Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F18 I0 R1
|
274 |
115.5 |
2655328 |
86.7% |
2302169 |
226.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
715,338 |
T→A |
11.1% |
intergenic (+140/‑74) |
pgm → / → ybfP |
phosphoglucomutase/lipoprotein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 715,338 | 0 | T | A | 11.1%
| 185.5
/ 3.0
| 76 | intergenic (+140/‑74) | pgm/ybfP | phosphoglucomutase/lipoprotein |
| Reads supporting (aligned to +/- strand): ref base T (37/28); new base A (2/7); total (40/36) |
| Fisher's exact test for biased strand distribution p-value = 7.54e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCAATGAAGACCAACAGGAGTCTGGTCGTCATAGTGTCACTAATTACCGCCACATTACT‑GCTGACTGCATGCGCCCAACCTGAACAATCATCATTAGCTGGCGACTGGTTACTGACCCCTAAAGATAAAACCAGAGGATTAACGGGTAGCATTGCGGT > NC_000913/715100‑715566
|
tataAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGAt > 2:784457/1‑239 (MQ=255)
tataAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGAt > 2:770838/1‑239 (MQ=255)
tataAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGAt > 2:469075/1‑239 (MQ=255)
cTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGAATGAC‑AAACACAGAATTGCCTCATGCGATACGCTTCTCAGGCCTACCAGGATGGGGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGCCgg > 2:925557/1‑237 (MQ=255)
tACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCATTATATTGAATTTAAGCGATTTT‑GTAGGCCGGTTA‑AGGCGTTc > 2:1077503/1‑239 (MQ=255)
tACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATAAGGCCTAGGAGGATGGTGCAAAATATTGAATTTAAACGCTTTT‑GTAGGCCGGATA‑AGGCGTTc > 2:587405/1‑239 (MQ=255)
gCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑cg > 2:1203223/1‑238 (MQ=255)
gCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTAAGAGGATGGGGCAATATATTGAATTTAAGCGATTTT‑GTAAGCCGGAAA‑AAGCGTTAA‑cg > 1:262909/1‑238 (MQ=255)
tCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTAATGCGCTACGCTTATCAGGCCTACGGGGATGGTGCAATATATTGAATTTAAGCGGTTTT‑TTAGGCCGGATA‑AGGGGTTAC‑AGC‑CGCAACCgg > 1:873205/1‑239 (MQ=255)
aagaaCATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAaaca > 2:972791/1‑238 (MQ=255)
aagaaCATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCAACGAGGATGGGGCAAACTATTGAATTTAAGCGATTTT‑GAAGGCCGGAAA‑AGGGGTTAA‑CGC‑CCCAACCGGCaaaaaaaa > 1:202903/1‑239 (MQ=38)
aaCATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGGTA‑AGGCGTTCC‑AGC‑CCCTTCCGGCAAAAACAACGa > 2:32526/1‑239 (MQ=255)
cGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑TTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACt > 2:776751/1‑239 (MQ=255)
cGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACt > 2:766089/1‑239 (MQ=255)
cGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACt > 2:904495/1‑239 (MQ=255)
cGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACAAACACt > 2:100318/1‑239 (MQ=255)
caaaTTGAGAAAGAAGCGGTTGGAATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTca < 2:873205/236‑1 (MQ=255)
atGAAAAAAAAGCGGTTGAAATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTca < 2:262909/234‑1 (MQ=255)
agaaagaaGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTcaacaa > 2:528176/1‑236 (MQ=255)
atgaagCGGTTGGAATTTTTGGGTGAGTTCGGAAAACCGAGA‑AAACACATTTAATAAAAAAAGGGCGGTCGGAAGACCCCCC‑TTTTTTACGTATCAC‑AAACAAAGAAGTGCTTGATGCGCTACGCTTATCAGGCATACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAg < 1:1077503/237‑1 (MQ=25)
aagaggttgTTTAGATTGTTAGCGAATTTCTGAAAACCGCGT‑AAACACATTTAAGAAAAAAAGGGCGTTCGCAAGATCGTCC‑TTGTTTACGTATGAC‑GAACACAGAATTGCCTGTTGCGCTACACTTATCAGGCCTACGAGGATGGTGCAATATATGGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCTGCAAAAACAACGAACACTTTGTCAACAAACTGAg < 1:231351/231‑1 (MQ=37)
aagaagGGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACAAATTTAATAAAAAAAGGGCGGGCGCAAGATCGCCC‑TTTGTTACGTATGAC‑AAACACAGAATTGCCTGAGGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAg < 2:721196/239‑1 (MQ=255)
aagaagCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAg < 2:202903/239‑1 (MQ=255)
aagCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTa > 2:1243461/1‑238 (MQ=255)
aagCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGGTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTa > 2:1272962/1‑238 (MQ=255)
aagCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTGATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGAGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAg < 2:1089835/239‑1 (MQ=255)
aagCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGAAGGGCTACCCTTCTCAGGCCTACGAGTGTGGTGCAAAATCTTGAATTTAAGCGCTTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGCCAAAAAACTGAGAAg > 1:231796/1‑239 (MQ=38)
ggTTGAAATTTTTAGGGAATTTATGAAAACCGCTT‑AAACCCATTTAAAAAAAAAAGGGCTGGCGCAAGATCGTCA‑TTTTTTACGTATTAC‑AAACACAAAATTGCCTTATGCGCTACGTTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTc < 1:972791/238‑1 (MQ=25)
ttgtttagtAGCGATGTTCTGAAAAAC‑CGTGAAACACATTGAATAAAAAAAGGGCGGTCCCAATGTCGCCC‑TTTTTTACGTATGCC‑AAACACAGAATTGCGTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATAGTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGa < 1:775116/231‑1 (MQ=37)
tattttGTTAGGGAAGTTCTAAAAAACGGGT‑AAACAAATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGa < 1:766089/235‑1 (MQ=255)
tAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCaa > 2:433460/1‑239 (MQ=255)
gCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTGTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCAATg < 2:1278592/239‑1 (MQ=255)
gAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAAAACAAAATTGCCTGATGCGCTAGGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTCAGCGCTTTT‑GCAGGCCGGATA‑AGGCGTTAA‑CGC‑CGCATCCGGCAAACACAACGAACCCTTTTTCACAAAACTGAGAAGCTAAAGGAAAACCCaaaaaa > 1:655306/1‑235 (MQ=37)
aaGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAAAACCGAACACTTTGTCAACAAAATGAAAAGCCCAAGGAAAACCAAATaaaa > 1:79903/1‑238 (MQ=37)
aGTTCTAAAAAACCCTT‑AAAACAATTTAAAAAAAAAAGGGCCG‑CTCCAAAGCGCCCGTTTTTCACTGATGAA‑AAACCCAGAATTGCCTGATGGTCTACGCTTATCAGGCCTACGGGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCAATGAAg < 1:382494/238‑1 (MQ=21)
tCTGAAAAACGCGT‑AAACACATTTAAAAAAAAAAGGGCGGTCGAAAGATCGCCC‑TTTTTTACGTATGAA‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCAATGAAGAc < 2:952522/237‑1 (MQ=255)
cTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCAATGAAGACCaa < 2:1206318/239‑1 (MQ=255)
tt‑AAAAACTTTTAATAAAAAAAGGGGGGGTGCAAAGTCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTTGAGCGCTACGCTTAACAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCAATGAAGACCAACAGGAGTCTgg < 1:1243461/238‑1 (MQ=37)
caggtggttataaggagaaggTCGCAAGATCGCCC‑TTTTTTACGAAGGAA‑AAACACGAAATTGCCTGAGCCGCTACGCTTACCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GGAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCAATGAAGACCAACAGGAGTCTGGTCGTCa < 1:1256/219‑1 (MQ=37)
tgtaaagaaaaaaaGGGCGGTCGAAAGATCGGCG‑TTTTTTACGTTGGAC‑AAACACAGAATTGCTTGATGCGCTACGATTATCAGGCTTACGAGGATGGTGCAATATATGGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCAATGAAGACCAACAGGAGTCTGGTCGTCATa < 2:884862/232‑1 (MQ=37)
taaaaaAAAAAGGGCGGTCCAAAGGTCCCCC‑TTTTTTACGTATTGC‑AATCACAGAATTGCCTGATGCGCTACGTTTACCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCAATGAAGACCAACAGGAGTCTGGTCGTCATAgtg < 2:110913/239‑1 (MQ=37)
aaaaaaagGGGGGGGCGCAATGTCGCCT‑TTTTTTACGTATGAC‑AAACAAAGAATTGCATGATGCGTGACGCTTAGCAGGCCTACGAGGATGGTGCAATATATGGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCAATGAAGACCAACAGGAGTCTGGTCGTCATAGTGTCa < 2:370403/238‑1 (MQ=37)
ggtccaaatttCGCTC‑TTTTTTACGTA‑GACAAAAAAAAGAATTTCTTGTGGCTCTACGCTTACCAGCCCTGAGAGGAGGGTGAAATTTTTTGAATTTAAGAGTTTTT‑GGAGCCCGAATA‑AGGCGTCCA‑CGC‑CGCACCCGGCAAAAACAACGAACACTTTGTAAACAAACTGAGTAGCTAAAGAAACTCCCAATGAAGCCAAACAGGAGTGTGGTCGTCATAGTGTCACTAATTACCGc < 1:1166881/228‑1 (MQ=255)
gCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCAATGAAGACCAACAGGAGTCTGGTCGTCATAGTGTCCCt > 2:1256/1‑217 (MQ=255)
ttttCGTTTTAC‑AAACCCAAAATTTCCTTTTGGGCTGCGGTTTTCACGTCTTAGGGGGTGGGGGAATTTATTTAAATTAACGGTTTTTGGAAGGCCGG‑TA‑AGGCTGTCACCGC‑CCCATCCGGCAAAAACAACAAACACTTTCTCAACAACCTGAGTGGCTAAAGGAAATCCCAATGAAGACCAACAGGAGTCTGGTCGTCATAGTTTCCCTAATTACCGCCACATTACT‑GCTGACTGCa < 1:1203223/239‑1 (MQ=255)
ttACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCAATGAAAACCAACAGGAGACTGGTCGTCCTAGGGTCACTAAATACCCCAACAATACT‑GCTGACTGCATg > 1:1222227/1‑239 (MQ=37)
gAC‑AACAACAGAATTGCCTGAGGCGCTACGCTTAGCAGGCCTACGAGGATGGTGCAATTTATTGAATTTAAGCGATTTG‑GTAGGCCGAAAA‑AGGCTTTCA‑CGC‑GGCATCCGGCAAAAACAACGAACACTTTGACAACAAACTGATTAGCTCAAGGAAATCCCAATGAAGACCAACAGGAGTCTGGTCGTCATAGTGTCACTAATTACCGCCACATTACT‑GCTGACTGCATGCGCCCAAc < 2:894352/239‑1 (MQ=255)
acacAGAATTGCTTGATGCGCTACGTTTTACAGGCCAACGAGGAGGGTGCAATATTTGAAATTAAAGGGTTTTT‑GTGGGCCGAATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACCTTTTGTCAACAACCTGAGTAGCTCAAGGAAATCCCAATGAAGACCAACAGGAGTCTGGTCGTCATAGTGTCACTAATTACCGCCACATTACT‑GCTGACTGCATGCGCCCAACCTGaa < 2:79903/239‑1 (MQ=255)
ccTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGATCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCACTGAAGCCCAACAGGAGTCTGGTCGTCATAGTGTCACTAATTACAGCCACATTACT‑GCTGACTCCATGCGCCCAACCTGAACAATCATCAtt > 2:881699/1‑239 (MQ=255)
ccTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGACA‑AGGCGTTCA‑CGC‑CGCATCCGGCACAAACAACGAACCCTTTGTCAACAAACTGAGCAGCCCAAGGAAACACCAATGAAACCCACCAGCAGCATGGCCGCCATCGGGTCAGTAATTACCCCCACATTAAT‑GCTGACTGCATCCGCCCAACCTGAACACTCATAAtt > 1:846413/1‑239 (MQ=25)
tGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTTA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCAATGAAGACCAACAGGAGTCTGGTCGTCATAGGGTCACTAATTACCGCCACATTAct‑gct > 2:504515/1‑201 (MQ=255)
cgcTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑cg < 2:813322/79‑1 (MQ=255)
cgcTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑cg > 1:813322/1‑79 (MQ=255)
aTCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGCTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGGGTAGCTCAAGGAAATCCCAATGCAGACCAACAGGAGTCTGGTCGTCATAGTGTCACTAATTACCGCCACATTACTGGCGCGCTG‑ATGCCCCCAACTTGAACAAtcctcacaacaagcagtcgggtaaa > 1:468955/1‑220 (MQ=255)
tggataaagggaaggttgaaaTAAATTGATTTTAAG‑GATTTT‑TGAGGGCGGGGATAGGCGTCCG‑CCA‑CGCTACCGGAAAAAAAAAACAAAAATTTTGCAACAAACTGAGTAGATAAAGGAACTCCCAATTAAGACCAACATGAGTGTGGCCGTCATGGTGTCCATAATTACCGCCACATTACT‑GCTGACTGCATGCGCCCAACCTGAACAATCATCATTAGCTGGCGACTGGTTACTGa < 1:107924/220‑1 (MQ=255)
gCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCAATGAAGACCAACAGGAGTCTGGTCGTCATAGTGTCACTAATTACCGCCACATTAct‑g > 2:925020/1‑182 (MQ=255)
tacaagaaagttttatcatatTGAGTTTAGAGTATTTG‑GTGGGCGGGATA‑GGGGGTAGA‑CTC‑CGAGTCCGGAAAAAAAAACGAACCCTTTGACAACAACCTGGGTAGTCTAGGGAACTCCCAATGAAAAACCAGAGGGGTTTGGACGTCAACGTGTCACAAATTGCCGCCACATTACT‑GCTGACTGCATGCGCCCAACCTGAACAATCATCATTAGCTGGCGACTGGTTACTGTCCCCt < 1:466951/222‑1 (MQ=255)
tACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAac < 1:1067734/85‑1 (MQ=255)
tACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAac > 2:1067734/1‑85 (MQ=255)
cGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCAATGAAGACCAACAGGAGTCTGGTCGTCATAATGTCACTAATTACCCCCACATTACT‑GAGGACTGCATGCGCCCAACCCGAAAAATAATCATTACCTCGCCACTGGTTATTGACCCCTaa > 1:146080/1‑239 (MQ=38)
tGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCAATGAAGACCAACAGGAGTCTGGTCGTCATAGTTTCACTAATTACCGCCACATTACT‑GCTGACTGCATGCGCCCAACCTGAACAATCATCATTAGCTGGCGACTGGTTACTGCCCCCTAAAGATaa > 2:959282/1‑239 (MQ=255)
ttattggAATTTAAGCATTTTT‑GGAGCCGGGAAA‑AGGGTTCCA‑CGC‑CGCACCCGGCAAAAACAACGAACCTTTTGTCAACAAACTGAGTAGCTAAAGGAAATCCCAATGAAGCCCAACAGGAGTCTGGTCGTCATAGTGTCATTAATTACCGCCACATTACT‑GCTGACTGCATGCGCCCAACCTGAACAATCATCATTAGCTGGCGACTGGTTACTGACCCCTAAAGATAAAACCagag < 2:231796/233‑1 (MQ=255)
tGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGCGTAGCTCAAGGAAATCCCAATGAAGACCAACAGGAGTCTGGTCGTCATAGTGTCACTAATTACCGCCACATTACT‑GCTGACTGCATGCGCCCAACCTGAACAATCACCATTAGCTGGCGACTGGTTACTGACCCCTAAAGAtctgcctcttataacc > 2:107924/1‑224 (MQ=255)
tGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAGGGAAATCCAAATGAAACTCAACAGAAGTCTGGCCGTCATAATGTCACTAATTACCCCAACATTACG‑GATAACTGCATGCGCCCAACCTGAACAATCATCAATAGCTAGCGAATGGCTAATGACCCCAAAAGaaaaaaaaaaagaataa > 1:631881/1‑228 (MQ=255)
tGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCAATGAAGACCAACAGGAGTCTGGTCGTCATAGTGTCACTAATTACCGCCACATTACT‑GCTGACTGCATGCGCCCAACCTGAACAATCATCATTAGCTGGCGACTGGTTCCTGACCCCTAAAGATAAAACCAGAGGATTa > 2:246146/1‑239 (MQ=255)
tGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCAATGAAGACCAACAGGAGTCTGGTCGTCATAGTGTCACTAATTACCGCCACATTACT‑GCTGACTGCATGCGCCCAACCTGAACAATCATCATTAGCTGGCGACTGGTTACTGACCCCTAAAGATAAAACCAGAGGATTa > 2:1164908/1‑239 (MQ=255)
tGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCAATGAAGACCAACAGGAGTCTGGTCGTCATAGTGTAACTAATTACCGCCACATTACT‑GCTGACTGCATGCGCCCAACCTGAACAATCATCATTAGCTGGCGACTGGTTACTGACCCCTAAAGATaaca > 2:466951/1‑226 (MQ=255)
tGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCAATGAAGACCAACAGGAGGCTGGTCGGCATAGTGTCACTAATTACCGCCACATTACT‑GCTGACTGAATGCGCCCAACCTGAACAATCATCATTAGCTGGCGACTGGTTACTGACCCCTAAAGATAAAACCAGAGGATTa > 2:43607/1‑239 (MQ=255)
tGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCAATGAAGACCAACAGGAGCCTGGTCGTCATAGTGTCACTAATTACCGCCACATTACT‑GCTGACTGCATGCGCCCAACCTGAACAATCATCATTAGCTGGCGACTGGTTACTGACCCCTAAAGATAAAACCAGAGGATTa > 2:32403/1‑239 (MQ=255)
aaTTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCAATGAAGACCAACACGAGTCTGGTCGTCCTAGAGTCACTAATTACCGCCACATTCCT‑GCTGACTGCATGCGCCCAACCTGAACAATCATCATTAGCTGGCGACTGGTTACTGGCCCCTAAAGAAAAAAcaaagggagaaac > 1:881067/1‑227 (MQ=255)
taaaGCGTTTTT‑GGAGGCCGGAAA‑AGGCTTCCA‑CGC‑CGCAACCGGAAAAAACAACGAACCCTTTGTCAACAAACTGAGTAGCTAAAGGAAACCCCAATGAAGCCAAACAGGAGTCTGGTCGTCATAGTGTCACTAATTACCGCCACATTACT‑GCTGACTGCATGCGCCCAACCTGAACAATCATCATTAGCTGGCGACTGGTTACTGACCCCTAAAGATAAAACCAGAGGATTAACggg < 2:1222227/237‑1 (MQ=255)
gttttg‑GTAGGCCGTATA‑GGGCTGCCA‑CGC‑CGCATCCGGAAAAAACAACGAACCTTTTGTCAACAAACGGAGTAGCTAAAGGAAATCCCAATGAAGCCCAACAGGATGCTGGTCGTCATAGTGTCACTAATTACCGCCACATTACT‑GCTGACTGCATGCGCCCAACCTGAACAATCATCATTAGCTGGCGACTGGTTACTGACCCCTAAAGATAAAACCAGAGGATTAACGGGTAGCa < 2:354621/236‑1 (MQ=255)
gggtaaaagagacaggAAA‑AGGCGTCCC‑CGC‑CGCACCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAACCCCAATGAAGACCAACAGGAGTCTGGTCGTCATAGTGTCACTAATTACCGCCACATTACT‑GCTGACTGCATGCGCCCAACCTGAACAATCATCATTAGCTGGCGACTGGTTACTGACCCCTAAAGATAAAACCAGAGGATTAACGGGTAGCa < 2:48964/225‑1 (MQ=255)
gATTTG‑GTAGGCCGAATA‑AGGCGTTCC‑CGC‑CGCATCCGGAAAAAACAACGAACCTTTTGTAAACAAACGGAGTAGCTCAAGGAAATCCCAAGGAAGACCAACAGGAGTCTGGTCGTAATAGTGTCACTAATTACCGCCACATTACT‑GCTGACTGCATGCGCCCAACCTGAACAATCATCATTAGCTGGCGACTGGTTACTGACCCCTAAAGATAAAACCAGAGGATTAACGGGTAGCa < 2:591775/238‑1 (MQ=255)
aattgttaaGGCTGGAAA‑AGGGTTTCC‑CGC‑CCCATGCGGACAAAACAACGAAATTTTTGACAAAAAACGGAGTAGCTCAGGGAAATCCCAATGACCACCAACAGGAGTCTGGTCGTTAAAGTGTCACTAATTCCCGCCACATTACT‑GCTGACTGCATGCGCCCAACCTGAACAATCATCATTAGCTGGCGACTGGTTACTGACCCCTAAAGATAAAACCAGAGGATTAACGGGTAGCa < 2:727406/230‑1 (MQ=255)
aTTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCAATGAAGACCAACAGGAGTCTGGTCGTCATAGTGTCACTAATTACCGCCACATTACT‑GCTGACTGCATGCGCCCAACCTGAACAATCATCATTAGCTGGCGACTGGTTACTGACCCCTAAAGATAAAACCAAAGGATTACCGGGTAGCAtt > 2:1012880/1‑239 (MQ=255)
ttttttgcggtcGGATA‑GGGGGTTC‑‑CGCGCGCAACGGGAAAAACAAACGAACAATGTTGCAACAAACGGGATAGCTAGAAGAAACCCAAGGGAAAACCAGAGGGAGTCTGGTCGTCATAGGATCACAAATAACCGCCACATTACT‑GCTGACTGCATGCGCCCAACATGAACAATCATCATTAGCTGGCGACTGGTTACTGACCCCTAAAGATAAAACCAGAGGATTAACGGGTAGCAtt < 1:194085/228‑1 (MQ=255)
gTAGGCCGGAAA‑GGGCTTTCA‑CCC‑CGACTCCGGCAAAAACAACGAACCCTTTGTCAACAAACTGAGTAGCACAAGGAAACCCCAATGAAGACCAACAGGAGTCTGGTCGTCATAGTTTCCCTAATTACCGCCACATTACT‑GCTGACTGCATGCGCCCAACCTGAACAATCATCATTAGCTGGCGACTGGTTACTGACCCCTAAAGATAAAACCAGAGGATTAACGGGTAGCATTGCGGt < 2:1102400/239‑1 (MQ=255)
gTAGGCCGGAAA‑AGGTCTCCA‑CGC‑CGCATCCGGAAAAAAAAACGAACCTTTTGTAAACAAGCGAAGTAGCTAAAGGAAATCCCAATGAAGACCAACAGGAGTTTGGGCTTCATAGTTTCACTAATTACCGCCACATTACT‑GCTGACTGCATGCGCCCAACCTGAACAATCATCATTAGCTGGCGACTGGTTACTGACCCCTAAAGATAAAACCAGAGGATTAACGGGTAGCATTGCGGt < 2:655306/239‑1 (MQ=255)
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TATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGT‑AAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCC‑TTTTTTACGTATGAC‑AAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTT‑GTAGGCCGGATA‑AGGCGTTCA‑CGC‑CGCATCCGGCAAAAACAACGAACACTTTGTCAACAAACTGAGTAGCTCAAGGAAATCCCAATGAAGACCAACAGGAGTCTGGTCGTCATAGTGTCACTAATTACCGCCACATTACT‑GCTGACTGCATGCGCCCAACCTGAACAATCATCATTAGCTGGCGACTGGTTACTGACCCCTAAAGATAAAACCAGAGGATTAACGGGTAGCATTGCGGT > NC_000913/715100‑715566
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
