Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F17 I0 R1
|
66 |
109.4 |
2318666 |
93.6% |
2170271 |
226.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,890,491 |
A→C |
19.4% |
G14G (GGT→GGG) |
yeaY ← |
Slp family lipoprotein, RpoE‑regulated |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,890,491 | 0 | A | C | 19.4%
| 116.6
/ 3.6
| 61 | G14G (GGT→GGG) | yeaY | Slp family lipoprotein, RpoE‑regulated |
| Reads supporting (aligned to +/- strand): ref base A (32/15); new base C (2/12); total (34/27) |
| Fisher's exact test for biased strand distribution p-value = 5.26e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AGAAGGTTCTCCCAGCGTCGGTCTGGCTCCGCTGTCCAGCGGTACGGTAGCAATTTCCAGGCGAGTTTTCCCTTGCTGGTTTTGTACCGCAACCACTTTGCCACCAAAGCGTGCCT‑CCTGAC‑CAACGTACAGCTGCGGCGCACTCATCACCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAACCGGTTCGGCATGTTCCACCGCCACCGTTTTACCCTCAGCAAACATCTGACACGCAATCGGCAGCATATCTTCAGCAGCAGGCAGTAACACTTCGCCATCGCGC > NC_000913/1890254‑1890725
|
agaAGGTTCTCCCAGCGTCGGTCTGGCTCCGCTGTCCAGCGGTACGGTAGCAATTTCCAGGCGAGTTTTCCCTTGCTGGTTTTGTACCGCAACCACTTTGCCACCAAAGCGTGCCT‑CCTGAC‑CAACGTACAGCTGCGGCGCACCCATCACCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTa < 1:284693/238‑1 (MQ=255)
ctcCCAGCGTCGGTCTGGCTCCGCTGTCCAGCGGTACGGTAGCAATTTCCAGGCGAGTTTTCCCTTGCTGGTTTTGTACCGCAACCACTTTGCCACCAAAGCGTGCCT‑CCTGAC‑CAACGTACAGCTGCGGCGCACTCATCACCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGt < 1:710751/239‑1 (MQ=255)
ctcCCAGCGTCGGTCTGGCTCCGCTGTCCAGCGGTACGGTAGCAATTTCCAGGCGAGTTTTCCCTTGCTGGTTTTGTACCGCAACCACTTTGCCACCAAAGCGTGCCT‑CCTGAC‑CAACGTACAGCTGCGGCGCACTCATCACCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGt < 1:413443/239‑1 (MQ=255)
cGTCGGTCTGGCTCCGCTGTCCAGCGGTACGGTAGCAATTTCCAGGCGAGTTTTCCCTTGCTGGTTTTGTACCGCAACCACTTTGCCACCAAAGCGTGCCT‑CCTGAC‑CAACGTACAGCTGCGGCGCACTCATCACCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACCCAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCtt > 1:510228/1‑239 (MQ=255)
cGTCGGTCTGGCTCCGCTGTCCAGCGGTACGGTAGCAATTTCCAGGCGAGTTTTCCCTTGCTGGTTTTGTACCGCAACCACTTTGCCACCAAAGAGTGCCT‑CCTGAC‑CAACGTACAGCTGCGGCGCACTCATCACCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCAGGCAC‑AGGGACACAACCGCTCAGACTTACCGCAAACGTACCTGCCAGTCTGCCtt > 2:718547/1‑239 (MQ=255)
gTCGGTCTGGCTCCGCGGTCCAGCGGTACGGTAGCAATTTCCAGGCGAGTTTTCCCTTGCTGGTTTTGTACCGCAACCACTTTGCCACCAAAGCGTGCCT‑CCTGAC‑CAACGTACAGCTGCGGCGCACTCATCACCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACACACCCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGcc < 1:991280/236‑1 (MQ=255)
tCGGTCTGGCTCCGCTGTCCAGCGGTACGGTAGCAATTTCCAGGCGAGTTTTCCCTTGCTGGTTTTGTACCGCAACCACTTTGCCACCAAAGCGTGCCT‑CCTGAC‑CAACGTACAGCTGCGGCGCACTCATCACCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTCCCTGCCAGTATGCCTTTg > 1:1069218/1‑239 (MQ=255)
tGGCTCCGCTGTCCAGCGGTACGGTAGCAATTTCCAGGCGAGTTTTCCCTTGCTGGTTTTGTACCGCAACCACTTTGCCACCAAAGCGTGCCT‑CCTGAC‑CAACGTACAGCTGCGGCGCACTCATCACCCGTACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACa < 1:14219/239‑1 (MQ=255)
tGGCTCCGCTGTCCAGCGGTACGGTAGCAATTTCCAGGCGAGTTTTCCCTTGCTGGTTTTGTACCGCAACCACTTTGCCACCAAAGCGTGCCT‑CCTGAC‑CAACGTACAGCTGCGGCGCACTCATCACCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACa < 1:181292/239‑1 (MQ=255)
cTGTCCAGCGGTACGGTAGCAATTTCCAGGCGAGTTTTCCCTTGCTGGTTTTGTACCGCAACCACTTTGCCACCAAAGCGTGCCT‑CCTGAC‑CAACGTACAGCTGCGGCGCACTCATCACCCGAACTAAATCTTGTTGCGGCGTGGGGCTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTg > 1:373210/1‑239 (MQ=255)
gccaaGCGGTACGTGACAAATTTCAGGCCGTTTTTTCCTTTGTTGTTTTTCACCCGCAACCACTTTCCCCCCAAAGCGTGCCT‑CCTGAC‑CAGCGTACGGCTGCGCCCAACTCAGCCCCCGACCAAAATCTGGTGGGGGCGGGGACCGGTTGCTTTAAAGGGCTTCCGGCAA‑AGTGACACAACCGCTCAGAATTAGCGAAACCGTCCCTGCCAGTATGCCTTTGATAACATTCTTTTGaa < 2:658731/235‑1 (MQ=255)
aactattctcaggccGAGTTTTCCTTGGCTGTTTTTGT‑CCCCAACCCCTGTCACCCGCAACCCTGCCC‑TCTGCCACACCGGACCGCTGCCGCCCACTACCCCCCCAAATAAAATTTTGTTGCGGCGTGGGACTGCGGCCTTAAATGGGGTCC‑GCACAAGTGACAAACCCCCTCAGCATTGGCGCAAACGTCCCTCCCAGTATGCCTTGGATAACATTCTTTTGAACCGCCATGGTGCGa < 2:761263/225‑1 (MQ=255)
aTTTCCAGGCGAGTTTTCCCTTGCTGGTTTTGTACCGCAACCACTTTGCCACCAAAGCGTGCCT‑CCTGAC‑CAACGCACAGCTGCGGCGCACTCATCACCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGAACAAACCGCCCACCATTAGAGCAAACGCACCTGCCAGTATGCCCTTGATAACATTCTTTTGCACCGCCATGGAGCGACTCCt > 2:947053/1‑239 (MQ=255)
gtgTTTCCCCTTGTGGGTTTTATCCCGCAACCTCTTTGCCCCCAACGCG‑GCCTCCCGGCC‑CAACGTACCGCTGCGGCCCACTCACCCCCCGAACTAAATCTTTTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTtctc < 2:308256/236‑1 (MQ=255)
gcgTTTTCCCTTGCTGTTTTTGTACCGCACCCACTTCGCCCCCAAAGTGTGCCT‑CCTGAC‑CAACGTACAGCTGCGGCGCCCTCACCCCCCGAGCTAATTTTTGTTGCGGCGTGGGACTGCGGCTTTTAATGGCGCCCGCCAC‑AGTGACCCAACCGCTCAGCATTAGCGAAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTtctc < 2:948585/236‑1 (MQ=255)
ttCCCTTGCTGTTTTTGTACCGCAACCACTTTGCCACCAAAGCGTGCCT‑CCTGAC‑CAACGTACAGCTGCGGCGCACTCATCCCCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCa < 1:836769/239‑1 (MQ=255)
ttCCCTTGCTGGTTTTGTACCGCAACCACTTTGCCACCAAAGCGTGCCT‑CCTGAC‑CAACGTACAGCTGCGGCGCCCTCATCACCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGAAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCa < 1:513404/239‑1 (MQ=255)
gCTGGTTTTGTACCGCAACCACTTTGCCACCAAAGCGTGCCT‑CCTGAC‑CAACGTACAGCTGCGGCGCACTCATCACCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGAAACAACCGCTCAGCATTAGCGCAACCGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGTCATACTCtt > 1:199519/1‑239 (MQ=255)
gCAACCACTTTGCCACCAAAGCGTGCCT‑CCTGAC‑CAACGTACAGCTGCGGCGCACTCATCACCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCa < 1:982765/218‑1 (MQ=255)
gCAACCACTTTGCCACCAAAGCGTGCCT‑CCTGAC‑CAACGTACAGCTGCGGCGCACTCATCACCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCa > 2:982765/1‑218 (MQ=255)
cAACCACCTTGCCACCAAAGCGTGCCT‑TCTGAC‑CAACGTACAGCTGCGGCGCACTCATCACCCGAACTAAATCTTGTTGCGGCGTGGGAATGCTGCCTTTAACGGCGTGCGGCAC‑AGTGAGACAACTGCCAAGCTTTAGTGCAACCGTCCCTGCTAGTATGCCTTTGATAACATACTTTTGAACAAACATGGTGCGACTCCCTTTTTATTCAGCGCATACCATTAACAATCAATCttt > 2:591655/1‑238 (MQ=255)
cACTTGCCCCCCAAAGCGTGCCC‑CCTGCC‑CAGCGTGCGGCTCCGGCGCCCTCACCACCCGAACTAAATCTTTTTCGGGCTTGGGACGGCTGCCTTTAATGGGGTCCGGCAC‑AGGGACACAACCGCTCAGCATTAGCGCAAACGTCCCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCg < 2:593984/239‑1 (MQ=255)
ccaccaAAGCGTGCCT‑CCTGAC‑CAACGTACAGCTGCGGCGCACTCATCACCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGCGCATACTCTTAAGATTCATTCTTTGCCCGGAAGttt > 1:793618/1‑239 (MQ=255)
accaAAGCGTGCCT‑CCGGAC‑CACCGTCCAGCTGCGGCGCCCTCATCACCCGAACTAAATCTTGTTGCGGCGGGGGACTGCTGCCTTTAAGGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGAAAACGTCCCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTttct < 1:682334/239‑1 (MQ=255)
cGTACAGCTGCGGCGCCCTCTCCCCCCGACCAAAATCTTGTGGCGGCGGGGGCTTGCTCCCTTTAATGGCGTCCGGCAC‑AGTGACACACCCGCTCAGCATTAGCGAAAACGTCCCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATg < 2:584837/222‑1 (MQ=255)
cGTACAGCTGCGGCGCACTCATCACCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGtaaa > 1:906107/1‑239 (MQ=255)
cgCTGCGGCGCACTCATCACCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACACACCCGCTAAGCATTAGCGCACACCTACCTGCCAGTATGCCTTTGATCAAATTCTTTTGAACCGCCATGGGGAGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCCTTGCCCGGCAGTGTCTTCCATCCGAAGTTGTTACGcaattaaa > 2:236519/2‑238 (MQ=255)
atttGCGCCCCACGCATCACCCAAACAAAAGCTGGTTGCGGATTGGTACTGCTTCCTTTATTGGCTGCCGGCAC‑AGTGACCAAACCGCTCGGCATTAGCCCAAACCTACCGGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGtaaataaa < 2:991696/235‑1 (MQ=255)
gcgtatgtgtaaaagagacgggAACTAAATCGTGTTGCGGCGTGGGACTGTGGCCTTTAGTGCCGCCCGGCAC‑ATTGCCACAACCGCTCAGAATTAGCGCAAACTTCCCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAAc < 2:702722/217‑1 (MQ=255)
gcggcgCACTCATCCCCCAACCTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGCCACAACCGCTCAGCATTAGCGCAAACTTCCCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAACCGGt < 1:427915/239‑1 (MQ=255)
cggcgCACTCATCACCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACgttgtt > 1:584837/1‑222 (MQ=255)
cggcgCACTCATCACCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAACCGGt > 1:282600/1‑238 (MQ=255)
gcACTCATCACCCAAACAAAATCTGTTTGCGGCGTGGGACTGCTGCCTGTAATGGCTTCCGGCAA‑GGGAACCCAACCGCTAAGCATTAGCGCAAACGTCCCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAACCGGTTCGGc < 2:282600/239‑1 (MQ=255)
aaCTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCCTGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGTCGTTGTTACGTAAATAAACAGGCTCGGCATGTTacaccgcc > 2:533825/1‑238 (MQ=255)
aaCTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAACCGGTTCGGCATGTTccaccgcc > 1:539411/1‑238 (MQ=255)
aaCTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAACCGGGTCGGCATGTTccaccgcc > 1:659754/1‑238 (MQ=255)
aaCAAAATCTTGTTGCGGCGTGGGACTGCTGCTTTTAATGGCGTCCGGCCC‑GGTGCCACAACCTCTCAGCATTAGCGCAAACGTCCCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAACCGGTTCGGCATGTTccaccgcca < 1:588021/239‑1 (MQ=255)
acaaaaTCTTGTGGCGGCGTGGGATTGCTGCCTTTAATGGCGTCCGCCAC‑AGGGACACAACCGTTCAGCATTACCCCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAACCGGTTCGGCATGTTccaccgcca < 1:947053/235‑1 (MQ=255)
tgttgCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAACCGGTTCGGCa > 1:702722/1‑216 (MQ=255)
gcgTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTttctt > 1:28388/1‑172 (MQ=255)
gctgcCTTTAAGGGCTTCCGGCAC‑ATTGCCACAACCGCTCAGCATAAGCGCAAACGTCCCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAACCGGTTCGGCATGTTCCACCGCCACCGTTTTACCCTCAGCAAACATCTGac < 1:796282/239‑1 (MQ=255)
ctgcCTTTAATGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGCGCGACACCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTGTCTTCCATGCGTCGTTGTTACGTAAATAAACCGGTTCGGCATGTTCCACCGCCACCGTTTTATACTCAGCAAACATCTgcc > 2:1098817/1‑236 (MQ=255)
tttAATGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAACCGGTTCGGCATGTTCCACCGCCACCGTTTTACCCTCAGCAAACATCTGACACGCaa > 1:55624/1‑239 (MQ=255)
tCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAACCGGTTCGGCATGTTCCACCGCCACCGTTTTACCCTCAGCAAACATCTGACACGCAATCGGCAGCat > 1:725477/1‑239 (MQ=255)
tCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGAGCGACTCCTTTTTTTCTCAGGACATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGGTGTTACGTAAATAAACCGGTTCGGCATGTTCCACCGCCACCGTTTTACCCTCAGCAAACATCTGACACGCAATCGGCAGCat > 2:1096870/1‑239 (MQ=255)
tCCAGCAC‑AGTGACACAACCGCTCAGCATTACCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTCCCACTCCTTTTTTTCTCAGACCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCCTGCGCCGTTGTTACGTAAATAAACCGGCTCGGCATGTTCCACCGCCACCGCTTTACCATCAGCAAACATCTGACAAGCAATCGGCACCat > 2:100743/1‑239 (MQ=255)
acacAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAACCGGTTCGGCATGTTCCACCGCCACCGTTTTACCCTCAGCAAACATCTGACACGCAATCGGCAGCATATCTTcagcagc > 2:256986/1‑239 (MQ=255)
caataCCGCTCTTTATTAGCTCACACGTCCCTTCCAGTATGCCTTTGACAACTTTTTTTTGAACCGCCATGGTGCGCCTCCTTGTTTTCTCATGGCATACTCTTAAGATTCATTCTTTGCTCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAACCGGTTCGGCATGTTCCACCGCCACCGTTTTACCCTCAGCAAACATCTGACACGCAATCGGCAGCATATCTTcagcagca < 2:659754/235‑1 (MQ=255)
aatccgccctgcttaaccacAAACTTCCCTGCCAGTATGCTTTTGATAACATTCTTTTGAACCGCCATGATGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAACCGGTTCGGCATGTTCCACCGCCACCGTTTTACCCTCAGCAAACATCTGACACGCAATCGGCAGCATATCTTCAGCAgcagg < 2:640032/220‑1 (MQ=255)
ccGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAACCGGTTCGGCATGTTCCACCGCCACCGTTTTACCCTCAGCAAACATCTGACACGCAATCGGCAGCATATCTTCAGCAgcaggcag > 1:1079572/1‑239 (MQ=255)
ccGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATAATCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAACCGGTTCGGCATGTTCCCCCGCCACCGTTTTACCCTCCGAAAACATCTGACACGCAATCGGCAGCCTATCTTAAGCCgcaggcag > 2:237725/1‑239 (MQ=255)
gCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAAGCGCCATGGTGCGACTCCTTTTTTTCTCAGGGGATACTCTTTAGCTTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAACCGGTTCGTCATGTTCCCCCGCCACCGTTTTACCCTCAGCAAACATCTACCACGCAATCCGCAGCATTCCTTAACCATCAGgtagta > 1:961013/1‑239 (MQ=255)
cTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACGGCCATGGTGCGACTCCTTTTTTTCTCACGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAACCGGTTCGGCATGTTCCACCGCCACCGTTTTACCCTCAACAAACATCTGACACGCAATCGGCAGCATATCTTCAGCAGCAGCCAGTa > 2:663522/1‑238 (MQ=255)
cTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAAACGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTTTTCCATGCGACGCTGTTACGTAAATAACCCGGTTCGGCATGTTCCACCGCCACCGTTTTACCCTAAGCAAACATTTGACACCAAATCGGCAGCATATCTTCAACAgcagccagca > 2:455240/1‑236 (MQ=255)
aGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAACCGGTTCGGCATGTTCCACCGCCACCGTTTTACCCTCAGCAAACATCTGACACGCAATCGGCAGCATATCTTCAGCAGCAGGCAGTAac > 1:574325/1‑237 (MQ=255)
ctcAAACGTACCTTCAAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTATGTAATTAAACCGGTTCGGCATGTTCCACCGCCACCGTTTTACCCTCAGCACACATCTGACACGCAATCGGCAGCATATCTTTCTCAGCAGGCCGCAACACCTCCCCa > 2:290786/3‑238 (MQ=255)
aaCGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTcc < 2:447323/58‑1 (MQ=255)
aaCGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTcc > 1:447323/1‑58 (MQ=255)
aaCGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAACCGGTTCGGCATGTTCCACCGCCACCGTTTTACCCTCAGCAAACATCTGACACGCAATCGGCAGCATATCTTCAGCAGCAGGCAGTAaca > 1:739952/1‑226 (MQ=255)
aaCGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAACCGGTTCGGCATGTTCCACCGCCACCGTTTTACCCTCAGCAAACATCTGACACGCAATCGGCAGCATATCTTCAGCAGCAGGCAGTAACACTTCGCCATcgcg < 1:521086/239‑1 (MQ=255)
aaCGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAACCGGTTCGGCATGTTCCACCGCCACCGTTTTACCCTCAGCAAACATCTGACACGCAATCGGCAGCATATCTTCAGCAGCAGGCAGTAACACTTCGCCATcgc > 2:521086/1‑238 (MQ=255)
aCGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAACCGGTTCGGCATGTTCCACCGCCACCGTTTTACCCTCAGCAAACATCTGACACGCAATCGGCAGCATATCTTCAGCAGCAGGCAGTAACACTTCGCCATCgcgc < 1:520515/239‑1 (MQ=255)
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AGAAGGTTCTCCCAGCGTCGGTCTGGCTCCGCTGTCCAGCGGTACGGTAGCAATTTCCAGGCGAGTTTTCCCTTGCTGGTTTTGTACCGCAACCACTTTGCCACCAAAGCGTGCCT‑CCTGAC‑CAACGTACAGCTGCGGCGCACTCATCACCCGAACTAAATCTTGTTGCGGCGTGGGACTGCTGCCTTTAATGGCGTCCGGCAC‑AGTGACACAACCGCTCAGCATTAGCGCAAACGTACCTGCCAGTATGCCTTTGATAACATTCTTTTGAACCGCCATGGTGCGACTCCTTTTTTTCTCAGGGCATACTCTTAAGATTCATTCTTTGCCCGGAAGTTTCTTCCATGCGACGTTGTTACGTAAATAAACCGGTTCGGCATGTTCCACCGCCACCGTTTTACCCTCAGCAAACATCTGACACGCAATCGGCAGCATATCTTCAGCAGCAGGCAGTAACACTTCGCCATCGCGC > NC_000913/1890254‑1890725
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
