Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F17 I0 R1
|
66 |
109.4 |
2318666 |
93.6% |
2170271 |
226.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,708,814 |
A→G |
6.8% |
A632A (GCA→GCG) |
rsxC → |
SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,708,814 | 0 | A | G | 6.8%
| 192.0
/ 2.6
| 75 | A632A (GCA→GCG) | rsxC | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base A (33/31); new base G (2/4); total (39/36) |
| Fisher's exact test for biased strand distribution p-value = 6.73e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 |
ATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGA > NC_000913/1708576‑1709044
|
aTCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAACTGGAACAGCAACAGGCTAATGAGGAAACAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCACAAGCa > 1:500209/1‑239 (MQ=255)
ccgcatAAAACTGCGGTAGAAGCAGCTATCGCACGCGCCAAAGCGCGCAAGCTGGAACAGCCACAGGCTAATGCGGAACCAGAACAACAGGCCGATCCGCGCAAAGCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACg < 1:418798/234‑1 (MQ=255)
ccACGTATACCTGCCACGAAATCAGCTATCGCCCGCTCCAAAGCGAGCACGCTGGACCAGAACCTCAGTAATGCGGAACCAACACCAGAGGTCGATCCGCGTAAAGCCGCCGTCGAAGCCGCTATCGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACg < 2:661028/239‑1 (MQ=14)
ccACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCAc > 1:1139762/1‑238 (MQ=255)
ccACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCAc > 1:661028/1‑238 (MQ=255)
ccACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACg < 1:681044/239‑1 (MQ=255)
ccACGAAAGACTGCGGGTGAGGCAGCCAGCGACCGCGCCAACGGGGGGAAGCTGGAACAGCAACAGCCAAATGCGGACCCAGAACAACTGGCCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACg < 2:1145367/239‑1 (MQ=14)
cGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCaa > 1:389008/1‑239 (MQ=255)
cGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCACGTGCCAAAGCACGCAAGCTGGAACCGCAACCGCATACACCGGAAACGGAGCAAAAGATGGACTCGGGCAAAACCGCCGTGGAAGCCGCAACTGCAGATGACAAAACAAGCaa > 2:308384/1‑239 (MQ=14)
aaCTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTg‑g > 1:876486/1‑239 (MQ=255)
ccGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGCCTACTGCGGCACCAAAAGAACAGGCCGATCCGCCCAAAGCCGCCGTCGCAGCGGCCATTCCCCGGCCCAAACACCGCAAGCTG‑GAGCa > 2:1054818/1‑238 (MQ=14)
gtggAAGCAACTACCACCCGCCCACAAGAGCGCAAACTGGAACAGCGACAGGCTAATCCAGACGCAGAAGAACAGGTCGATCCGCGCACAGCCGCCGTTGAAGACGCTATCGCCGGCGCCAAAGCACGAAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAAAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGG‑GAACAGCa < 2:1123289/236‑1 (MQ=14)
tGAAGCAGCTCGCGCCCGCGCCAAAGCGGCCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCaa < 1:368835/238‑1 (MQ=255)
tGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAACAACAGGTCGATCCGCGCAAGACCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCaa < 1:121473/238‑1 (MQ=255)
ccGCGACAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGc < 1:296259/239‑1 (MQ=255)
cgcgCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCGGAGcc > 1:819908/1‑239 (MQ=255)
cgcCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAg > 1:993375/1‑239 (MQ=255)
cAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCCGCGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGG‑TCGATCCGCGCAAAg > 1:26167/1‑238 (MQ=255)
cAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACg > 1:798518/1‑179 (MQ=255)
aaaCAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACg < 2:798518/178‑1 (MQ=255)
aaTGCGGAACCAGAACAACGGGTCGATCCGCGAAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGACCCAGAAGACCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGa < 1:1148396/239‑1 (MQ=255)
aaCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACCGGTCGATCCGCGCAAAGCCGCCGTCGCCGCGGCTATTGCCCGCGCTCAAGCCCGCAAACTG‑GAACAGCAACAGGCTGATTACGAGCCCGAAGAACCGG‑TCGAGCCGCGCAACGCCCCCGGCGCAGccaca > 2:874093/1‑236 (MQ=14)
aaCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCTCCAAACCCCGCAAGCCG‑GACCAGCAACCGGCCAATGCCGAGCCCGACGACAAGG‑TCGATACGCGCAAAGCCGCCGTCGAAGCGGca > 2:368375/1‑238 (MQ=11)
aaCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGACGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGaa > 1:570265/1‑200 (MQ=255)
aCCCGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa < 1:157573/239‑1 (MQ=255)
aGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGATCCAGAAC‑ACAGGCTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTagt > 2:1093172/1‑236 (MQ=255)
acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGcc < 1:1122394/238‑1 (MQ=255)
ggTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAAAAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCCGCGCCa > 1:420682/1‑239 (MQ=255)
ggTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCACGCGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCGGTGCCAGAAGAACAGG‑TCGATCCGCGCAAAGCCGCCGCCGAAGCCGCTacacaccgacccg > 1:162676/1‑227 (MQ=14)
acGATCCGCGAAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCAAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCa < 1:532750/236‑1 (MQ=255)
tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAATCCGCTATTGCCCGTGCAAAAGAACGCAAGCAG‑GAACAGCAACAGGCTAATGCCGAGCAAGAACAACAGG‑TCGATCCGCGCAAAg > 1:188064/1‑203 (MQ=255)
ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgcgcg < 1:968480/239‑1 (MQ=255)
cAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGACGCGGCTATTGCCGACGCCAAAGCGCGCaaaa > 1:142335/1‑238 (MQ=255)
cgccgTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAAc < 1:1093172/239‑1 (MQ=255)
cGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCAATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCaa < 1:230102/238‑1 (MQ=255)
cGCTATTGCCCATGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGAGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGc < 1:1098349/237‑1 (MQ=255)
ccGGGCCAAAGCGCGCAAGCTGGAACAGAAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGc < 1:320918/239‑1 (MQ=255)
tGCCAAAGCGCGCAAGCTGGGACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGGAGCCGCGATTGCCCGGGCCAAAGCAC‑CAAACAGCGAACAGCAACAGGCTAATGCCGAACCCCAAAAACCGG‑TCGATCCGCGCAAAGCCGCCGGTGCAGCAGCTATTGCACGAGCCAAAGGCAGCAAGCGGGGAGAGCAACCGCCtctatcggagcccg > 2:182591/1‑226 (MQ=11)
tGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAACAGGACCAGCAACCGGCTAAAGCTGAGCCat > 2:1109679/1‑238 (MQ=255)
cAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGACCAGGTCGATCCGCGCAAAGCGGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGCCTAATGCGGAGCCagaa < 1:903124/238‑1 (MQ=255)
cAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCGGCCGTCGACGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaag > 1:1125459/1‑239 (MQ=255)
aaaGCGGGCAAGCTGGAACAGTAACAGGCTAATGCGGAACCAGAGACACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCTGAACCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaaga < 1:761923/239‑1 (MQ=255)
cAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCCCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCCGAAGAACAGGTTGATCCGCGCaact > 1:236732/1‑236 (MQ=255)
aaTGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGa < 1:368375/239‑1 (MQ=255)
aTGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGAAAACGG‑GAACAGCAACAGGCTAATGCCGAGCCAGAATCACAGG‑TCGATCCGCGCAAAGCCGAAGACGAACCCGCTATTGCCGGCGCCACAGCGCCCAAAAGGGAACAGCAACCAGCCAGAGCCGAGCCAGGAGAACAGGTTGAACCGCGCCAATCTGCCggcca > 2:1095070/1‑234 (MQ=14)
aaCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGCGCCAACGCACACAAGCAG‑GCACACCAACAGGCCAATGCCGAGCAAGAACAGCAGG‑TCGATCCGGGCAAAGCCGCTGGTGAAGCAGCTCTGGCACGCGCCAAAGCGCGCACGACACAACAGCAACCGGCTCATGCTGCGACAGAACAAAACGCTCATCCGcacatcgcccgagacgcacacact > 2:33670/1‑219 (MQ=2)
aaCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGCGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGCAGCGGCTATTGCCCGACCCAAAGCGCGCAACCCGGAACAGCAACCGGCAGATGCGGAGCCAGAAAAACAGGTCGATCCCCGCAACGAGACCCTCGAggcggcc > 2:895725/1‑238 (MQ=14)
aaCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTACAGCCGAGGCCAAAAAACAGGTTGGTCGGCGCAACGCTGCCGttgcacccgcc > 2:900843/1‑229 (MQ=14)
aagaaCGGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCa < 1:1003544/239‑1 (MQ=255)
agaagaGGTCGAGCCACGGAAAACCGCCGTGGAAGCCGCTAGTACGCGTGCCACAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCa < 1:209239/238‑1 (MQ=17)
agaaCAGGACGACCCGCGCAAAACGGCCGTCGAAGCCGCTCTTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCa < 1:375740/238‑1 (MQ=255)
gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATG‑GGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCaaa > 1:65451/1‑239 (MQ=255)
gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCACGCAAACTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAAAAACAGG‑TCGATCCGAGCAAAGCGGCCGTCGAGGCGGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACCGCAAACGGCTAATACGGAGCCAGAAGAACAGGTTGATCCGAGCAAACCAGCAGTCACAACGGCAATTGCCcgcgacc > 2:775894/1‑235 (MQ=14)
aTCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTG‑GAACAGCAACAGGCTAATGCGGAACCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCCCGCAAGCCGGCACAGCAACAGGCTAATGCAGCGCCAGAAGAACAGGGCGATCCGCGCAAACCGGCCGTCGTACCGGcgtttcgccgggcccagac > 2:467074/1‑220 (MQ=14)
tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCa < 1:1109679/238‑1 (MQ=255)
tCCGCCAAACGCCGCCGTCGAAGCCGCTATTCCCCGTGCCAGAGCACGCAAGCTG‑CAACAGCAACAGGCTAATCCGGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGa < 1:357181/174‑1 (MQ=14)
gcgcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCCCGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGG‑TCGATCCGCGCAAAGCGGCCGTCGACGCGGCTATTGCCCGCGCCCAAGCGCGCAAACGCGCACACCAACAGGCTACTGCGGATCCAGAAGAACCAGCGGATCCCCGCAAAGCTGCCGGCGAAGCGGCTATTGCCCCCGCCAAAGCCCgaa > 2:980046/1‑237 (MQ=14)
gcgaAAAGCCGCCGTGGAAGCAGGTATTGCCCGTGCCAAAGCGCGCAAGCTG‑GAACAGCAGCAGGCGAATGGTGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACg < 1:308384/237‑1 (MQ=17)
cgcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACg < 2:310443/44‑1 (MQ=38)
gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCCCGCGCCAAAGCACGCAAg > 1:477571/1‑239 (MQ=255)
gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCACAGCCAGCaa > 1:958329/1‑238 (MQ=255)
aGCCGCCGTCGAAGCCGCTATGGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTgg < 1:1054818/239‑1 (MQ=255)
cgcagTCGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTGATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAAc < 1:42409/239‑1 (MQ=255)
ccgTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACa > 1:580248/1‑238 (MQ=255)
gTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACTGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCa < 1:22875/239‑1 (MQ=255)
cGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCt < 1:463422/238‑1 (MQ=255)
gCTATTGCCAGTCAAAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTaa < 1:329285/239‑1 (MQ=255)
tATTGACCGTGCCAAAGCCAGCAAACTG‑GAACAGCCACAGGCAAATACCGAAACAGAACACCAGG‑ACGATCCGCGCAAATCCGCCGTTGAAGCCGCTATTGACCGAGCCAAAGCGCGCAAACGGGAACAGCAACTGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATg < 1:963742/239‑1 (MQ=14)
ccGTGCCAAAGCGCGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTAc < 1:1149463/239‑1 (MQ=255)
cGTGCCAAAGCGCGCAAGCTG‑GAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCCAAGCACGCAACCTGGCACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATACGCGCAAAGCCGCCGACGACCCCGACCTGCCCCGCGCCTACGCCCGCAAGCTGGagccgccacgcgcagacacgcaag > 2:1137714/1‑215 (MQ=11)
tGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGCGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGCCGAAGCGGCTATTGCGCGCGCTCACACACACAACCCTCAACAGCAACCAGCTaaatctgtcacac > 2:971187/1‑228 (MQ=14)
tGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGCATCGGCTATTGCACGCGCCAAAGCCTGCAAGCTGGCACCGCAATAGGcactagaggtctcat > 2:604478/1‑225 (MQ=17)
cgCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGCACAGCAACCGGCTAACGCGGAGCCAGAAGAACAGGGTGATCCGCGCAAAGCAGCAGTCGCCGCGGCTATTCCCCGCGACAAGGCCCGAAAACTGGCCCAGACACAGTATAATGAGGCACCac > 2:111777/2‑238 (MQ=14)
gCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCaga > 1:75369/1‑239 (MQ=255)
aGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCa < 1:954066/104‑1 (MQ=255)
aGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCa > 2:954066/1‑104 (MQ=255)
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ATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTG‑GAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGG‑TCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGA > NC_000913/1708576‑1709044
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
