Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F18 I0 R1	274	115.5	2655328	86.7%	2302169	226.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	3,499,692	G→T	13.4%	intergenic (+79/‑216)	yhfL → / → frlA	small lipoprotein/putative fructoselysine transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,499,692	0	G	T	13.4%	214.8 / 4.9	81	intergenic (+79/‑216)	yhfL/frlA	small lipoprotein/putative fructoselysine transporter
Reads supporting (aligned to +/- strand): ref base G (22/47); new base T (9/3); total (31/50)
Fisher's exact test for biased strand distribution p-value = 8.13e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CTGGTAGGTGCAGTACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAT‑GTTGTTATATTCATCATGCATTGTCATGTTACCTTTTAAATGACTGCAAACT‑CTCCCCTACAACGTATTGGACAAGAAAAAGGTATCGCTATGGG  >  NC_000913/3499470‑3499912

gtgtgggttttgtaaagagacaagTTAAATGTATTTACGGGTCATATTGAAAACCGTAATAAGAACTGCTCTTACGACTACCGGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCcccgc                                                                                                                                                                                                                 <  1:847671/216‑1 (MQ=255)

   gTAGGTGCAGTACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGGTGCGGGCCTACTGCACACAAAATCTCTTACCG‑AAAACGGCTAAC‑ACCCGTTTAT‑ATTTCC‑GCCACCCTCTGGGTTTTT‑CCCGTGCGCG‑TTTTTTTCTCTGTGCTTC‑TTT‑‑Ccccccccc                                                                                                                                                                                                               >  2:1269312/1‑238 (MQ=255)

        tGCAGTACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTTCGGTCCCACTGCCCAAAAAATCTCTTACAGAAAATCGG‑TCAC‑ACCCGGTTTA‑TTGCCC‑CCCGCCCCCCTGAATTTC‑CGAGGGCGGC‑TTTTTTTCTTTGTCCCTC‑TTT‑‑Ccccccccccccaaa                                                                                                                                                                                                         >  2:498428/1‑233 (MQ=255)

        tGCAGTACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTTCGGGCCTCCTGCCCAGTAAGTCTCTGACAG‑AAAACGGCTAAC‑ACCCGTTTTA‑TTTCCC‑CGCGCCCCCCGGAGTTTT‑CCAGGGCGGC‑TTTGTTTCTTTTTCATTC‑TTT‑‑CCcccgcccctccaa                                                                                                                                                                                                         >  2:849878/1‑233 (MQ=255)

             tACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTTCGGTCCTACTGCACCGTAAGTCTCTGAAAG‑AAAAACGCCAAC‑ACCCGATTTA‑TTTCCC‑CACGCCCTCTGGGTTTTT‑CTCGGGCGGA‑TTTGTTTTTTTTTTCTTC‑TTA‑‑CCCCCCCCCGTCAAAAAAtt                                                                                                                                                                                                    >  2:928065/1‑239 (MQ=255)

             tACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGTGGTGCCGCTGCACAATAAATATCTGACAT‑AAACTGGCTAAC‑CCCGTTGTTA‑TTTACC‑GACGCCCCCTGGATGTTT‑CGTGGGGGGA‑TTTGTTTTTTTGTCCTTC‑TTG‑‑Ccccccccctccaaaaaatt                                                                                                                                                                                                    >  2:249099/1‑228 (MQ=255)

             tACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGGCCTACTTCACCATAAAACTCTGACAG‑AAATAGGCTAAC‑ACCCGGTTAA‑TTTCCC‑GCCGCCCCCTGGGTTTTT‑CTAGGGCGGA‑TTTGTTTTTTTGTCCTTCTTTG‑‑CCCCCCCCCCCaaaaaatt                                                                                                                                                                                                     >  2:998356/1‑236 (MQ=255)

             tACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGGCCTACTTCACAGTCAGTCTCTGTCAG‑AAATAGGCTAAC‑ACCCGGTTTA‑TTTCCC‑GACGCCCCCTGTGGTTTT‑CTACGGCGGA‑TTTTTTTTTATGTCCTTT‑TTT‑‑Ccccccccccccaaaaaatt                                                                                                                                                                                                    >  2:1250570/1‑228 (MQ=255)

             tACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCCGGCCCACAGCCCCATAAATTTCTGACAG‑AAATACGCTAAA‑ACCCGGTTTA‑TTTCCC‑GGCTCCCCCTGTGCTTTC‑CCCGAGTGCA‑TGTGTTTTTATGTCCCTC‑CTGTCCCCCCCCCCGCAAAAatt                                                                                                                                                                                                      >  2:1184080/1‑238 (MQ=255)

                  gCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTTCGGGCCTACTGCCCACTCAGTCTTTTGCAG‑AAAATCGCTTAC‑ACCCGTTTTA‑TTTCCCGGCCCCCCCCTGGTTTTTC‑TGAGGGGGAT‑TTTTTTTTTTTTCCCTTT‑TTC‑‑CCcccccccgaccacatttttt                                                                                                                                                                                                  >  2:669330/1‑225 (MQ=255)

                  gCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTCCCTCACAATAAATCTCTCACCG‑AAAACGGGTCAC‑ACCCGGTTAC‑TTTGCC‑CCCGCCCTCTCGAGTTTC‑CGAGGGCGTA‑TTTGTTTTTATTTCCTTCTTTG‑‑CCCCCCCCCTCAAAAAAAtttc                                                                                                                                                                                                  >  2:52323/1‑236 (MQ=255)

                  gCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGGCCTACTTCACCGTAAGTCTCTGACAG‑AAATCGGCTAAA‑CACGGTTTAA‑TTTTCC‑GCCGCCCCCTCGGTTTTC‑CGAAGGCGGA‑TTTTTTTCTTTGTCCTTC‑TTG‑‑TCCCCGCCCCCTAAAAAAttttt                                                                                                                                                                                                 >  2:211629/1‑236 (MQ=255)

                       gTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTAATGCCCCATAAATTTCTGACCG‑AAAACGGCTAAC‑ACCGGCTTAA‑TTTCCC‑GCAGCCCCCTGGGTTTTCTCAAGGGGGAT‑TTTTTTTTTTTTTCTTTT‑TTT‑‑CCCCCCCCCCCACAAAAATTTTCA‑TTTaa                                                                                                                                                                                          >  2:630820/1‑239 (MQ=255)

                                  gTACTGGTCATATTGAAAACCGTTATAAGAACTGCTCTTACGACTCCCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGa                                                                                                                                                                               <  2:1132223/239‑1 (MQ=255)

                                  gTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGGCCTACTTCCCACAAAATCTCTGACAG‑AAATACGCTAAC‑ACCGGGTTTA‑TTTTCC‑CCCGCCCCCTTGGGTTTT‑CTCGGGGGGG‑TTTGTTTTTTTTTTCTTC‑TTGTCCCCCCCCCCAAAAAAACATTTTCTTTTTaaactatcct                                                                                                                                                                                  >  2:847671/1‑231 (MQ=255)

                                   ttcTGGTCATTTTGAAAACCTTGATAAGAACTGCTTCTACGACTACCGGCTGCACCCGGCAATGTCTATTTCTAAAATCATTGGCTGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGAt                                                                                                                                                                              <  1:997310/237‑1 (MQ=255)

                                     cTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATaa                                                                                                                                                                            <  2:981383/239‑1 (MQ=255)

                                       ggTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGGCCTCCTGCACAGGAAATCTCTTACAG‑AAAACGGGTAAC‑ACCCGTTTTA‑TTGCCC‑CGCCCCCTCCGGGTTTTT‑CCAGGGCGGG‑TTTGTTTCTTTGTCCTTT‑TTT‑‑TCCCCCCCCCTCAAAAAAATTTCACTTTTaatttaatttttttaat                                                                                                                                                                          >  2:1127628/1‑232 (MQ=255)

                                         gtattttGAAAACCGTGATAAGAACTGCCCTTACGGCTTCCTTCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTAc                                                                                                                                                                        <  1:52323/234‑1 (MQ=255)

                                          cATTTTGAAAACCGTGATAAGAACTTGTTTTACGACTTCCTGCTCCCCCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTAc                                                                                                                                                                        <  1:998356/238‑1 (MQ=255)

                                          cATATTGAAACCCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTAc                                                                                                                                                                        <  2:963601/238‑1 (MQ=255)

                                          cATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCTGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTAc                                                                                                                                                                        <  2:843280/238‑1 (MQ=255)

                                           atatTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACAt                                                                                                                                                                      <  2:576871/239‑1 (MQ=255)

                                                     cctttaaaaGAACTGCTTTTACGACTACCGGCTGCCCCCGGCAATTTCTATTTTCAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCca                                                                                                                                                            <  1:669330/232‑1 (MQ=255)

                                                     cctgtaTAAAAATTGTTCTTCCGCTTTCCTGCTTCCCCCGGCAATTTATATTTCAAAATACATTGGGTGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATACAATTAGATAACTACAGCCATTAGCca                                                                                                                                                            <  1:17297/234‑1 (MQ=255)

                                                     ccGTGATAAGAACTTCTTTTTCGACTACCTGCCGCACCCGGCAATTTTTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCca                                                                                                                                                            <  1:1250713/239‑1 (MQ=255)

                                                     ccGTGATAAAAACTGCCTTTACGGCTTCCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCca                                                                                                                                                            <  1:1127628/239‑1 (MQ=255)

                                                       gTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGGCCCACTCCACAGTAAAGCTCTTACAG‑AAAACGGCTAAC‑ACCCGTTTAATTTCCCC‑CACCCCCCCTGGTTTTCC‑CGAGGG‑GTATTTTGTTTTTTTTCCTTTT‑TTC‑‑CCCCCCCCCGCAAAAAAATTTTACTTTTAATTTCAAttttttaaatcctccctttgcccca                                                                                                                                                           >  2:593223/1‑217 (MQ=255)

                                                               accTGCTCTTACGTCTCCCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGGTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATc                                                                                                                                                  <  1:249099/237‑1 (MQ=255)

                                                                aCTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGTGGGCCTCCCGCCCAGAAAAGATCTGACAA‑AAAACAGCTAAC‑ACCGGGTTTA‑TTTCCC‑CACGCCCCCTGGGTTTTT‑CTACGGGGGC‑TTTGTTTTTATTTTCTTT‑TTT‑‑GCCCCCCCCCCGAAAACATTTTTACCTTAAATTCAATTTATTTAAAACAACCATTAGAcaaaaaccgat                                                                                                                                                   >  1:1110921/1‑228 (MQ=255)

                                                                              tACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGGCCTACTGCACAGTAAGTCTCTTACAG‑AAAAAGGCTAACAACCGGTTTAT‑TTCCCG‑GCCCCCCCCGGGTTTTTC‑CGGGGGGGAT‑TTTGTTTTTTTTTCTTTT‑TTC‑‑CCCCCCCCCGACAAAAATTTTTCATTTTAATTTCATTTTG‑TAACTCACTCCCTTTACCCCACCGCCGTCCTTGTGCGAATtttt                                                                                                                                   >  2:814400/1‑239 (MQ=255)

                                                                                    ctgccaccGGCAATTTCTTTTTCTAAAATCCTTGGCGGTGGCGGTCCTTCTGCACAGTAAGTCGCTGGCAG‑AAATCGGCTAAC‑GCCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGc                                                                                                                                                              <  1:193729/200‑1 (MQ=255)

                                                                                      tccccccGCATTTTTTATTTCTAAAATCATTGGGTGTTTCGGTCCTTCTGCACAGTAAGTTCTTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCGGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTTACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTtc                                                                                                                          <  1:498428/236‑1 (MQ=255)

                                                                                      gcACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTtc                                                                                                                          <  2:655245/239‑1 (MQ=255)

                                                                                        cccccgaattttttgtttttaAAAACATTGGCGGTTGCGGTCCTTCTGCCCAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑CCCGGTTTAA‑TTGCCC‑GACGCCCTCTTGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTtcct                                                                                                                        <  1:814400/224‑1 (MQ=255)

                                                                                        ccccGTCATTTTTTTTTTTTAAAATTATTGGCGGTTGCGGTTCTTCTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTtcct                                                                                                                        <  1:630820/238‑1 (MQ=255)

                                                                                           cGGCAATTTTTTTTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAAGCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TGG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCca                                                                                                                     <  1:849878/239‑1 (MQ=255)

                                                                                             gctatttttatttctAAAATCATTGGGGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGGTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCcaca                                                                                                                   <  1:308220/236‑1 (MQ=255)

                                                                                             gCAATTTCTATTTCTAAAATCATTGGCGTTTGCGGTCTTACTGCACAGTAAGTCTCGGAACG‑AAATCGGCTAAC‑CCCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCcaca                                                                                                                   <  1:1269312/239‑1 (MQ=255)

                                                                                              cAATTTTTTTTTTTAAAACTAGTGGCGGTTGGGGTCCTTCTTCACACTAAGTCCGTTACAG‑AAATCGGCTAAC‑TACGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCGCTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCcaca                                                                                                                   <  1:928065/238‑1 (MQ=255)

                                                                                                   ttttttttttaaaTCATTGGCGGTTGGGGTCCTACTGCCCAGGAAGGCTCGTACAG‑AAATCGGCTAAC‑CCCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACAt                                                                                                             <  1:1250570/229‑1 (MQ=255)

                                                                                                   tctatttctaAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTA‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACAt                                                                                                             <  2:629925/239‑1 (MQ=255)

                                                                                                    ctatttctaAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATa                                                                                                            <  2:1110921/239‑1 (MQ=255)

                                                                                                           taAAATCATTGGGGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAAcatcat                                                                                                     <  2:281442/239‑1 (MQ=255)

                                                                                                            aaatataatggggtgtGCGGGCCTTCTGCACTGTAAGTCTCTGAAAG‑AAAACGGCTAAC‑TACGGTTTAA‑TTGCCC‑GACGCCCCCTGGATTTTC‑CGAGGGCTTA‑TTTTTTTCTAGGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTGCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCata                                                                                                    <  1:1184080/224‑1 (MQ=255)

                                                                                                            aaaaTCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCata                                                                                                    <  2:192210/239‑1 (MQ=255)

                                                                                                              aaTCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAt‑g                                                                                                 <  2:316955/239‑1 (MQ=255)

                                                                                                              aaTCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAt‑g                                                                                                 <  2:912682/239‑1 (MQ=255)

                                                                                                                              ggTCCTACTGCACAGTAAGTCCCTGACAG‑AAATCGGCTAAC‑TCCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTtcct                                                                                                                        <  2:885265/201‑1 (MQ=255)

                                                                                                                                    cctctcacgTAAGTCTTTGACGA‑AATTGGGCTTAC‑CTCGGTTTAA‑TTTCCC‑CTCGTCTCCTGGTTTTGT‑CGAGGTCTTT‑TTTGTTTCTATTCCCTTC‑TTG‑‑CCCCCGTCCGTAAAAATATTTTCCCTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGTGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAT‑GTTGTTATATTCATCATGCATTg                                                                           <  1:313193/231‑1 (MQ=255)

                                                                                                                                    aCTGCCCAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAT‑GTTGTTATATTCATCATGCATTg                                                                           <  2:774534/239‑1 (MQ=255)

                                                                                                                                    aCTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAT‑GTTGTTATATTCATCATGCATTg                                                                           <  2:258600/239‑1 (MQ=255)

                                                                                                                                          caGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACCTTACATAACATCATAT‑GTTGTTATAtt                                                                                       >  2:381701/1‑221 (MQ=255)

                                                                                                                                           cggtattctcTGACAG‑AAATCTGCTAAC‑ATCTGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTTCTTC‑TTG‑‑CCTCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAAcatc                                                                                                       <  1:449937/199‑1 (MQ=255)

                                                                                                                                            gTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTCCATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAAcatcaaa                                                                                                    >  1:1326838/1‑205 (MQ=255)

                                                                                                                                            gTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCata                                                                                                    <  2:1326838/207‑1 (MQ=255)

                                                                                                                                             tAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACCGCGCGATCC‑TGTGCGAAATTTTTTGATCTTCCTCCACATTACATAAAATCATAT‑TTTGTTTTATTTATAATAcattttcatttt                                                                    >  1:1196185/1‑237 (MQ=255)

                                                                                                                                             tAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAT‑GTTGTTATATTCATCATGCATTTTCATGTTa                                                                   >  2:202955/1‑238 (MQ=255)

                                                                                                                                               aGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAT‑GTTGTTATATTCATCATGCATTGTCATGTTACCt                                                                >  2:600504/1‑239 (MQ=255)

                                                                                                                                                gTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAgcg                                                                                                                                                       <  2:389599/153‑1 (MQ=255)

                                                                                                                                                gTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAgcg                                                                                                                                                       >  1:389599/1‑153 (MQ=255)

                                                                                                                                                  ctctGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAT‑GTTGTTATATTCATCATGCATTGTCATGTTACCtttt                                                             >  1:211946/1‑239 (MQ=255)

                                                                                                                                                             aaTCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TTTGCGAAATTTTGTGa                                                                                                                               >  1:71489/1‑164 (MQ=255)

                                                                                                                                                             aaTCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGa                                                                                                                               <  2:71489/164‑1 (MQ=255)

                                                                                                                                                               tCGGGTAAC‑CCCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATTTCCTTC‑TTG‑‑‑CCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAT‑GTTGTTATATTCATCATGCATTGTCATGTTACCTTTTAAATGACTGCaaa                                                <  2:890202/239‑1 (MQ=255)

                                                                                                                                                                    tAAC‑CCTGGTTTAA‑TTTCCC‑GTCCCCCTCTGGATTTTC‑CGAAGGTTTT‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCCCTTTAAATTCAATTTTATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAT‑GTTGTTATATTCATCATGCATTGTCATGTTACCTTTTAAATGACTGCAAAct‑c                                            <  1:184481/238‑1 (MQ=255)

                                                                                                                                                                       c‑acCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAT‑GTTGTTATATTCATCATGCATTGTCATGTTACCTTTTAAATGACTGCAAACT‑CTccc                                        <  2:1252955/239‑1 (MQ=255)

                                                                                                                                                                             ttaaagtccagccccatccccTTTGTATTTTC‑CAAGGGCTTT‑TTTGTTTCTATGTCCTTC‑TTT‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAT‑GTTGTTATATTCATCATGCATTGTCATGTTACCTTTTAAATGACTGCAAACT‑CTCCCCTa                                     <  1:108200/221‑1 (MQ=255)

                                                                                                                                                                             gTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGTTAACTACATCCATTAGCCACAGCGCGATCC‑TTTTCGAAATTTTACGATCTTCTTCCACATTACATAACATCATAT‑GTTGTTATATCCATCATGCATTGTCAGGTTACCTTTTAAATACTTGCAAACT‑ccccccacca                                   >  1:425850/1‑235 (MQ=255)

                                                                                                                                                                              tttAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAT‑GTTGTTATATTCATCATGCATTGTCATGTTACCTTTTAAATGACTGCAAACT‑CTCCCCTACa                                   <  2:425850/238‑1 (MQ=255)

                                                                                                                                                                                  a‑TTGCCC‑GACCCCCTCGGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTC‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATGTGATAACTACATCCATTAGCCACAGCTCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAT‑GTTGTTATATTCATCATGCAGTGTCATGTTACCTTTTAAATGACTGCAAACT‑CTCCCCTACAACGTa                              <  2:842461/239‑1 (MQ=255)

                                                                                                                                                                                        cc‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAT‑GTTGTTATATTCATCATGCAtt                                                                            <  2:748896/189‑1 (MQ=255)

                                                                                                                                                                                        cc‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAT‑GTTGTTATATTCATCATGCAtt                                                                            >  1:748896/1‑189 (MQ=255)

                                                                                                                                                                                          agacagccTTTGGATTTTC‑CGAGGGCTTT‑TTTTTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAT‑GTTGTTATATTCATCATGCATTGTCATGTTACCTTTTAAATGACTGCAAACT‑CTCCCCTACAACGTATTGGAc                        <  1:270427/233‑1 (MQ=255)

                                                                                                                                                                                                  tctGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGCCCTTC‑TTG‑‑CCCCCACCCGTAAAAGTATTTTCACTTTAAATTCAATTTGAAAACTACACCCATTAACCACACGGCGATCC‑CGGGCGAAATTTTGTGATCTACCACCCCATTAATTAACA‑CATATAGTTGTTATTTTCATAATGCCTCTCCATGTGACCTTTTAAATGCATGCAAACTACTccctaaaaatatttgaaaaagaaaaa                 >  1:620455/1‑216 (MQ=255)

                                                                                                                                                                                                   ctGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAT‑GTTGTTATATTCATCATGCATTGTCATGTTACCTTTTAAATGACTGCAAACT‑CTCCCCTACAACGTATTg                           >  2:108200/1‑227 (MQ=255)

                                                                                                                                                                                                      gATTTTC‑CGAGGGCGTT‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAAATCAATTTGATAACTGCATCCATTCGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAT‑GTTGTTATATTCATCATGCATTGTCATGTTACCTTTTAAATGACTGCAAACT‑CTCCCCTACAACGTATTGGACAAGAAAAAGGTa            <  2:620455/239‑1 (MQ=255)

                                                                                                                                                                                                           tC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAT‑GTTGTTATATTCATCATGCATTGTCATGTTACCTTTTAAATGACTGCAAACT‑CTCCCCTACAACGTATTGGACAAGAAAAAGGtctgtct       >  2:270427/1‑233 (MQ=255)

                                                                                                                                                                                                                    gctgtttttttTCTTTTTCCTTT‑TTT‑‑CCCCCCCCCGTAAAAATATTTTCTCTTTTAATTCAATTTGATAACTACATCCATTAGCCACAACCCGATCC‑TGTGCTAAATTTTGTGATCTTCCTCCACATTACATAACATCATAT‑GTTGTTATATTCATCATGCATTGTCATGTTACCTTTTAAATGACTGCAAACT‑CTCCCCTACAACGTATTGGACAAGAAAAAGGTATCGCTATggg  <  1:125505/232‑1 (MQ=255)

                                                                                                                                                                                                                                   tGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAT‑GTTGTTATATTCATCATGCAt                                                                             <  2:1291660/148‑1 (MQ=255)

                                                                                                                                                                                                                                   tGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAT‑GTTGTTATATTCATCATGCAt                                                                             >  1:1291660/1‑148 (MQ=255)

CTGGTAGGTGCAGTACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAG‑AAATCGGCTAAC‑ACCGGTTTAA‑TTGCCC‑GACGCCCTCTGGATTTTC‑CGAGGGCGTA‑TTTGTTTCTATGTCCTTC‑TTG‑‑CCCCCGCCCGTAAAAATATTTTCACTTTAAATTCAATTTGATAACTACATCCATTAGCCACAGCGCGATCC‑TGTGCGAAATTTTGTGATCTTCCTCCACATTACATAACATCATAT‑GTTGTTATATTCATCATGCATTGTCATGTTACCTTTTAAATGACTGCAAACT‑CTCCCCTACAACGTATTGGACAAGAAAAAGGTATCGCTATGGG  >  NC_000913/3499470‑3499912

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A