Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F9 I0 R1
|
113 |
83.2 |
1840812 |
91.6% |
1686183 |
224.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,260,627 |
T→C |
20.9% |
E261G (GAG→GGG) |
fruA ← |
fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,260,627 | 0 | T | C | 20.9%
| 106.4
/ 2.6
| 54 | E261G (GAG→GGG) | fruA | fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| Reads supporting (aligned to +/- strand): ref base T (18/21); new base C (10/3); total (29/25) |
| Fisher's exact test for biased strand distribution p-value = 6.41e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CAGTTTCAATTGCGTACTGATTAACTTCGCAATG‑TAACCAGCCAGGAAGCCCGCAATAATACCACC‑AATGAAGCCAGAA‑CCGGTGCTGACCGCCAGCATACCGCCAATCAGACCCGGAGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGTATGCGCCTGCACTCTCTTTCTTACTTTCAGTGGTCGCC‑GTTTGAGCTTTGCCCGCCGGTTCATACGGCGTTGCTTCAGCAACCGCTTTATCCAGTTCCTGCGCGGTTTTCTTCAGCGCCAGACCGGT > NC_000913/2260392‑2260856
|
cAGTTTCAATTGCGTACTGATTAACTTCGCAATG‑TAACCAGCCAGGAAGCCCGCAATAATACCACC‑AATGAAGCCAGAA‑CCGGTGCTGACCGCCAGCATACCGCCAATCAGACCCGGAGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGACCCC‑GGCCCtt > 1:403212/1‑239 (MQ=255)
tttCAATTGCGTACTGATTAACTTCGCAATG‑TAACCAGCCAGGAAGCCCGCAATAATACCACC‑AATGAAGCCAGAA‑CCGGTGCTGACCGCCAGCATACCGCCAATCAGACCCGGAGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTCCCGGCACCA‑TCACCGCCAAGGCTGAACCACCACCAACCCGCCTCAGCGCCCCAACCCACGAACCC‑GGCACTTaaa > 2:475433/1‑239 (MQ=255)
tttCAATTGCGTACTGATTAACTTCGCAATG‑TAACCAGCCAGGAAGCCCGCAATAATACCACC‑AATGAAGCCAGAA‑CCGGTGCTGACCGCCAGCATACCGCCAATCAGACCCGGAGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCAACAGCGCCGCAGCCAACGTACCC‑GGCCCTTTaa > 1:518030/1‑239 (MQ=255)
tttCAATTGCGTACTGATTAACTTCGCAATG‑TAACCAGCCAGGAAGCCCGCAATAATACCACC‑AATGAAGCCAGAA‑CCGGTGCTGACCGCCAGCATACCGCCAATCAGAACCGGAGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAAACTGCATCAGCCCCGCAGCCAACGTAACC‑GGCCCTTTaa > 1:571848/1‑239 (MQ=255)
tCAATTGCGTACTGATTAACTTCGCAATG‑TAACCAGCCAGGAAGCCCGCAATAATACCACC‑AATGAAGCCAGAA‑CCGGTGCTGACCGCCAGCATACCGCCAATCAGACCCGGAGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCCGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCCGCCAACGTACCC‑GGCCCTTTaaa > 1:392746/1‑238 (MQ=255)
tCAATTGCGTACTGATTAACTTCGCAATG‑TAACCAGCCAGGAAGCCCGCAATAATACCACC‑AATGAAGCCAGAA‑CCGGTGCTGACCGCCAGCATACCGCCAATCAGACCCGGAGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCCCCA‑TCAGAGCAAAGGCTGAACCACCACCAAACCGCACCAGCGCCGCAACCAACGAACCCTGGCCCTTaaaa > 2:378891/1‑239 (MQ=255)
gATTAACTTCG‑AATGTTAACCAGCCAGGAACCCCGAAATAATCCCACC‑AATGAAGCCAAAC‑CCGGTGCTGCCCGCCAGCATCCCGCCAATCAGACCCGGAGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACcaa < 1:254525/239‑1 (MQ=255)
aTTAACTTCGCAATG‑TAACCAGCCAGGAAGCCCGCAATAATACCACC‑AATGAAGCCAGAA‑CCGGTGCTGACCGCCAGCATACCGCCAATCAGACCCGGAGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCCGCGCCGCGGCCAACGTACAC‑AGCCCTTTAAACACTTCGATACcaaa > 1:645469/1‑239 (MQ=255)
cctccacaattgacccagcca‑gAAACCCCCAATATACCCCCC‑AAAGAAGCCAAAACCCGGTCCTGCCCGCCAGCATGCCGCCAATCAGACCCGGAGTGAGG‑CCCGGCCGA‑GCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACcaaaagca < 2:403212/225‑1 (MQ=255)
cAATG‑TAACCAGCCAGGAAGCCCGCAATAATACCACC‑AATGAAGCCAGAA‑CCGGTGCTGACCGCCAGCATACCGCCAATCAGACCCGGAGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACAACCACCAATCTGCATCAGCGCCGCAGCCACCGTACCC‑GGCCCTTTAAACCCTTCGATACCAAAAACAaaagaa > 1:771460/1‑239 (MQ=255)
cAATG‑TAACCAGCCAGGAAGCCCGCAATAATACCACC‑AATGAAGCCAGAA‑CCGGTGCTGACCGCCAGCATACCGCCAATCAGACCCGGAGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGAACCGGCACCA‑TCAGCCCACAGACTGAACCACCCCCAACCTGCACCAGCGCCCCACCCACCGAACCC‑GGCCCTTTAAACGccttcccttatacacatctgacc > 2:508746/1‑217 (MQ=255)
acccagccagAAACCCCGAAATAAT‑CCACCAAAAGAAGCCGAAA‑CCGGTGCGGACCGCCAGCATGCCGCCAATCAGACCCGGAGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGcgcg < 1:659487/237‑1 (MQ=255)
cagGAAGCCCGCAATAATACCACC‑AATGAAGCCAGAA‑CCGGTGCTGACCGCCAGCATACCGCCAATCAGACCCGGAGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCGGCCAACGTACCC‑GGCCCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGGGCGATAcaca > 1:112861/1‑239 (MQ=255)
ggAAGCCCGCAATAATACCACC‑AATGAAGCCAGAA‑CCGGTGCTGACCGCCAGCATACCGCCAATCAGACCCGGAGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAACCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGCTACCAAAAGCAAAACAAAGCCCGAAAaacaa > 2:263829/1‑237 (MQ=255)
cccGCAATAATACCACC‑AATGAAGCCAGAA‑CCGGTGCTGACCGCCAGCATACCGCCAATCAGACCCGGAGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCCTCAGCGCCGCAGCCACCGAACCC‑GGCCCTTTAAACACTTCGATACCAAAACCAAAAGAAAACCCGaaaaaaaaacaacc > 2:284756/1‑226 (MQ=255)
cGCAATAATACCACC‑AATGAAGCCAGAA‑CCGGTGCTGACCGCCAGCATACCGCCAATCAGACCCGGAGTGAGG‑CCCGGACGA‑TCGGCAATGGGAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCCATACCAAAAGCAAAGGAAAGCGCGATACACAGACCACCt > 1:489868/1‑238 (MQ=255)
tcccccc‑aATGAACCCAGTA‑CCGGTGCTGACCGCCAGCATACCGCCAATCAGACCCGGAGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGAcc < 1:697019/234‑1 (MQ=255)
cc‑aATGAAGCCAGAA‑CCGGTGCTGACCGCCAGCATACCGCCAATCAGACCCGGAGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAAAAAACGCGAACAACAAACCACCGGCAAAGACCACCgg > 2:746006/1‑239 (MQ=255)
aggaccccAGAA‑CCGGTGCGCACCCCCAGAATACCGCCAAGCAGCCCCGGAGTGGGG‑CCCGGACGA‑CCGGAAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCCCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGgcag < 2:370129/233‑1 (MQ=255)
tGAAGCCAGAA‑CCGGTGCTGACCGCCAGCATACCGCCAATCAGACCCGGAGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGgcagc > 1:370129/1‑239 (MQ=255)
aGAA‑CCGGTGCTGACCGCCAGCATACCGCCAATCAGACCCGGAGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAACAGAAAGCGCGATACCACGCACACCTGCACAGACCATCGGCAGCACGTAAg > 1:59937/1‑239 (MQ=255)
cggggggaacccGCCAACATGCCACCAACCAGCCCCGGAGGGGGG‑CCCGGACGA‑TGGGCAAGGGAAAAGGCAATATAC‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGaaa < 2:42671/228‑1 (MQ=255)
gTGCTGACCGCCAGCATACCGCCAATCAGACCCGGAGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAACGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGTTACCAAAAGCAAAAGAAATCGCGATACCAAAACACCCTGCAACGACCATCGGCAGCATGTAAGAAACGc > 1:374084/1‑238 (MQ=255)
ccccccaagttactcccataaaGACCCGGGGTGGGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAC‑CCTGCCAGTACCGGCCCCA‑GCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAg < 2:352252/218‑1 (MQ=255)
ccgccgggtacccccaaaacacgcccGGATTGAGG‑CCCGGACGA‑GCGGAAATGGAAAAGGCAATAAAA‑CCTGCCAGTACCGGCTCCA‑TCAGCGCAAATGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTGTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAg < 2:489868/215‑1 (MQ=255)
gattACCGCCATTCAGTCCCGGTGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGACAATTTAC‑CCTGCCAGTACCGGCACCG‑TCAGCGCAAAGGCTGACCCTCCACCAATCTGCACCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGa < 2:112861/236‑1 (MQ=255)
cccaccccccAATCAGACCCGGGTTGAGG‑CCCGGACGA‑TCGGCAAGGGAAAAGGCAAGATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGa < 2:426340/231‑1 (MQ=255)
aTACCGCCAATCAGACCCGGATTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGAc < 1:402090/238‑1 (MQ=255)
cccccAACCAGACCCGG‑GTGGGGCCCCGGACGACTCGG‑ATGGGAAAAGGCAATATAG‑CCTGCCAGTACCGGCCCCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGTa < 2:374084/236‑1 (MQ=255)
ccGCCAACCAGGCCCGGAGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGTa < 1:387094/239‑1 (MQ=255)
ccAATCAGACCCGGAGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGTATg > 1:651044/1‑238 (MQ=255)
aaacAGGCCCGGAGTTAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGTATgcgc < 1:197266/236‑1 (MQ=255)
cccGGTGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATAAAA‑CCTGCCAGTACCGGCACCA‑GCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCGCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGTATGCGCCTGCa < 1:710087/237‑1 (MQ=255)
cccGGAGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGTATGCGCCTGCAct < 1:475433/239‑1 (MQ=255)
ccaggggTGAGG‑CCCGGCCGA‑ACGGAAGGAGAAAAGGAAATAAGA‑CCTGCCAGTTCCGGCACCA‑TCAGAGCAAAGGCCAAACCCCCACCAAGCTGCAACAGCGCCTCAGCCAACCTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGTATGCGCCTGc < 2:630539/230‑1 (MQ=255)
cggggggAGG‑CCCGGGAGA‑ACGGGAATGGAAAAAGGAAAATAACCCGGCCAGT‑CCGGTCCCA‑ATAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGTATGCGCCTGCAct < 1:528602/231‑1 (MQ=255)
ggACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGTATGCGCCTGCACTCTCTTTCTTACTTTc > 1:706492/1‑239 (MQ=255)
ggACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGC‑AAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGCAAGCGCCTGCCCTCTCTTTCTTACtttac > 1:699113/1‑237 (MQ=255)
tCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGCCGGTATGCGCCTGCACTCCCTTTCTTACTTTCAGTgg > 1:245827/1‑238 (MQ=255)
cGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGTATGCGCCTGCACTCTCTTTCTTACTTTCAGTGGTc < 1:104809/239‑1 (MQ=255)
cGGCAATGGAAAAGAAAAAAAAA‑CCTGCCAGTACCGGCACCA‑TCACCGAAAAGTCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGTATGCGCTTGCACTCTCTTTCTTACTTTCAGTGGTc < 2:874074/239‑1 (MQ=255)
aaaGGCAATACAA‑CCTGCCCGTACCGGCCCCACTCGGCCCAAGGCCTAAACC‑CCCCCAAACTGCATCAGCGCCGCACCCAACGTACCC‑GGCCCTTTAAACGCTACGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCCCCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGTATGCGCCTGCACTCTCTTTCTTACTTTCAGTGGTCGCC‑GTTTGAg < 2:245827/239‑1 (MQ=255)
ataC‑CCTGCCAGTACCGGCACCA‑TCAGCCAAAAGGCTGACCCACCCCCAATCGGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATCCCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGTATGCGCCTGCACTCTCTTTCTTACTTTCAGTGGTCGCC‑GTTTGAGCTTTGCccg < 1:284756/239‑1 (MQ=255)
gCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGTATGCGCCTGCACTCTCTTTCTTACTTTCAGTGGTCGCC‑GTTTGAGCTTTGCCCCCCGGTTc > 1:716332/1‑239 (MQ=255)
gCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGTATGCGCCTGCACTCTCTTTCTTACTTTCAGTGGTCGCC‑GCTTAAGCTTTGCCCGCCGGTTc > 1:604555/1‑239 (MQ=255)
gCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGTATGCGCCTGCACTCTCTTTCTTACTTTCAGTGG‑CGCCAGTTTGAGCTTTGCCCGCCGGTTc > 1:910352/1‑239 (MQ=255)
cAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGTATGCGCCTGCACTCTCTTTCTTACTTTCAGGGGTCGCC‑GTTTGAGATTTGCCCGCCGGTTCAt > 1:823791/1‑239 (MQ=255)
aGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGTATGCGCCTGCACTCTCTTTCTTACTTTCAGTGGTCGCC‑GTTTGAGCTTTGCCCGCCGGTTCATACGGCGTTGCTTCAGCAACCGCt > 1:660212/1‑239 (MQ=255)
caccaATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGTATGCGCCTGCACTCTCTTTCTTACTTTCAGTGGTCGCC‑GTTTGAGCTTTGCCCGCCGGTTCATACGGCGTTGCTTCAGCAACCGCTTTATccctgtct > 1:649026/1‑233 (MQ=255)
cttCTGCATCAGCCCCGCAGCAAACGGCCCC‑GGCTTTTTAAACGCTTCGAAACCAAAAAAAAAAAAAACCCCGATACACAGACCCCCTGCACGGACCACGGGCAAAATGAAAGAACCGCCCGTCAGCAAGTGCCGGTAGGCGCCTGCCCTCTTTTTCTTCCTTTCAGTGGTCGCC‑GTTTGATCTTTGCCCGCCGGTTCATACGGCGTTGCTTCAGCAACCGCTTTATCCAGTTCCTgcg < 2:651044/237‑1 (MQ=255)
tGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGAATGCGCCTGCACTCTCTTTCTTACTTTCAGTGGTCGCC‑GTTTGAGCTTTGCCCGCCGGTTCATACGGCGTTGCTTCAGCAACCGCTTTATCCAGTTCCTGcccg > 1:346206/1‑237 (MQ=255)
cAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCaa < 2:571451/75‑1 (MQ=255)
cAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCaa > 1:571451/1‑75 (MQ=255)
gTACCC‑GGCCCTTTAAACGCTTCGATACCAAAAGAAAAAAAAAGCCGGATACACAGACCACCTGCACCGCCCATCGGCAGCATGTAAGAACCGCCCGTCAGCAAGTGACGGTATGCGCCTGCACTCTCTTTCTTACTTTCAGGGGTCGCC‑GTTTGAGCTTTGCCCGCCGGTTCATACGGCGTTGCTTCAGCAACCGCTTTATCCAGTTCCTGCGCGGTTTTCTTCAGCGCCAGACCGGt < 1:263829/239‑1 (MQ=255)
|
CAGTTTCAATTGCGTACTGATTAACTTCGCAATG‑TAACCAGCCAGGAAGCCCGCAATAATACCACC‑AATGAAGCCAGAA‑CCGGTGCTGACCGCCAGCATACCGCCAATCAGACCCGGAGTGAGG‑CCCGGACGA‑TCGGCAATGGAAAAGGCAATATAA‑CCTGCCAGTACCGGCACCA‑TCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCC‑GGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGTATGCGCCTGCACTCTCTTTCTTACTTTCAGTGGTCGCC‑GTTTGAGCTTTGCCCGCCGGTTCATACGGCGTTGCTTCAGCAACCGCTTTATCCAGTTCCTGCGCGGTTTTCTTCAGCGCCAGACCGGT > NC_000913/2260392‑2260856
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
