Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F9 I0 R1
|
105 |
139.1 |
2894862 |
97.5% |
2822490 |
224.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,040,143 |
A→G |
21.8% |
V222V (GTA→GTG) |
yedY → |
membrane‑anchored, periplasmic TMAO, DMSO reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,040,143 | 0 | A | G | 21.8%
| 104.3
/ 5.9
| 53 | V222V (GTA→GTG) | yedY | membrane‑anchored, periplasmic TMAO, DMSO reductase |
| Reads supporting (aligned to +/- strand): ref base A (27/13); new base G (2/10); total (30/23) |
| Fisher's exact test for biased strand distribution p-value = 2.70e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01 |
TATGCGCTGCGTGGAAGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGCTGAAATATCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACT‑GAT‑G‑A‑CC‑GTA‑GGTGTTTATGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGATTTATTGGTTCAG > NC_000913/2039906‑2040378
|
tctGCGCTGCGTGTAAGCGTGGTCGATTGTTGTGCCGTGGATTGGTTTTCCGCCGCACAAAGTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGGTCCGGAACAGATTCCAGTCCAGCAGGACCGCTTTATCGGCGGTGGGCTGAAATATCCTTATGTCGAATGATTGCGTCTCGACGAAGCAATGCAGCCGCTCACACT‑GAT‑G‑A‑CC‑GTA‑g < 2:693013/237‑1 (MQ=255)
aTGCGCTGCGTGGAAGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGCTGAAATATCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACT‑GAT‑G‑A‑CC‑GTA‑g < 1:1267266/238‑1 (MQ=255)
aTGCGCTGCGGGGAAGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGCTGAAATATCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACT‑GAT‑G‑A‑CC‑GTA‑g < 2:1163559/238‑1 (MQ=255)
ggAAGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGCTGAAATATCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACT‑GAT‑G‑A‑CC‑GTA‑GGTGTTTATGGc < 1:329958/238‑1 (MQ=255)
aaGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGCTGAAATATCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACT‑GAT‑G‑A‑CC‑GTA‑GGTGTTTATGGCaa < 1:59380/238‑1 (MQ=255)
tGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGGGGGGTGAAATATACTTTTTTTGAAGGGTGTCGTCTCGGCGAAGCAAAGCATTCCCTCCCACT‑GAT‑G‑A‑GC‑GGA‑GGGGTGTTTGGGAAGGCGtt > 2:884065/1‑239 (MQ=255)
gTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGGTGGAATATTCTTATGTCGCAGGGTTTGGTCTCGGCGAAGCAAAGCATCCGCCCCCACT‑GAT‑G‑A‑CC‑GCA‑GGGGGTTATGGGAAgggggta > 1:551336/1‑233 (MQ=255)
tgCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGTCGGTGGGCTGAAATATCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACT‑GAT‑G‑A‑CC‑GTA‑GGTGTTTATGGCAAGGCGTTACCGCCAC‑‑AAAAt > 1:918817/1‑239 (MQ=255)
gtttttCCGCTGCAAAATTTTCTGGCGCTTCGCGACCCTACCAGAAAGGCGAAGTATGTCTCTGTCAAAACAATTAATGCCCCGGAACAGACCCCGGGCCAGCGGGGCCGTTTAAGCGGCGGTGGGCTGAAATATCCTTATGTCGAAGGATGGCGTCTCGACGAAGAAATGCACCCGCTCACACT‑GAT‑G‑A‑CC‑GTG‑GGTGTTTATGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGt < 2:551336/237‑1 (MQ=255)
ttcccgcgccacaAATTGCTGGCGCTTGCGGAACCTCCCGGCAATGCGAAGTAGTTCGCTTTCGAAAAAATTTATGCACCGGAACAGATGCCAGGCCGGCAGGACCGCTTTATCGGGGGTGGGCTAAAATTTCTTTTTGTCGAAGGTTTGCGTCTCGACGAAGCAATGCACCCGCTCACACT‑GAT‑G‑A‑CC‑GTG‑GGTGTTTAGGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCg < 2:610713/230‑1 (MQ=255)
ccGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGAAGGACCGCTTTATCGGCGGTGGGGGGCAAAATACTTATTTCGAAGGGGTGTGGCTCCACCGAGCAACGGCCTCGCTCAACCT‑CAT‑GCA‑CG‑GTG‑GGGGTTT‑TGGCAAGGGGTTACCGCCACCAAAAATGgcgccggggagggc > 2:23939/1‑229 (MQ=255)
gCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGGTGGAATATTCTTATGTCGGAGGATTGGGTCTCGGCGAAGCAATGCATCCGCCCACACT‑GAT‑G‑A‑CC‑GGA‑GGTGTTTATTGTCAGGGGGTAACGCCCC‑‑AAAATTGGGCCGCGGT‑GGGGCTGCTtg > 1:589058/1‑239 (MQ=255)
cacaAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGCTGGAAAATCCTTTTTTTGCAGGAGTTCGTCTCGGCCCAGCAAAGCAACCGCTCCCACC‑TAT‑G‑ATCC‑TGG‑GGGGTTTTTGGAAGGGGGTTACC‑CCCC‑‑AAAAAAGCGCGCCCGG‑GGGACTGATtgt > 2:876796/1‑239 (MQ=255)
aaaatggtgggCGCTTGCAGACCCTCCCAGCAATGCGAAGTGTTCCGTTTTAAAAAAATTTTATGCCCCGGAAAAGATGCCAGGCCAGCAGGACCGTTTTATGGGCGGTGGTCTGAAATCTCCTTATGTCGAAGGTTGGCTTCTCGACGAAGAAATGCCTCCGCTCACACT‑GAT‑G‑A‑CG‑GGA‑GTTGTTTGGGGCAGGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGc < 2:640036/230‑1 (MQ=255)
tGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGGTGAAATATCCTTTTTTCGAAGGATTGTGTCTCGCCGAAGCAAAGCATCCGCCCACAAC‑TAT‑G‑A‑CC‑GTAGGGGGTTTTTGGAAAGG‑GTTATCCCCAC‑‑AAAATGGCGCGCCGGT‑GCGGCTGGTTGTGTCGTGG‑gaa > 1:276482/1‑239 (MQ=255)
cgttggCCAAACCTCCCGGCAATGCGAAGTATGTCGCTTCCGAAAAAATTTATGCACCGGAACAGATGCCGGGCCAGCAGGACCGCTTTATCGGGGGTGGGCTGAAATATCCTAATGTCGAAGGATGGCGTCTCGACGAGCCATTGCACCCGCTCACACT‑GAT‑G‑C‑CC‑GTG‑GGTGTTTAGGGCAGGGCTTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAata < 1:630057/233‑1 (MQ=255)
cgcTTGCCGAACCTACCAGCAATGGGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGCTGAAATATCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAAGGCATCCGCTCACACT‑GAT‑G‑A‑CC‑GTA‑GGTGTTTATGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAata < 1:884065/238‑1 (MQ=255)
aTGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGCTGGAAAAATCTTTTGTCGGAGGGTTGTGTCTCGCCGGAGCAAATAATCCGCTCACCCT‑ATT‑T‑AGCG‑GTA‑GG‑GTGTTTTGCGAGGAGTTTCCGCCCC‑‑CAAAAAGCCCGCCGGT‑GCGCCTCGTTGTGGCGGGG‑CGATATCGCTTTTCAGAGATTaaaact > 2:1311350/1‑236 (MQ=255)
tGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGGTGTAAAATCCTTTTTTCGAAGGATTTGGGCTCGGCGGAAGAATGCGTACCCTCACACT‑CCT‑G‑A‑AC‑GTA‑GGGGTTTATGGGCAAGAGGTACCGCCCC‑‑ACAAAGGCGCGCCGGG‑GTGACGCATTTTTGCGTGG‑GAATATGGCCTTTAAGAGAGTAAATAGa > 2:391781/1‑239 (MQ=255)
gaattttgtcttttgcGAAAAAATTTGTGCCCGGAAACAGGTGCCGGGCCGGTAGGACCGCTTTCGGGGCGGTGGGCTGAAATATCTTTATGTCGAAGGTGTGCGTCGCGACGAAGCAAGGCTCCCGCTCAAACG‑GGT‑G‑G‑CG‑GTG‑GGTGTTTATGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAg < 2:304541/224‑1 (MQ=255)
aGTATGCCGTTTTAGAAACATTTTATCCCCCGAAACAGATGCCGGGCCAGCAGGCCCGTTTTACGGGGGGGGGGATAAAATATCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCACCCGCTCACACT‑GAT‑G‑A‑CC‑GTG‑GGTGTTTATGGAAAGGCTTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGt < 1:1167738/238‑1 (MQ=255)
gtctctttgaaaatattgtATTCACGGGAACAGTTGCGAGGCCAGCAGGACGGATTGACGGCCGGGGGGAGTAAATATCCTAATGTCAAAGGATGGTTTCCCGACGAAGGAATGCCCTCTCGCACGCT‑GGT‑G‑A‑CT‑GTA‑GTTTTTTAGGGTAGGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTa < 2:918817/220‑1 (MQ=255)
gTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGCTGGATAGAAAAAACTTATGGCGCAGGAGTGTGTCGCGACGGAGAAAAGACACCGCGCACACT‑GATGG‑A‑CA‑GT‑‑GGGGTTTATGGGAAGGAGGTGCGGCCAC‑‑AAAAAAGAGGGCCGGTGGCGA‑GGATTGTGCCGGGGAAAAAATGGGTTTAAGGGGGTaaaacagcgatggctat > 2:357845/1‑226 (MQ=255)
ccGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGCTGAAATATCCTTTTTTCGAAGGATTTCGTCTCGACGAAGCAATGCATCCGCCCACACT‑GAT‑G‑A‑CC‑GTA‑GGGGTTTATGGGAAGGCGGTACCCCCCC‑‑AAAAAGGCGCGCCGGG‑GCGACTGATTTTGCCGTGG‑GAATATTGCTTTTAAGGGATTAAAACGATAGTCAGTATTAAACTGACCCGCGAGCGTCCGc > 1:1143458/1‑238 (MQ=255)
gcaaagcgttgccgcgccagCGGGACCGTTTTACGGGGGGGGGGCGGAAATCCCTTTAGGGAGGAGGATGGCGTCTGCAGGAACCAATGCACCCGCAC‑CAAT‑TAC‑G‑G‑CCGGTG‑GGTGTTTTGGGCAAGGCGCTGCCGGCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑ACATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCa < 2:595380/224‑1 (MQ=255)
cGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGCTGGAAAATTCTTATGTCGCAGGATTGTGTCTCGGCGAAACAATGCATCCGCCCACACT‑GAT‑G‑A‑CC‑GCA‑GGGGGTTATGGCAAGGGGTTACCCCCCC‑‑AAAAAAGCGCGCCGGG‑GCGGCGGGTTTTGGCGTGG‑GGAAAAGGCTTTTAAAGGGGTAAAAAAATAATAAGTATTAAGcaggacccccagcgtgccccc > 2:622794/1‑219 (MQ=255)
agagGCCAGGCCAGCAGGCCCGTTTTATCGGCGGTGGGCTGAAATATCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCACCCGCTCACACT‑GAT‑G‑A‑CC‑GTA‑GGTGTTTAGGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAaccacc < 1:1347964/239‑1 (MQ=255)
aTGCCAGGCCAGCAGGACCGCTTTATCGGCGGCGGGGTTGAATCAACTTATTTTGCAGGAGTGTGTCTCCCCGAAACAATGCATCCCCCCCCACT‑GCT‑G‑T‑CC‑GTA‑GGTGGTTGTGGCAAGGTGGTACCCCCCC‑‑AAAAACGCGAGGCCGG‑GGGGCTGATTCTGCCGTGG‑AGATCTTGGGTTTAAGGGTGTAAAACGAGAGGGAGGATTGAGTTGGCCCCCGAGctgccccccaccccccg > 2:1350485/1‑223 (MQ=255)
gtgcaggacagAAGGACCGATTTCGCGGGGGGGGGCTGAAATATCTTTATGTGGAAGGATGGCGATGCGAGAAAGAAATGCACCCGCTCA‑ACTGGAT‑G‑A‑CT‑GTG‑GTTGTTTATGGCAGGGCTTAACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTg < 2:1149170/235‑1 (MQ=255)
aagcggGACCGTTTTATCGGGGGGGGGTTAAAATATCCTTATGTGGAAGGATTGCGTCTCGCAGAAGAAATGCACCCGCTCACACG‑GAT‑G‑A‑CC‑GTG‑GGTGTTTATGGCAGGGCTTTCCCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGc < 2:516168/238‑1 (MQ=255)
cggcggGGGGCTGAAATATCCTTATGGCGAAGGATTGCGTCTCGACGAAGCAATGCCTCCGCTCACCCG‑GAT‑G‑A‑CG‑GTA‑GGTGTTTAGGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATAc < 2:1143458/238‑1 (MQ=255)
tGAAATATCTTTATGCCGAAGGATTGCGTCTCGACGAAGCAAGCCACCCGCTCACACT‑GAT‑G‑C‑CC‑GTA‑GGTGTTTATGGAAGGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGc < 1:1350485/238‑1 (MQ=255)
tGAAATACCTTTATGGGGAAGGTGTGCGTCGCGACGAAGCAATGACTCCGCTCACACT‑GAT‑G‑C‑CG‑GTG‑GGTGTTTAGGGCAAGGCTTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGc < 2:589058/238‑1 (MQ=255)
atCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACT‑GAT‑G‑A‑CC‑GTA‑GGTGTTTATGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGtt < 1:421143/239‑1 (MQ=255)
aTGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACT‑GAT‑G‑A‑CC‑GTA‑GGTGTTTATGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTc > 1:386309/1‑152 (MQ=255)
aTGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACT‑GAT‑G‑A‑CC‑GTA‑GGTGTTTATGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTg > 1:165025/1‑190 (MQ=255)
aTGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACT‑GAT‑G‑A‑CC‑GTA‑GGTGTTTATGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCg > 1:466371/1‑239 (MQ=255)
aTGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACT‑GAT‑G‑A‑CC‑GTA‑GGTGTTTATGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCg > 1:414718/1‑239 (MQ=255)
aTGTCGAAGGATTGCGTCTCGAAGAAGCAATGCATCCGCTCACACT‑GAT‑G‑A‑CC‑GTA‑GGTGTTTATGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCg > 2:468618/1‑239 (MQ=255)
gAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACT‑GAT‑G‑A‑CC‑GTA‑GGTGTTTATGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTCAGCTGACCCGCGAGCGTCCGCCACCCACCTGGAATCTGGCAGCGCCTGACGAATACGGATTTTACGCCAATGTTACTACGTATGt > 1:1090895/1‑239 (MQ=255)
aaGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACT‑GAT‑G‑A‑CC‑GTA‑GGTGTTTATGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGtt > 2:1138231/1‑239 (MQ=255)
aGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACT‑GAT‑G‑A‑CC‑GTA‑GGTGTTTATGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTg > 2:236384/1‑239 (MQ=255)
tcaccgaACCAATGCATCCGCTCACACT‑GAT‑G‑A‑CC‑GTG‑GGTGTTTATGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCgcgc < 1:658134/235‑1 (MQ=255)
gCAATGCATCCGCTCACACT‑GAT‑G‑A‑CC‑GTA‑GGTGTTTATGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTcaca > 1:1205098/1‑239 (MQ=255)
tGCATCCGCTCACACT‑GAT‑G‑A‑CC‑GTA‑GGTGTTTATGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCAGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCt > 2:478725/1‑239 (MQ=255)
ccGCTCACACT‑GAT‑G‑A‑CC‑GTA‑GGTGTTTATGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGACTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATAAGGTTTTTACGCCAACGTTAATCCGTATGTTGATCAACCGAGCTGGTCACAGGCGAcctc > 2:867746/1‑237 (MQ=255)
cacaCT‑GAT‑G‑A‑CC‑GTA‑GGTGTTTATGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGAt > 1:320423/1‑239 (MQ=255)
acT‑GAT‑G‑A‑CC‑GTA‑GGTGTTTATGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAg > 1:1232066/1‑118 (MQ=255)
cggat‑g‑a‑CC‑GTA‑GGTGTTTAGGGAAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGATTTAt < 1:391781/237‑1 (MQ=255)
at‑g‑a‑CC‑GTA‑GGTGTTTATGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTAACGAACGATTTATTgg > 2:548441/1‑239 (MQ=255)
cc‑GTA‑GGTGTTTATGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGATTTATTGGTTCa > 2:590627/1‑239 (MQ=255)
gTA‑GGTGTTTATGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGATTTATTGGTTCAg > 1:116021/1‑238 (MQ=255)
gTA‑GGTGTTTATGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGATTTATTGGTTCAg > 1:519752/1‑238 (MQ=255)
|
TATGCGCTGCGTGGAAGCGTGGTCGATGGTGGTGCCGTGGATTGGTTTTCCGCTGCACAAATTGCTGGCGCTTGCCGAACCTACCAGCAATGCGAAGTATGTCGCTTTCGAAACAATTTATGCACCGGAACAGATGCCAGGCCAGCAGGACCGCTTTATCGGCGGTGGGCTGAAATATCCTTATGTCGAAGGATTGCGTCTCGACGAAGCAATGCATCCGCTCACACT‑GAT‑G‑A‑CC‑GTA‑GGTGTTTATGGCAAGGCGTTACCGCCAC‑‑AAAATGGCGCGCCGGT‑GCGACTGATTGTGCCGTGG‑AAATATGGCTTTAAAGGGATTAAATCGATAGTCAGTATTAAGCTGACCCGCGAGCGTCCGCCAACCACCTGGAATCTGGCAGCGCCTGACGAATACGGTTTTTACGCCAACGTTAATCCGTATGTTGATCACCCGCGCTGGTCACAGGCTACCGAACGATTTATTGGTTCAG > NC_000913/2039906‑2040378
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
