Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F18 I0 R1
|
274 |
115.5 |
2655328 |
86.7% |
2302169 |
226.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,074,021 |
A→C |
13.3% |
Y828S (TAC→TCC) |
flu → |
CP4‑44 prophage, antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,074,021 | 0 | A | C | 13.3%
| 169.8
/ 3.3
| 66 | Y828S (TAC→TCC) | flu | CP4‑44 prophage, antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| Reads supporting (aligned to +/- strand): ref base A (47/8); new base C (3/8); total (50/16) |
| Fisher's exact test for biased strand distribution p-value = 2.48e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTCATCTCGGTCACGATAACAATGGCGGTATTGCCCGTGGGGCCACGCCGGAAAGCAGCGGCAGCTATGGATTCGTCCGTCTGGAGGGTGACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCAC‑TGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCA‑CAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTA > NC_000913/2073790‑2074258
|
gtcccgtcGGTCCCGTTAAAAATGGGGGTTTTGCCCGTGGGGCCCGGCCGGAAAGCAGCGGCAGGTAGGGATTCGTCCGTCTGGAGGGTGACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAAt < 1:607726/233‑1 (MQ=255)
gcctccgcgTCACGATAACCATGGCGGTATTGCCCGTGGGGCCAGGCCGAAAAGGAGCGGCAGGTATGGCTTGGTCCGTCGGGAGGGTGACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGGCCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAAt < 1:261346/230‑1 (MQ=255)
cACGATAACAATGGCGGTATTGCCCGTGGGGCCACGCCGGAAAGCAGCGGCAGCTATGGATTCGTCCGTCTGGAGGGTGACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGGATATGGTGCTGCTGGCCATTCTTCCGTTTATGTTAAGGATGATGACGGCTCCCGTGCCGGCCCGGGCCGGGGTGATGCCGGCAGCCTGGGC‑GGGACCCTGAAACTGGTaccac > 2:1216709/1‑235 (MQ=255)
aCAATGGCGGTATTGCCCGTGGGGCAACGCCGGAAAGCAGCGGCAGCTATGGATTCGTCCGTCTGGAGGGTGACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGtcctcc < 2:1150821/239‑1 (MQ=255)
gggggttgtGCCCGGGTGGCCACGCCGGAAAGCAGCGTGAGCTATGGATTCGTCCGTCGTGAGGGTGACCTGATGAGCACAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATTACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCt < 2:1229799/231‑1 (MQ=255)
tATTGCCCGTGGGGCCACGCCGGAAAGCAGCGGCAGCTATGGATTCGTCCGTCTGGAGGGTGACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTgg < 2:430521/238‑1 (MQ=255)
gCCCGGGGGGCCACGCCGGAAAGCGGCAGCAGCTATGGATTCGTCCGTCTGGAGGGTGACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGa < 2:614428/239‑1 (MQ=255)
tGGGGCCACGCCGGAAAGCAGCGGCAGCTATGGATTCGTCCGTCTGGAGGGTGACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGACCACACGTCCTCCGGCCTGTGGGCTGACATtg > 2:466273/1‑239 (MQ=255)
gAAAGCAGCGGCAGCTATGGATTCGTCCGTCTGGAGGGTGACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCCCAGGGaa > 2:362717/1‑238 (MQ=255)
gtccgtcTGGAGGGTGACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGCCATTTTGGCCCAGGGAACCCGCCCCAG‑CATGA‑AAGCGTAATc > 2:253200/1‑239 (MQ=255)
gtccgtcTGGAGGGTGACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAACGCCATc > 2:1151513/1‑239 (MQ=255)
gtccgtcTGGAGGGTGACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGGGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCacc > 2:1297291/1‑237 (MQ=255)
gtccgtcTGGAGGGTGACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCATCCGGCCTGTGGGCGGACATTGTGGCACAGGGAACCCGCCCCAG‑CATGA‑ACGCGGCATc > 2:750738/1‑239 (MQ=255)
gggTGACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACCCGTCCTCCGGCCTTTGGGCTGACCTGGTGGCACCGGAAACCCGCCACAG‑CATGA‑AAACGTCACCGGACAATAACg > 2:1246747/1‑239 (MQ=255)
tGACCTGATGCGTACAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGCTGATGACGGCTCCCGTGCCGGCTCGGTCCGGCATGATGCCGGCAGCCTGTGC‑GGCTCCCTGAATCTGGTCCACGAGTCCTCCGGTCGGCGGGTCGGCATTCAGGCACCGGGGAACCGCCCCCG‑CCTGA‑AAGCGGCCTCgcaaaaaaaaaca > 1:1100817/1‑226 (MQ=255)
tGACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGAGGATGACGGCTCCCGTGCCGGCACGGGCCGGCGTTATGACGGCAGACTGGGC‑GGCTACCTGAATCGGGAACACACATCCTCCGGCCTGCAGGCTGACCTTGTGGCACAGGGCCCCCCCCCCCC‑CATGA‑AAGCAGCCTCGGACAATAACGaa > 1:942765/1‑237 (MQ=255)
tgaGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTcccggc > 2:1096356/1‑234 (MQ=255)
agGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGGTGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCGGAATCTGGAACACACGTCCTCCGGCCTGGGGGGTGCCATTGTGGCACAGGGAACCCGCCCACG‑AATGA‑AAGAGTCATCGGACAAAAACAAATTCCCCGCCCggggcggg > 1:1099792/1‑239 (MQ=255)
agGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCGGACATTGTGGCACAGGGAACCCGCCACAG‑CATGa > 2:1011254/1‑198 (MQ=255)
gCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGCACTCGGACCATAACGACTTCCGCGCCCGgggctggggctg > 2:1217050/1‑239 (MQ=255)
tgtgACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCCGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGGACACACGTCCTCCGGCCTGCGGGCCGACATTGTGGCCCACGGAACCCGCCACCG‑CCGGC‑AAACGGCATCGGACCATAACGAACTCCCCGCCCggggcccggaccggtcgggccgac > 1:1056089/1‑220 (MQ=255)
cgGGGGTATATGGTGTTGCTGGCCATTCTTCCGTTGATGGTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGCATCTGGTCCCCACGCCATCCGGCCTGTGGGCTGACCTTTTGGCACAGGGAAACCGCCACA‑‑CACGACAAGCGGAATCGGCCAATACCGCCATCCGCGCCCcgggctggtgcgtcctggcgccgcctgaaaa > 1:1199810/1‑218 (MQ=255)
cgGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGa > 2:296502/1‑108 (MQ=255)
cgGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGa < 1:296502/108‑1 (MQ=255)
cgGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCCCGCCCGGGGCTGGGGCTGGCTGGGGTCAC‑TGGAAAcc > 2:519149/1‑239 (MQ=255)
ggggTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCCCAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCAC‑TGGAAACCg > 2:857574/1‑238 (MQ=255)
gactgctgGCCAGTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGTAAGCCTGGGC‑TGTTCACTGAATCTGGTACCCCCGTCCTCCGGCCTGTAGCGTGGCCTTGGTGCCCAAGGAACCC‑CCACCGTCCTGA‑CAGCGTCATTGGACAATACCGACTTCCGCCACCGGGGCTGGGCCGTCCTGGGCCCAC‑tcaaaaagagaccgccctgca > 1:886275/3‑219 (MQ=255)
ctgctgGCCATTCTTCCGTTGCTGTTAAGGATGCTGACGGCTCCCGTGCAGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGCTACCTGATTCTGGTACTCCCGTCTTCCGGCCTGGGGGCTGACATTGTGTCACCGGAAAACCGCCACCG‑CATGT‑CAGGTCCATTGGCCACTACAGCCTTCCGCGCCCGGGGCTGGGCCGGGCCGGGCACACGTGGaacaccatacacctcccga > 1:200571/1‑222 (MQ=255)
ctgctgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGc > 2:965833/1‑124 (MQ=255)
ctgctgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCAC‑TGGGAACCGGGCTGCCCTTCAGt > 2:744703/1‑239 (MQ=255)
ctgctgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCAC‑TGGAAACCGGTCTGCCCTTCAGt > 2:61627/1‑239 (MQ=255)
ctgctgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCGCCCGTGCCGGAACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAGTCTGGCACACACGGCCTACGGACTGGGGGCTGCCATTGGGGCACAGGGAACCCGCCACAC‑CCTTA‑ACAGGCCATCGGACAATAGCGACTTCCGAGCCCTGGGCCGGGGCAGGCCGGGGGCCG‑TGGAAACCGGGCGGCCCtgtagg > 1:1325429/1‑234 (MQ=255)
ctgctgGCCAGTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGc < 1:965833/124‑1 (MQ=255)
ctgctgGCAATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCCCAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGGCAATAACGACTTCCGAGACCGGGGCTGGGGCTGGCTGGGCTCAC‑TGGAAAccctgtctcttataac > 2:321834/1‑224 (MQ=255)
ctgGCCATTCTTCCGTTGATGTTAAGGATGCTGACGGCTCCCGTGCCGGCACGGTACGGGATGATTCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGCAATTGTGGCACAGTGGAACTGCCACAG‑AATCA‑AACCGTGAACGGACAATACCGAATTCCCCGCCCGCGGCCCGGGCTGCGCGGGCTCCC‑TTGAAAcccatcgccccctcagaaca > 1:1280926/1‑221 (MQ=255)
ctgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACCGGGAACCCGCCCCAG‑CCTGA‑AAGCGGCACCGGCCAATAACAACTTCCCCGCCCGGGGCCGGGGCGGGCCGGGCCCAC‑TGAAAACCggccctccccccagagt > 1:1152584/1‑223 (MQ=255)
ctgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CCTGA‑AAGCGTCATCGGCCAATAACGACTTCCGCGCCCCGGCCTGGGGCGGGCTGGGCTCAC‑TGGAAACCGGTCTGCCCTCCAGGAt > 1:894823/1‑238 (MQ=255)
ctgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGCCAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCCCAC‑TGGAAACCGGTTTGCCCTTCAGTAt > 2:568496/1‑238 (MQ=255)
ctgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCCCGCCCGGGGCTGGGGCTGGCTGGGCTCAC‑TGGAAACCGGTCTGCCCTTCAgatc > 2:476563/1‑235 (MQ=255)
ctgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGGCATCGGACCATAACGACTTCCGCGCCCGGGGCTGGGCCTGGCTGGGCCCAC‑TGGAAACCGGTCTGCCCTTCAGTATc > 2:566596/1‑239 (MQ=255)
gCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGGCATTTTGGCACAGGGAACCCGCCACAG‑CCTGA‑AAGCGTCCTCGGACCATAACGACTTCCGCCCCCGGGGCTGGGCATGCCTGGGCTCAC‑TGGAACCCGGTCGCCCCTTccggtcaacc > 1:967356/1‑230 (MQ=255)
cATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCGGGCATTTGGGCACAGGGAACCCGCCACAG‑CATGA‑AACCGGCATCGGACAATACCGCCTTCCACGCCCGGGGCTGGGGCTGGCTGGGCCCCC‑CGGAAACCGGTCTGcccccaaggacacctga > 1:35425/1‑225 (MQ=255)
gtggatggggccccccggcccGGCGCGGTCGGGGAGGGCGCCGGCAGCGGGGGC‑GGATCCATGAATCTGGTACACACGTCCCCGGGCTTGTGGGATGACATTGTGCCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCAC‑TGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCca‑c < 2:1099792/219‑1 (MQ=255)
gatgaCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCAC‑GGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATCCTTGAGCCC‑CAAcg > 2:920844/1‑238 (MQ=255)
atgaCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGCCTGGCTGGGCTCAC‑TGGAAACCGGTCTGCCCTTCAGTATCACTGCCAACCTGATGCTGGAGCCA‑CAACTg > 2:183881/1‑239 (MQ=255)
tgaCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCCGGGGCTGGCTGGGCTCAC‑TGGAAACCGTGCTGCCCTTCAGAATCACTGACAACCTGATACTGGAGCCA‑CAACCGc > 1:1157307/1‑239 (MQ=255)
ggggCTCCCGGGCCGGCCGGGTGCGGGATGATGGCGGCACGCGGGGC‑GGATCCCGGAACCTGGTCCACCGTTCCCCGGGCGGGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCAC‑TGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCA‑CAACTGCa < 2:481866/236‑1 (MQ=255)
cTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACCCACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCAC‑TGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCC‑CAACTGAGGtat > 2:1084984/1‑238 (MQ=255)
ccccGTGCCGGCACGGTCCGGGATGAGGCCGGCAGCCGGGGG‑GGATCCCTGAATCTGGTACACCCGTCCCCCGGCCTGTGGGCTGACTTGGGGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCAC‑TGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCA‑CAACTGCAGTATAc < 2:1152584/238‑1 (MQ=255)
gccggccgGGTCGGGGATGATGCCGGCACCCTGGGC‑GAATCCCTGAATCTGGACCCCACGCCCGCGGTCTTGGGGGTTAAAATGGGGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCAC‑TGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCA‑CAACTGCAGTATACCTGGc < 2:35425/238‑1 (MQ=255)
gCCGGCACGGGCGGGAATGGGGCCGACAG‑CTGGGCGGGATCCCTGATCCGTGTACACAGGTCCCCCGGCTTGGGGGCTGACATTGTGGCACAGGGACCCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCAC‑TGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCA‑CAACTGCAGTATACCTGGc < 2:843427/238‑1 (MQ=255)
gCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCAC‑TGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCA‑CAACTCCCGTATACCTGGCAggg > 2:427716/1‑238 (MQ=255)
gatgatGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCAC‑TGGAAACCGGCCTGCCCTTCGGTATCACTGGCAACCTGATGCCGGAGCAC‑CAACTGCGGGATACCTGGCAGGGGCTTTCCCTGGa > 1:768202/1‑239 (MQ=255)
aggaggCCGGGACCCGGGGC‑GAATCCCGGAACCGGGAACAACCGTCCTAGGGCCTGTGGTGTGACTTGGGGGCAGGGGGACCCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCAC‑TGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCA‑CAACTGCAGTATACCTGGCAGGGACTTTCCCTGGa < 2:138118/233‑1 (MQ=255)
atgCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCAC‑TGGAAACCGGTCTGCCCTTCCGTATCCCTGACAACCTGATGCTGGAGCCA‑CAACTCCAGGTAACCTGGCAGGGCCTTTCCCCGGGTGag > 1:1251795/1‑238 (MQ=255)
tgCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCCC‑TGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCCGATGCTGGAGCCA‑CAACTGCAGTATACCTGCCAGGGACTTTCCCTGGATGACg > 2:549897/1‑239 (MQ=255)
tgCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCAC‑TGGAAACCGGTCTGCCCTTCAGTATCCCGGACAACCTGATGCTGGAGCCA‑CAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACg > 2:996829/1‑239 (MQ=255)
tgCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCAC‑TGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCA‑CAACTGCAGtata > 2:717872/1‑212 (MQ=255)
tgCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCGGGGCTCAC‑TGAAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCA‑CAACTGCCGTATACCTGGCAAGGACTTACCCAgggggagg > 1:1200173/1‑233 (MQ=255)
tgCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTACCGCGCCCGGGGCTGGGGCTGGCTGGGCTCAC‑TGGAAACCGGTGTGCCCTTCAGTCTCCCTGGCAACCTGCTGCTCGGGCGC‑CAAACGCAGGAGACCTGGCCGGGACGTTCCCCGGATGACg > 1:115343/1‑239 (MQ=255)
tgCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCACCCCAG‑CATGA‑AAGCGTCATCGGAAAATAACGACTTCCGCGCCCGGGGCTCGGACTGGCTGGGCCCAC‑TGGCAACCGGTCTGACCTTCCGGATTCCTGACAACCTGATGCCGACGGCC‑CCACGCCAAGATACCTGGCCGGGCCTTTACCTgtgggcgg > 1:89628/1‑232 (MQ=255)
tgCCGGCAGCCGGGGC‑GGATACCTGAATCGGGTCCACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCGGGGGCTGGCGGGGCTCAC‑TGGAACACGGTCTGCCCTTCAGTATACCTGCCAACCTGATGCTGG‑GCCACCCACGCCACTATACCTGCCAGGCGCTTTCCCCGGATGaag > 1:933513/1‑237 (MQ=255)
gCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCGGGCTGGGCTCAC‑TGGAAACAGGTCTGCCCTTCAGTATCAATGCCAACCTGTTGCTGGAGCCA‑CAACTCCCGAATACCGTGCAGGGGACTTCCCCGGATGAAGGAAAg > 1:297838/1‑239 (MQ=255)
gggg‑ggATCCCTAAACTTGGTACCCCCGTCCCCGGGCCTGGGGGCTGACTTGGGGGCACAGGAACCCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCAC‑TGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCA‑CAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAAc < 2:1251795/238‑1 (MQ=255)
gC‑GGATCCCGTAATTTGGTACACCCGCCGTCGGGCTGGGGGGGTGACTTGGTGGCACGGGGACCCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCAC‑TGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCA‑CAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGc < 2:942765/238‑1 (MQ=255)
tACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCAC‑TGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCA‑CAACTGCAGTATACCTGGCAGGGACTTTCCCTGGCGGAGGGAAAGGACAAAACCGGGTa > 1:1196786/1‑239 (MQ=255)
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GTCATCTCGGTCACGATAACAATGGCGGTATTGCCCGTGGGGCCACGCCGGAAAGCAGCGGCAGCTATGGATTCGTCCGTCTGGAGGGTGACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGC‑GGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAG‑CATGA‑AAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCAC‑TGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCA‑CAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTA > NC_000913/2073790‑2074258
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
