGCCGT‑TCTTTTTAAAGCTTTTTCAGTGCTCCCCGGC‑TTAAATG‑CGTTTCGCTTTCCCAC‑ATTTTCAAACAAGCCCCCAgtggac > 2:577995/1‑234 (MQ=255)
tAGGCTTTGATCACCGCATCGACGCCATTACACAAACCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGGCT‑TCTCGCCCT‑TCTTTTTAAAGTTTTTTCAAGCGGCCCCGGC‑TTAACCC‑TGGTTCGCCTTTCAGC‑CTTTTCCAACGAACCCCCAAGGGGag > 2:1529/1‑238 (MQ=255)
aGGCTTTGATCACCGCATCGACGCCATTACACAAACCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCCGGCGTCCGCGAC‑TTCACTG‑TGTTTTGCTTTCCAGC‑ATCTGCAAACGGGCGCCCAGGGGGATc > 1:859882/1‑239 (MQ=255)
aGGCTTTGATCACCGCATCGACGCCATTACACAAACCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCCTTATAAAGGTTTATCAGGCGTCCGCGGC‑TTAACTG‑TGTTTCGCTTTCCAAC‑ATCTGCAAACCGACGCCCAGGGGGATc > 1:514273/1‑239 (MQ=255)
gCTTTGATCACCGCATCGACGCCATTACACAAACCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCCT‑CCGCGCAGT‑TCTTTATAAAATTTTATCAGCCGTCCGCGAC‑TTAACTG‑TGTTTGGCTTTCCAGC‑ATCTGCCAAGGAGAGCCCCggggggac > 1:698764/1‑232 (MQ=255)
cccggagcGAAGCCATTACACAAACCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCAGGGTGATCA‑ATTCCATTGc < 1:719286/232‑1 (MQ=255)
ccGCATCGACGCCATTACACAAACCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCCGGCGTCCGCGAC‑TTTACTG‑TGTTTCGCTTTCCTGC‑ATCTGCAAAATGACGCCCCGGGGGATCA‑ATTCCCTTGc > 1:280904/1‑238 (MQ=255)
cGCATCGACGCCATTACACAAACCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCCCCGAC‑TTAACTG‑TGTTTCGCTTTCCCGC‑CTCTTCAAACGAGGGCCCAGGGGGATCA‑ATTCCATTTcc > 1:420342/1‑238 (MQ=255)
cGCATCGACGCCATTACACAAACCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGCCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTAGACTT‑CCCTGCCGT‑TTCTTATAAAGGTTTACATGGCGGCCACGGC‑TTAACAG‑GGTTTTGCTTTCCACCAATTTCCAAACAAAGGCCCAggggataaaattcaattccc > 2:331831/1‑222 (MQ=255)
aCCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACAAGCGCCCCGGGTGATCA‑ATTCCATTGCCAGCTGAATATCCCCCGCT‑TCCt > 1:877074/1‑239 (MQ=255)
accctgccctgccTTTCAGAACATCGAAGCATTAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCAGGGTGATCA‑ATTCCATTGCCAGCTGAATATCCCGCGCT‑TCCTGAACAATGCtttttt < 2:420342/236‑1 (MQ=255)
aCTGCCCTGCATTACCGAACATCGAAACATTAACGTTTTGTTCCCAGGTCACAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCAGGGTGATCA‑ATTCCATTGCCAGCTGAATATCCCGCGCT‑TCCTGAACAATGCTTTTTTCa < 1:811892/239‑1 (MQ=255)
gaTGCTTTTCAGAACATTGAAGCATGAACTTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCAGGGTGATCA‑ATTCCATTGCCAGCTGAATATCCCGCGCT‑TCCTGAACAATGCTTTTTTCACTCa < 2:514273/237‑1 (MQ=255)
tACAGAACATCGAAGCATGGACCTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCAGGGTGATCA‑ATTCCATTGCCAGCTGAATATCCCGCGCT‑TCCTGAACAATGCTTTTTTCACTCATGATCAgg < 1:889756/239‑1 (MQ=255)
tACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCcg < 2:506819/122‑1 (MQ=255)
tACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGGTTTAACAGGCGTCcg > 1:506819/1‑122 (MQ=255)
cgAACATTCAAGCATTGACGTTTTGTTCCCAGGTCATAAACCCGGCGGTTGAAATAGGCAGCTTGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCAGGGTGATCA‑ATTCCATTGCCAGCTGAATATCCCGCGCT‑TCCTGAACAATGCTTTTTTCACTCATGATCAGGccc < 2:859882/238‑1 (MQ=255)
cATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTTGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCAGGGGGATCA‑ATTCCATTGCCCGCTGAATATCCCCCCCT‑TCCTGGACAATGCTTTTTTCACTCATGACAAGGCCCtttt > 1:441411/1‑239 (MQ=255)
cATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCCGGGGGATCA‑ATTCCATTGCCAGCTGAATATCCCGCGCT‑TCCTGAACAATGCTTTTTTTAATCATGATCAGGCCCtttt > 1:576068/1‑239 (MQ=255)
cGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCCCGCAGT‑TCTTTATAAAGTTTTATCTGGCGGCCGCGGC‑TTTCCTG‑GGTTTCCCTTTTCCGC‑ATATTCAACAGCGAGACCCGGGTGTCCC‑ATTCCATTTCCAGCGGCAAATCCCGCCCT‑TCCTGAACAATCCTTTTTTATCTCCTGTTAAGACCCCtttttt > 2:913504/1‑239 (MQ=255)
cGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGATT‑CCGCGCAAT‑TCTTTATAAAGTTTTATTCGGGGTCCGCGGC‑CTAACTG‑TGGTTCTGTTTCCAAG‑ACCTGCAAACCAGCGCCCAGGGGGGTCA‑ATTCCACTTCCCGCTGAAAATCCCCCCCT‑TCCCGGACCAAACTTTTTTCAATCATTATCCGGGCCtttttt > 2:510693/1‑236 (MQ=255)
cGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGGGGGCTT‑CCGCGCCGG‑TCTTTATAAAGGTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGGTTTCCTTTCCACC‑ATCTGCAAACGAGCGCCCAGGGGGATCA‑ATTCCATTGCCAACTGAATATCCCCCGCG‑TCCTGCAAAATGCTTTTTTTACTCACTACAAGGCCCTtttttt > 2:714784/1‑239 (MQ=255)
cGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGCCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCCCCCACT‑TCTTTTTAAAGTTTTATTCGGTGTCCTCGAC‑CTAACTG‑TGTTTCGCTTTCTACC‑ATTTTCAAACCACGCCCCCGGGTCATCC‑ATTTCCTTTCCCGCCTACTATCCCCCCCTGTCCCG‑ACAATGCTTTTTTCCATCCTTACCAAGCCCCTTTCtt > 2:718272/1‑239 (MQ=255)
aTGAACTTTTGGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGGTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCAGGGTGATCA‑ATTCCATTGCCAGCTGAATATCCCGCGCT‑TCCTGAACAATGCTTTTTTCACTCATGATCAGGCCCTTTTCTTgcgc < 1:510693/237‑1 (MQ=255)
ttCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCAGGGTGATCA‑ATTCCATTGCCAGCTGAATATCCCGCGCT‑TCCTGAACAATGCTTTTTTCACTCATGATCAGGCCCTTTTCTTGCGCAGCGCTTCTTCAgg < 1:714784/239‑1 (MQ=255)
ggTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCAGGGGGATCA‑ATTCCATTGCCAGCTGAATTACCCGCGCT‑TCCCGAACAATCGTTTTTTCATTCATGATCAGGCCCTTTTCTTGCGCAGCGCTTCTTCAGGCTGAtt > 1:360529/1‑239 (MQ=255)
aTAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCAGGGTGATCA‑ATTCCATTGCCAGCTGAATATCCCGCGCT‑TCCTGAACAATGCTTTTTTCa < 2:466045/189‑1 (MQ=255)
aTAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCAGGGTGATCA‑ATTCCATTGCCAGCTGAATATCCCGCGCT‑TCCTGAACAATGCCTTTTTCa > 1:466045/1‑189 (MQ=255)
gTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCCTGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTTCAAACGAGCGCCCAGGGTGATCA‑ATTCCATTTCCAGCTGAATATCCCGCGCT‑TCCTTAACCATGCTTTTTTCACTCCTGATCAGGCCCTTTTCTTGTGCCGCGCTTCTTTAGGCTGGTTAACATCATTCAg > 2:734875/1‑239 (MQ=255)
gTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGGTTTATCAGGCGTCCGCGAC‑TTAACTG‑GGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCAGGGTGATCA‑ATTCCATTGCCAGCTGAATATCCCGCGCT‑TCCTGAACAATGCTTTTTTCACTCATGATCAGGCCCTTTTCTTGCGCCGCGCTTCTTCAGGCTGGTTAACATCATTCAg > 1:259510/1‑239 (MQ=255)
tGAGAATGGCAGCATGCCTTTCGGCGGTGGGCAT‑CTCCGCAGT‑TCTTTATAAAGGTTTATTAGGCGTCCGGGGC‑CTAACTG‑GGGTTCGCTTTCCAGG‑CTCTGCAAACGAGGGCCCAGGGTGAGCACATTCC‑TTGACAGCTGACTTTCCCCCGAT‑TCCCAACCAATTCTTTTTTCAACCATGTTACAGCCCTTTTCTTGGACAGGCCTTCTTTAGGATGATTAAAATCATTCacgaaacc > 2:843323/1‑232 (MQ=255)
atgcccgcagtccTTTCGGCGGTGGGCTG‑TCGCGCAGG‑TCTTTATAAAGTTTTATCAGGCCTCCGCGCC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCGGCAAACGACCGTCCAGGCTGATCA‑ATTCCATTGCCAGCTGAATAACCCGCTCT‑TCCTGAACAATGCTTTTTTCACTCATGATCAGGCCCTTTTCTTTCGCAGCGCTTCTTCAGGCTGATTAACATCATTCAGCAAGCGTGtt < 1:649088/227‑1 (MQ=255)
cagcaTGCCTTTCGGCGGTGGGCTT‑CCGCGCCGT‑TCTTTTTAAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCAGGGTGATCA‑ATTCCATTGCCAGCTGCATATCCCGCGCC‑TCCTGAACAATGCTTTTTTCACTCATTATCAGGCCCTTTTTTTGCGCAGCGCCTCTTCATGTTGATTCACATAATTCAGCAAGCGTGTTgaga > 2:301467/1‑238 (MQ=255)
cagcaTGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTTTAAAGGTTTATCAGGCGTCCGCGAC‑TTTACTG‑TGTTTCGCTTTCCAGC‑ATCTGCCAACGAGCGCCCAGGGGGATCA‑ATTCCATTGCCAGCTGAATATCCCGCGCT‑TCCTTGACAATGCTTTTTTTCCTCCTGTTCCAGCCCTTTTCTTTCGCACCCCTTTTTCAGGCTGTTTAACCACATTCCGCaacatggtttaggg > 2:210186/1‑227 (MQ=255)
ttttgcgcggTGTGCTT‑CCGCGCCGT‑TCTTTATAAAGTTTTATCAGGCGTCCGCTAC‑TTAACTG‑TGTTTCGCTTTACAGC‑ATCTGCAAACGAGCTCCCAGGGTGATCA‑ATTCCATTGCCAGCTGAATATCCCGCGCT‑TCCTTAACAATGCTTTTTTCACTCATGATCAGGCCCTTTTCTTGCGCAGCGCTTCTTCAGGCTGATTAACATCATTCAGCAAGCGTGTTGAGAGCatgatg < 1:205054/232‑1 (MQ=255)
cTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCAGGGTGATCA‑ATTCCATTGCCAGCTGAATATCCCGCGCT‑TCCTGAACAATGCTTTTTTCACTCATGATCAGGCCCTTTTCTTGCGCAgcg < 1:235313/188‑1 (MQ=255)
tttCGGCGGTTGGCTT‑CCGCGCAGT‑TCTTTATAAAGGTTTATCAGGCGGCCGCTGC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGGCCAGGGTGATCA‑ACTCCATTGCCAGCTGAATATCCCGCGCT‑TCCTGAACAATGCTTTTTTCACTCATGATCAGGCCCTTTTCTTGCGCAGCGCTTCTTCAGGCTGATTAACATCATTCAGCAAGCGTGTTGAGAGCATGATGc < 1:818555/238‑1 (MQ=255)
gTGGGCTT‑CCGCGCATT‑TCTTTATAAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCAGGGTGATCA‑ATTCCATTGCCAGCTGAATATCCCGCGCT‑TCCTGAACAATGCTTTTTTCACTCATGATCAGGCCCTTTTCTTGCGCAGCGCTTCTTCAGGCTGATTAACATCATTCAGCAAGCGTGTTGAGAGCATGATGCCGGTATGaa < 2:606088/239‑1 (MQ=255)
gggCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCAGGGTGATCA‑ATTCCATTGCCAGCTGAATATCCCGCGCT‑TCCTGAACAATGCTTTTTTCACTCATGATCAGGCCCTTTTCTTGCGCAGCGCTTCTTCAGGCTGATTAACATCATTCAGCAAGCGTGTTGAGAGCATGATGCCGGTATGAAt < 1:1529/238‑1 (MQ=255)
cTT‑CCCCTCTGT‑TCTTTATAAATTTTTTTCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCAGGGTGATCA‑ATTCCATTGCCAGCTGAATATCCCGCGCT‑TCCTGAACAATGCTTTTTTCACTCATGATCAGGCCCTTTTCTTGCGCAGCGCTTCTTCAGGCTGATTAACATCATTCAGCAAGCGTGTTGAGAGCATGATGCCGGTATGAATTTGc < 2:841260/239‑1 (MQ=255)
tt‑CCGCGCGTT‑TTTTTATAAATTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCAGGGTGATCA‑ATTCCATTGCCAGCTGAATATCCCGCGCT‑TCCTGAACAATGCTTTTTTCACTCATGATCAGGCCCTTTTCTTGCGCAGCGCTTCTTCAGGCTGATTAACATCATTCAGCAAGCGTGTTGAGAGCATGATGCCGGTATGAATTTGc < 2:576068/238‑1 (MQ=255)
tataACGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCAGGGTGATCA‑ATTCCATTGCCAGCTGACTATCCCGCCCT‑TCCTGAACCATGCTTTTTTCACTCCTGATCAGGCCCTTTTCTTGCGCAGGGCTTCCTCAGGCTTATTCACATTCTTCAGCAAGCGAGTTGAGCGCATGCTCACGGTACGAATTAGCTGGTAGTCGCCAAcgg > 2:701535/1‑238 (MQ=255)
tataAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCAGGGTGATCA‑ATTCCATTGCCAGCTGAATATCCCGCGCT‑TCCTGAACAATGCTTTTTTCACTCATGATCAGGCCCTTTTCTTGCGCAGCGCTTCTTCAGGCTGATTAAACTCATTCACCAAGCGGGTTGAGAGACTGATGCGGGTAGGAATTTGCTGGATAAGGTAAAcgc > 2:95404/1‑239 (MQ=255)
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GGTTAATGCCAGCAGTGGTCCTTCTTCTGCTTGTGGGCACTGTTCAAGGTATAAACGGTAGGCTTTGATCACCGCATCGACGCCATTACACAAACCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCGAAGCATGAACGTTTTGTTCCCAGGTCATAAACCAGTCGGTTGAGAATGGCAGCATGCCTTTCGGCGGTGGGCTT‑CCGCGCAGT‑TCTTTATAAAGTTTTATCAGGCGTCCGCGAC‑TTAACTG‑TGTTTCGCTTTCCAGC‑ATCTGCAAACGAGCGCCCAGGGTGATCA‑ATTCCATTGCCAGCTGAATATCCCGCGCT‑TCCTGAACAATGCTTTTTTCACTCATGATCAGGCCCTTTTCTTGCGCAGCGCTTCTTCAGGCTGATTAACATCATTCAGCAAGCGTGTTGAGAGCATGATGCCGGTATGAATTTGCTGGAGATCGTCAACGC > NC_000913/1977491‑1977950
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
