Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F18 I0 R1 274 115.5 2655328 86.7% 2302169 226.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,499,607 A→C 17.1% A54A (GCA→GCC)  yhfL → small lipoprotein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,499,6070AC17.1% 86.5 / 2.3 58A54A (GCA→GCC) yhfLsmall lipoprotein
Reads supporting (aligned to +/- strand):  ref base A (14/33);  new base C (8/3);  total (22/36)
Fisher's exact test for biased strand distribution p-value = 1.41e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TTAACGAGCAGTCTGCTTATATTCATATAATCAATGAATATTAATTAATATATAATACATAGGGAATGTAAATGAACAAATTTATTAAAGTTGCACTGGTAGGTGCAGTACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATATGTTGTTATATTCATCATGCATTG  >  NC_000913/3499375‑3499840
                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                     
ttAACGAGCAGTCTGCTTATATTCATATAATCAATGAATATTAATTAATATATAATACATAGGGAATGTAAATGAACAAATTTATTAAAGTTGCACTGGTAGGTGCAGTACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTaa                                                                                                                                                                                                                                                 <  2:387812/239‑1 (MQ=255)
                                                        aCATAGGGAATGTAAATGAACAAATTTATTAAAGTTGCACTGGTAGGTGCAGTACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTg                                                                                                                                                                                         <  2:506941/233‑1 (MQ=255)
                                                            aGGGAATGTAAATGAACAAATTTATTAAAGTTGCACTGGTAGGTGCAGTACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTTCGGGCCTAATGCACCAGAAATCTCTGAACG‑CACACGGCCAAC‑C‑CCCGTTTAT‑TTT‑CCC‑gcacccccccggtgttttccc                                                                                                                                                                               >  2:313193/1‑219 (MQ=255)
                                                              ggAATGTAAATGAACAAATTTATTAAAGTTGCACTGGTAGGTGCAGTACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTTCGGGCCTACTGTACAGTAAAACTCTTACAG‑AAAAAGGGTAAA‑A‑CCGGGTTAA‑TTT‑TCC‑GCGGCCCTCCGGATTTTT‑CGCgg                                                                                                                                                                            >  2:125505/1‑239 (MQ=255)
                                                              ggAATGTAAATGAACAAATTTATTAAAGTTGCACTGGTAGGTGCAGTACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCCACTGCCCCGTAAATCTTCGACAG‑CAATAGGCTAAC‑ACCCGGTTTAT‑TTT‑CCC‑‑ACGCCCTCCGGGtttttcccgg                                                                                                                                                                             >  2:997310/1‑233 (MQ=255)
                                                                  tGTAAATGAACAAATTTATTAAAGTTGCACTGGTAGGTGCAGTACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGACTCTCACAG‑AAATAGGCTAAC‑A‑CCGGGTTTA‑TTT‑TCC‑GACGCCCTCTGGGTTTTT‑CCAGGGCgg                                                                                                                                                                        >  2:1250713/1‑238 (MQ=255)
                                                                  tGTAAATGAACAAATTTATTAAAGTTGCACTGGTAGGTGCAGTACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGGCCTACTGCACAGTAAAGCTCCGACAG‑AAAATGGCTAAC‑A‑CCGGGTTAA‑TTGTACC‑GA‑GCCCCCTGGAGTTTT‑CGCgggggg                                                                                                                                                                        >  2:17297/1‑236 (MQ=255)
                                                                                               gtgtgggttttgtaaagagacaagTTAAATGTATTTACGGGTCATATTGAAAACCGTAATAAGAACTGCTCTTACGACTACCGGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCcccgc                                                                                                                                       <  1:847671/216‑1 (MQ=255)
                                                                                                  gTAGGTGCAGTACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGGTGCGGGCCTACTGCACACAAAATCTCTTACCG‑AAAACGGCTAAC‑A‑CCCGTTTAT‑ATT‑TCC‑GCCACCCTCTGGGTTTTT‑CCCGTGCGCG‑TTTTTTTCTCTGTGCTTC‑TTT‑‑Ccccccccc                                                                                                                                     >  2:1269312/1‑238 (MQ=255)
                                                                                                       tGCAGTACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTTCGGTCCCACTGCCCAAAAAATCTCTTACAGAAAATCGG‑TCAC‑A‑CCCGGTTTA‑TTG‑CCC‑CCCGCCCCCCTGAATTTC‑CGAGGGCGGC‑TTTTTTTCTTTGTCCCTC‑TTT‑‑Ccccccccccccaaa                                                                                                                               >  2:498428/1‑233 (MQ=255)
                                                                                                       tGCAGTACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTTCGGGCCTCCTGCCCAGTAAGTCTCTGACAG‑AAAACGGCTAAC‑A‑CCCGTTTTA‑TTT‑CCC‑CGCGCCCCCCGGAGTTTT‑CCAGGGCGGC‑TTTGTTTCTTTTTCATTC‑TTT‑‑CCcccgcccctccaa                                                                                                                               >  2:849878/1‑233 (MQ=255)
                                                                                                            tACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTTCGGTCCTACTGCACCGTAAGTCTCTGAAAG‑AAAAACGCCAAC‑A‑CCCGATTTA‑TTT‑CCC‑CACGCCCTCTGGGTTTTT‑CTCGGGCGGA‑TTTGTTTTTTTTTTCTTC‑TTA‑‑CCCCCCCCCGTCAAAAAAtt                                                                                                                          >  2:928065/1‑239 (MQ=255)
                                                                                                            tACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGTGGTGCCGCTGCACAATAAATATCTGACAT‑AAACTGGCTAAC‑C‑CCGTTGTTA‑TTT‑ACC‑GACGCCCCCTGGATGTTT‑CGTGGGGGGA‑TTTGTTTTTTTGTCCTTC‑TTG‑‑Ccccccccctccaaaaaatt                                                                                                                          >  2:249099/1‑228 (MQ=255)
                                                                                                            tACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGGCCTACTTCACCATAAAACTCTGACAG‑AAATAGGCTAAC‑A‑CCCGGTTAA‑TTT‑CCC‑GCCGCCCCCTGGGTTTTT‑CTAGGGCGGA‑TTTGTTTTTTTGTCCTTCTTTG‑‑CCCCCCCCCCCaaaaaatt                                                                                                                           >  2:998356/1‑236 (MQ=255)
                                                                                                            tACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGGCCTACTTCACAGTCAGTCTCTGTCAG‑AAATAGGCTAAC‑A‑CCCGGTTTA‑TTT‑CCC‑GACGCCCCCTGTGGTTTT‑CTACGGCGGA‑TTTTTTTTTATGTCCTTT‑TTT‑‑Ccccccccccccaaaaaatt                                                                                                                          >  2:1250570/1‑228 (MQ=255)
                                                                                                            tACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCCGGCCCACAGCCCCATAAATTTCTGACAG‑AAATACGCTAAA‑A‑CCCGGTTTA‑TTT‑CCC‑GGCTCCCCCTGTGCTTTC‑CCCGAGTGCA‑TGTGTTTTTATGTCCCTC‑CTGTCCCCCCCCCCGCAAAAatt                                                                                                                            >  2:1184080/1‑238 (MQ=255)
                                                                                                                 gCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTTCGGGCCTACTGCCCACTCAGTCTTTTGCAG‑AAAATCGCTTAC‑A‑CCCGTTTTA‑TTT‑CCCGGCCCCCCCCTGGTTTTTC‑TGAGGGGGAT‑TTTTTTTTTTTTCCCTTT‑TTC‑‑CCcccccccgaccacatttttt                                                                                                                        >  2:669330/1‑225 (MQ=255)
                                                                                                                 gCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTCCCTCACAATAAATCTCTCACCG‑AAAACGGGTCAC‑A‑CCCGGTTAC‑TTT‑GCC‑CCCGCCCTCTCGAGTTTC‑CGAGGGCGTA‑TTTGTTTTTATTTCCTTCTTTG‑‑CCCCCCCCCTCAAAAAAAtttc                                                                                                                        >  2:52323/1‑236 (MQ=255)
                                                                                                                 gCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGGCCTACTTCACCGTAAGTCTCTGACAG‑AAATCGGCTAAA‑C‑ACGGTTTAA‑TTT‑TCC‑GCCGCCCCCTCGGTTTTC‑CGAAGGCGGA‑TTTTTTTCTTTGTCCTTC‑TTG‑‑TCCCCGCCCCCTAAAAAAttttt                                                                                                                       >  2:211629/1‑236 (MQ=255)
                                                                                                                      gTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTAATGCCCCATAAATTTCTGACCG‑AAAACGGCTAAC‑A‑CCGGCTTAA‑TTT‑CCC‑GCAGCCCCCTGGGTTTTCTCAAGGGGGAT‑TTTTTTTTTTTTTCTTTT‑TTT‑‑CCCCCCCCCCCACAAAAATTTTCA‑TTTaa                                                                                                                >  2:630820/1‑239 (MQ=255)
                                                                                                                                 gTACTGGTCATATTGAAAACCGTTATAAGAACTGCTCTTACGACTCCCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGa                                                                                                     <  2:1132223/239‑1 (MQ=255)
                                                                                                                                 gTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGGCCTACTTCCCACAAAATCTCTGACAG‑AAATACGCTAAC‑A‑CCGGGTTTA‑TTT‑TCC‑CCCGCCCCCTTGGGTTTT‑CTCGGGGGGG‑TTTGTTTTTTTTTTCTTC‑TTGTCCCCCCCCCCAAAAAAACATTTTCTTTTTaaactatcct                                                                                                        >  2:847671/1‑231 (MQ=255)
                                                                                                                                  ttcTGGTCATTTTGAAAACCTTGATAAGAACTGCTTCTACGACTACCGGCTGCACCCGGCAATGTCTATTTCTAAAATCATTGGCTGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGAt                                                                                                    <  1:997310/237‑1 (MQ=255)
                                                                                                                                    cTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATaa                                                                                                  <  2:981383/239‑1 (MQ=255)
                                                                                                                                      ggTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGGCCTCCTGCACAGGAAATCTCTTACAG‑AAAACGGGTAAC‑A‑CCCGTTTTA‑TTG‑CCC‑CGCCCCCTCCGGGTTTTT‑CCAGGGCGGG‑TTTGTTTCTTTGTCCTTT‑TTT‑‑TCCCCCCCCCTCAAAAAAATTTCACTTTTaatttaatttttttaat                                                                                                >  2:1127628/1‑232 (MQ=255)
                                                                                                                                        gtattttGAAAACCGTGATAAGAACTGCCCTTACGGCTTCCTTCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTAc                                                                                              <  1:52323/234‑1 (MQ=255)
                                                                                                                                         cATTTTGAAAACCGTGATAAGAACTTGTTTTACGACTTCCTGCTCCCCCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTAc                                                                                              <  1:998356/238‑1 (MQ=255)
                                                                                                                                         cATATTGAAACCCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTAc                                                                                              <  2:963601/238‑1 (MQ=255)
                                                                                                                                         cATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCTGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTAc                                                                                              <  2:843280/238‑1 (MQ=255)
                                                                                                                                          atatTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACAt                                                                                            <  2:576871/239‑1 (MQ=255)
                                                                                                                                                    cctttaaaaGAACTGCTTTTACGACTACCGGCTGCCCCCGGCAATTTCTATTTTCAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCca                                                                                  <  1:669330/232‑1 (MQ=255)
                                                                                                                                                    cctgtaTAAAAATTGTTCTTCCGCTTTCCTGCTTCCCCCGGCAATTTATATTTCAAAATACATTGGGTGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATACAATTAGATAACTACAGCCATTAGCca                                                                                  <  1:17297/234‑1 (MQ=255)
                                                                                                                                                    ccGTGATAAGAACTTCTTTTTCGACTACCTGCCGCACCCGGCAATTTTTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCca                                                                                  <  1:1250713/239‑1 (MQ=255)
                                                                                                                                                    ccGTGATAAAAACTGCCTTTACGGCTTCCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCca                                                                                  <  1:1127628/239‑1 (MQ=255)
                                                                                                                                                      gTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGGCCCACTCCACAGTAAAGCTCTTACAG‑AAAACGGCTAAC‑A‑CCCGTTTAATTTC‑CCC‑CACCCCCCCTGGTTTTCC‑CGAGGG‑GTATTTTGTTTTTTTTCCTTTT‑TTC‑‑CCCCCCCCCGCAAAAAAATTTTACTTTTAATTTCAAttttttaaatcctccctttgcccca                                                                                 >  2:593223/1‑217 (MQ=255)
                                                                                                                                                              accTGCTCTTACGTCTCCCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGGTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATc                                                                        <  1:249099/237‑1 (MQ=255)
                                                                                                                                                               aCTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGTGGGCCTCCCGCCCAGAAAAGATCTGACAA‑AAAACAGCTAAC‑A‑CCGGGTTTA‑TTT‑CCC‑CACGCCCCCTGGGTTTTT‑CTACGGGGGC‑TTTGTTTTTATTTTCTTT‑TTT‑‑GCCCCCCCCCCGAAAACATTTTTACCTTAAATTCAATTTATTTAAAACAACCATTAGAcaaaaaccgat                                                                         >  1:1110921/1‑228 (MQ=255)
                                                                                                                                                                             tACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGGCCTACTGCACAGTAAGTCTCTTACAG‑AAAAAGGCTAACAA‑CCGGTTTAT‑TTC‑CCG‑GCCCCCCCCGGGTTTTTC‑CGGGGGGGAT‑TTTGTTTTTTTTTCTTTT‑TTC‑‑CCCCCCCCCGACAAAAATTTTTCATTTTAATTTCATTTTG‑TAACTCACTCCCTTTACCCCACCGCCGTCCTTGTGCGAATtttt                                                         >  2:814400/1‑239 (MQ=255)
                                                                                                                                                                                   ctgccaccGGCAATTTCTTTTTCTAAAATCCTTGGCGGTGGCGGTCCTTCTGCACAGTAAGTCGCTGGCAG‑AAATCGGCTAAC‑G‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGc                                                                                    <  1:193729/200‑1 (MQ=255)
                                                                                                                                                                                     tccccccGCATTTTTTATTTCTAAAATCATTGGGTGTTTCGGTCCTTCTGCACAGTAAGTTCTTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCGGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTTACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTtc                                                <  1:498428/236‑1 (MQ=255)
                                                                                                                                                                                     gcACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTtc                                                <  2:655245/239‑1 (MQ=255)
                                                                                                                                                                                       cccccgaattttttgtttttaAAAACATTGGCGGTTGCGGTCCTTCTGCCCAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑C‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTTGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTtcct                                              <  1:814400/224‑1 (MQ=255)
                                                                                                                                                                                       ccccGTCATTTTTTTTTTTTAAAATTATTGGCGGTTGCGGTTCTTCTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTtcct                                              <  1:630820/238‑1 (MQ=255)
                                                                                                                                                                                          cGGCAATTTTTTTTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAAGCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TGG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCca                                           <  1:849878/239‑1 (MQ=255)
                                                                                                                                                                                            gctatttttatttctAAAATCATTGGGGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGGTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCcaca                                         <  1:308220/236‑1 (MQ=255)
                                                                                                                                                                                            gCAATTTCTATTTCTAAAATCATTGGCGTTTGCGGTCTTACTGCACAGTAAGTCTCGGAACG‑AAATCGGCTAAC‑C‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCcaca                                         <  1:1269312/239‑1 (MQ=255)
                                                                                                                                                                                             cAATTTTTTTTTTTAAAACTAGTGGCGGTTGGGGTCCTTCTTCACACTAAGTCCGTTACAG‑AAATCGGCTAAC‑T‑ACGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCGCTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCcaca                                         <  1:928065/238‑1 (MQ=255)
                                                                                                                                                                                                  ttttttttttaaaTCATTGGCGGTTGGGGTCCTACTGCCCAGGAAGGCTCGTACAG‑AAATCGGCTAAC‑C‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACAt                                   <  1:1250570/229‑1 (MQ=255)
                                                                                                                                                                                                  tctatttctaAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTA‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACAt                                   <  2:629925/239‑1 (MQ=255)
                                                                                                                                                                                                   ctatttctaAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATa                                  <  2:1110921/239‑1 (MQ=255)
                                                                                                                                                                                                          taAAATCATTGGGGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAAcatcat                           <  2:281442/239‑1 (MQ=255)
                                                                                                                                                                                                           aaatataatggggtgtGCGGGCCTTCTGCACTGTAAGTCTCTGAAAG‑AAAACGGCTAAC‑T‑ACGGTTTAA‑TTG‑CCC‑GACGCCCCCTGGATTTTC‑CGAGGGCTTA‑TTTTTTTCTAGGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTGCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCata                          <  1:1184080/224‑1 (MQ=255)
                                                                                                                                                                                                           aaaaTCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCata                          <  2:192210/239‑1 (MQ=255)
                                                                                                                                                                                                             aaTCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAtg                        <  2:316955/239‑1 (MQ=255)
                                                                                                                                                                                                             aaTCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAtg                        <  2:912682/239‑1 (MQ=255)
                                                                                                                                                                                                                             ggTCCTACTGCACAGTAAGTCCCTGACAG‑AAATCGGCTAAC‑T‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTtcct                                              <  2:885265/201‑1 (MQ=255)
                                                                                                                                                                                                                                   aCTGCCCAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATATGTTGTTATATTCATCATGCATTg  <  2:774534/239‑1 (MQ=255)
                                                                                                                                                                                                                                   aCTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATATGTTGTTATATTCATCATGCATTg  <  2:258600/239‑1 (MQ=255)
                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                     
TTAACGAGCAGTCTGCTTATATTCATATAATCAATGAATATTAATTAATATATAATACATAGGGAATGTAAATGAACAAATTTATTAAAGTTGCACTGGTAGGTGCAGTACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑A‑CCGGTTTAA‑TTG‑CCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATATGTTGTTATATTCATCATGCATTG  >  NC_000913/3499375‑3499840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A