Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F18 I0 R1 274 115.5 2655328 86.7% 2302169 226.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,542,224 C→T 13.1% R63C (CGC→TGC)  fimE → tyrosine recombinase/inversion of on/off regulator of fimA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,542,2240CT13.1% 317.8 / 7.2 135R63C (CGC→TGC) fimEtyrosine recombinase/inversion of on/off regulator of fimA
Reads supporting (aligned to +/- strand):  ref base C (60/53);  new base T (16/3);  total (78/57)
Fisher's exact test for biased strand distribution p-value = 1.21e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 141 total aligned reads displayed.

ATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTG  >  NC_000913/4542000‑4542462
                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                 
attcattcAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAAc                                                                                                                                                                                                                                     <  2:1140424/239‑1 (MQ=255)
 ttcattcaAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAAc                                                                                                                                                                                                                                     <  2:102685/238‑1 (MQ=255)
 ttcattcaAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGATTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGGGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACg                                                                                                                                                                                                                                    >  2:1321692/1‑239 (MQ=255)
  tcattcaAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTTGCCGACTGAAGAACgg                                                                                                                                                                                                                                   >  2:1176340/1‑239 (MQ=255)
        aaaTATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTTCTGGGCAACAGGAGCCAGAGATTATTGTCTTATTCTTTTGGCATATCGGCATGGGATGCGGGTTTGTTGACGTCTTGATTTGCCTTATCTGGGCCTTTACCTTAATGAAGGCAAGAAAAATATTCGCCGaactaaaaacaggctttt                                                                                                                                                                                                                             >  1:102685/1‑222 (MQ=255)
                             actactATAGAGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCCAAGATTATTGTCTTATTCTGTTGGGATAACGGCATGGGATGCGGATTAGTGGACTGCTTGTTCTGTCTTATAAGGGCCTTGACCTTAAGTTAGGGAGAATAAAAATTCCACGACTGCAGAACGGATTTTTTAA‑C‑CGT‑GACCCGGTAAGttt                                                                                                                                                                                                     >  1:837179/1‑239 (MQ=255)
                               tactaTTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTTATGAAGGGAGAATAAATATTTGCCGCCTGAAGAACGGGTTTTTTAC‑C‑CTT‑CACCCGTTACCGTTtg                                                                                                                                                                                                   >  2:439591/1‑239 (MQ=255)
                                 ctaTTGTGAATAAACGTTGTTATCTTAACGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTTTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTtgat                                                                                                                                                                                                 <  1:1321692/239‑1 (MQ=255)
                                      gtgAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTTTGTTGGCATATCGGCATTGGATGGGGATTAGTGAAACGCTTGATTTGCATTTTCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTTGCCGACTGAAGAAAGGATTTTTTAC‑C‑GTT‑CATCCGTTACGTTTTGTTGAGCg                                                                                                                                                                                            >  2:888995/1‑239 (MQ=255)
                                      gtgAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGGATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTTATGAGCg                                                                                                                                                                                            >  2:271186/1‑239 (MQ=255)
                                        gatttagccgcgtTATCCTCCCGGTAAAGAAGTGCAGGCCTTTATGCAGGCGGTTTGCGACGGGGCAACGGGCGCCAGAGATTAGTGTCGTATTCTGTCTGCATTGCGGCATTGGATGCGTATGAGTGAACTGCTTGATATGCATTATCAGGACCGTGGCCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGTATTTTCTAC‑C‑GTT‑CGCCCGTTACGTTTTGATGAGCGTg                                                                                                                                                                                          <  1:861245/229‑1 (MQ=255)
                                         aGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTTTTACCGGGCAAAGGGGGCCAGGGCATATTTTCTTATTTTTTTGGCATTTCGGCATGGGGGCGGCATTATCGAACTTCTTGTTCTGCATTATCAGGCACTTTCTCTATATGAGAGTACAATAAAATTTTCCCCACTGAAAAACGGGTTTTCTTC‑CAGTT‑AACCCGtacagttttattgagggaa                                                                                                                                                                                          >  1:199074/1‑221 (MQ=255)
                                         aGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTTCTGGGCAACGGGAGCCAGAGGTTATTTTCTTATTTTTTTGGCATATCCGGATGGGGTGCGGATTAGTGACCTGCTTTGTTTCCATTTTCCGGCACTTGACCTTAATTAAGGAAGAATAAATATTGCCCGCCTGAAGAACGGCTTTTCTAC‑C‑GTT‑CCCCCGTTACGTTTTGTTGCGCGCGa                                                                                                                                                                                         >  2:1035223/1‑239 (MQ=255)
                                         aGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGGGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTTTCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTAGCCGCCTGAAGAACGGATTTTCTAA‑C‑GTT‑TACCCCTTACGGTTTTATGAggtgga                                                                                                                                                                                         >  2:1206966/1‑234 (MQ=255)
                                         aGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTTTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGGGAACTGCTTGATCTTCATTTTCATGACCTTGACCTTAATGAAGGTAGAATAAATATTTGCCGACTTGAGAACGGATTTTTTAC‑C‑GTT‑CCACCGTTAAGGTTTTATTGGCGTGa                                                                                                                                                                                         >  2:634542/1‑239 (MQ=255)
                                         aGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTTGTTTATTTTGTCGGCCATTCGGACTGGGAGGCGTATTAAGGAAAGGCTTCATCTGCCTTTTACGGCCCTTGACCTTAATGAAGGTGAAATTAAAATACTCCGACCGCAGAACGGGTTTTTTACAT‑GTT‑CACCCGtacgcttttgagaggggta                                                                                                                                                                                          >  1:727294/1‑221 (MQ=255)
                                         aGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTTTGTTGGCATATGGGCATGGGGTGCGTGTTAGTGAACTGCTTGTTCTTCATTATCCGGACCTTGTACTTTATGAAGGTAGAATAAATATTTTCCGACTGAAAAAAGGGTTTTTTCC‑C‑GTT‑CCCCCGTTACTTTTTGATTAggggga                                                                                                                                                                                         >  1:1187782/1‑234 (MQ=255)
                                         aGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAAGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCAAGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGGAGAATAAAAATTTGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTAACGTTtgattggcggga                                                                                                                                                                                         >  2:693256/1‑231 (MQ=255)
                                           tAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCCACGGGAGCCAGGGATTATTGTCTTATTTTGTTGGCATATCGGCATGGGATGCGTATTATTGAACTGCTTGATCTGCATTATCAGGCCCTTGACCTTAATGAAGGCAGAATAAATATTTTCCGACCGAAGAACGAATTTTCTAC‑C‑GTT‑CACCCCATAAGTTTTGATAAAGGTGaaa                                                                                                                                                                                       >  1:119966/1‑238 (MQ=255)
                                              aCGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGGATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCg                                                                                                                                                                                    >  2:1298657/1‑239 (MQ=255)
                                                gtttttttCTTACCGGTAAAGAAGTTCAGGCCATGGTGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTg                                                                                                                                                                                  <  1:1286259/232‑1 (MQ=255)
                                                       ttttcccGGTAAAGAGATTCAGGCCAGTATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATTGCGGCATGGGGTGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCt                                                                                                                                                                           <  1:208462/234‑1 (MQ=255)
                                                       tCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGGTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCt                                                                                                                                                                           <  2:837179/239‑1 (MQ=255)
                                                       tCTTACCGGTAAAGAAGTTCAGGCCATGAAGCAGGCGGTTTGGTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCt                                                                                                                                                                           <  2:831288/239‑1 (MQ=255)
                                                       agagaaaggTAAAGAAGTTAAGGCCATGATGCTGGCGGTTTTGTACGGTGCAACGGGAGCCGGAGATTATTGTCTTATTCTTTTGGCATATCGGCATTGTATGCGTATTAGTGAAAGTCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGAGTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCt                                                                                                                                                                           <  1:890922/232‑1 (MQ=255)
                                                       acgtACCGGTAAAGAAGTTCAGGACATGATGCAGGCGTGTTGTTACGGGGCAACGGGGGCCAGAGATTATTGGTTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCt                                                                                                                                                                           <  2:1280392/236‑1 (MQ=255)
                                                       acTTACCGGTAAAGAAGGTCAGGCCATGGTGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCt                                                                                                                                                                           <  2:19959/238‑1 (MQ=255)
                                                           aCCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTTCGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTTTTGGCATATCGGCATGGGATGCGGATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTTTAC‑C‑GTT‑TACCCGTTACCTTTTGATGAAGGGGAAACCGTGGAAAGCGGGa                                                                                                                                                                        >  1:717076/1‑238 (MQ=255)
                                                           aCCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGGGACAGGAGCCAGGGATTATTTTCTTTATCTGTTGGCATATCGGCATGGGAGGCGTATTTTTGAACTTGTTGATTTGCATTATCAGGACCTTGAACCTAATGAAGGGAGAAGAAATATTTCCCCACTGTAGAACGGGTTTTTTAC‑C‑GTG‑TCCCCCTTAAGTTTTGTTGAGAGGTAAGACGGGGaaacgtgga                                                                                                                                                                        >  1:1228769/1‑231 (MQ=255)
                                                           aCCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGGTTGTTACCGGGCAACGGGGGCCACGGATTATTTTCTTATTATGTTTGCACATCGGCATGGGGTGCGTATTAGTGGAATGCTTTATTTTGATTATACGGACCTTGACCTTAATTAAGGGAAGAAAAAAATTTGCCGACTGAAGAAAGGATTTTTCAC‑C‑GTTCCCCCCGCTATGTTTAG‑TGATGGTGAAACCGTGGaaaccgtga                                                                                                                                                                        >  1:268307/1‑231 (MQ=255)
                                                                 aaaGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGGATTAGGGAACTTCTTGATCTGCCTTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGCCTGAAGAACGGCTTTTTTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCCGGGGACGCTTGACCCCGGa                                                                                                                                                                 >  2:1175136/1‑239 (MQ=255)
                                                                  aagaagTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGGGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAAAACGGATTTTCTAC‑C‑GTT‑TACCCGTTACGTTTTGATGAGCGTGAAGCCCGGGAACGCTGGACCCAGGa                                                                                                                                                                 >  2:923657/1‑238 (MQ=255)
                                                                          cAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGGGAATATTGTCTTATTCTGTTGGCATATCGGCCAGGGTTGCGTATTAGGGAAATGCTTGATCTGCATTAGCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGCATGAAGAACGGATTTTTTAC‑C‑GTT‑CACCCGTTCCGTTTTGATTGCCGGTAAGCCCTGGAACCCTGTACCCCGGAACGTCCTaa                                                                                                                                                        >  2:98661/1‑239 (MQ=255)
                                                                          cAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGGGGATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTTGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑TAACCGTTACGTTTTGATGAGCGTGAAGACGTGGAACCGTTGACCCCGGGAccgtctct                                                                                                                                                        >  2:890922/1‑232 (MQ=255)
                                                                            taagtgtgtataaggagcaggTTCCGGTGCAACGGGGGCCAGCGGTTATGTTCGTAATCTGTTGGAATTGCGGGATGGGATGCGTATTAGTGAACTGCTTGATCTGCAGTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATGTTCGCCGCCTGAAGAACGGATTTTCTAC‑C‑GTT‑GACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAAc                                                                                                                                                       <  1:181357/218‑1 (MQ=255)
                                                                              ccATGATGCAGGCGGTTTGGTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCt                                                                                                                                                                           <  2:861362/216‑1 (MQ=255)
                                                                                  gatgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGcc                                                                                                                                                                                                                                                <  1:1039061/146‑1 (MQ=255)
                                                                                  gatgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGcc                                                                                                                                                                                                                                                >  2:1039061/1‑146 (MQ=255)
                                                                                        ggCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTTGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCCTTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATTATCGCCAACTGAAGATCGGATTTTCTAC‑C‑GTT‑TACCCGTTACGTTTTGGTAGGCGGGAAACCGTGGAACACCGGGCCCCCGAACGttttttttaaaccacccta                                                                                                                                           >  1:861362/1‑220 (MQ=255)
                                                                                         gCGGTTTGTTACGGGGCCACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTTCATTATCAAGACCTTGACCTTAATGAAGGTAGAATAAAAATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGGGAAGCCGTGGAACGCTTGACCCCGGAACGCGCTAACTGGAAAGGCGCTg                                                                                                                                          >  2:221161/1‑238 (MQ=255)
                                                                                                   tccgggAAAAGGGGGCCAGAGAATGTTGACTTATTCCTGTCGCATATCGGCATGGGATGCGTATTAGTAAACCGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGGCGACAGAAGAACGGAGTTGCTAC‑C‑GTT‑CACCCGTTACGTTTTGAAGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGAc                                                                                                                               <  2:1291186/236‑1 (MQ=255)
                                                                                                    cGGGGCAACGGGAGCTAGAGATTATTGTCTTAATCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACg                                                                                                                              <  2:1068320/239‑1 (MQ=255)
                                                                                                       ggCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATTACCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGGta                                                                                                                           >  2:1257862/1‑239 (MQ=255)
                                                                                                       ggCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTCTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGCGGCta                                                                                                                           >  2:5745/1‑239 (MQ=255)
                                                                                                           aCGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑AACCCGTTACGTTTTGATGGGCGTGAAGCCGGGGAACGCTGAACCCAGAAACGTGCTAACTGGAAAAGGGCTGCCCGGGCTGGCGCTAaatt                                                                                                                       >  1:769929/1‑239 (MQ=255)
                                                                                                                                  tATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGCCTGACGCTTAATTTATTTCTCGCCGCGGGGGGCggg                                                                                                >  1:1013139/1‑238 (MQ=255)
                                                                                                                                  tATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCCCGGGGGTCg                                                                                                  >  2:239036/1‑237 (MQ=255)
                                                                                                                                      cTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGCCGCATTATTTATTTCTCGCGCCGGGAGGCGGCTTtc                                                                                            >  1:220254/1‑239 (MQ=255)
                                                                                                                                         ttGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGCACGTGCTAACTGGAAAGGCGCTGACCGGGCTTACGCTATCTTTATTTCTACCCGCGGGGGTCGGCTTtctc                                                                                          >  1:905203/1‑238 (MQ=255)
                                                                                                                                         ttGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCAGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTCGCGCCATATTTATTTATCGCCGCGGAAGACGGCTTtctc                                                                                          >  1:388953/1‑238 (MQ=255)
                                                                                                                                              attgcGGCATGGGATGGCTTTTAGGGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCcag                                                                                     <  2:959192/234‑1 (MQ=255)
                                                                                                                                                     cATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCt                                                                              <  2:1077188/238‑1 (MQ=255)
                                                                                                                                                       tGGGATGTGTATTAGTGAATTGCTTGATCTGCATTATCAGGACCTTGGCCTTAATGAAGGTAGAATAAAGATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTGGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTAt                                                                            <  1:271186/238‑1 (MQ=255)
                                                                                                                                                           aTGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGCCTGACGCTATATTTATTTCTCGCCGCGGGGGTCGGCTTTCTCGCCggccggccattggcat                                                                       >  2:553393/1‑231 (MQ=255)
                                                                                                                                                           aTGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCat                                                                       >  2:1195328/1‑239 (MQ=255)
                                                                                                                                                              cGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTCGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCt                                                                                                                                                                           <  1:1157398/136‑1 (MQ=255)
                                                                                                                                                              cGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCt                                                                                                                                                                           >  2:1157398/1‑136 (MQ=255)
                                                                                                                                                                       gAACTGCTTGATCTGCATTAGCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGc                                                           <  2:292646/239‑1 (MQ=255)
                                                                                                                                                                       gAACTGCTTGAGCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGAt                                                             <  2:1228769/237‑1 (MQ=255)
                                                                                                                                                                        aaCTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGGGCTAACTGGAAAGGCGCTGACCGGACGGACGCTAAATTTATTTTCCGCGCGGGGAGTGGGCTTTTTAGCCAGAAGGCCATTCGAATTATTCCCGATGcg                                                          >  1:1118493/1‑238 (MQ=255)
                                                                                                                                                                          cTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTTTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCgg                                                        >  1:1106468/1‑239 (MQ=255)
                                                                                                                                                                             cTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCt                                                                                                                                                                           <  1:656680/121‑1 (MQ=255)
                                                                                                                                                                             cTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCt                                                                                                                                                                           >  2:656680/1‑121 (MQ=255)
                                                                                                                                                                              ttGATCTGGATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTAtt                                                    <  2:199074/239‑1 (MQ=255)
                                                                                                                                                                                   cTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAGCGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGc                                               <  2:128698/239‑1 (MQ=255)
                                                                                                                                                                                       aTTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTAAGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGCCTTACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCCCCAGCCGGCCTTTCGCCTTATTccgggacccggagatgaaggtgga                                           >  1:167722/1‑216 (MQ=255)
                                                                                                                                                                                           tCAGGCCCTTTACTTTATGTAAGGTTGATTAAATTTTCGCCGTCTGAAGAACGGATTTTCTAC‑C‑GTT‑CCCCCGTTACGTTTTGATGGGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCg                                       <  1:640050/239‑1 (MQ=255)
                                                                                                                                                                                           tCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGTCCGGACTGACGCTATATTTCTTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTTCAGTTGCCGGTATTGAAGCTGGAACCg                                       >  1:1052290/1‑239 (MQ=255)
                                                                                                                                                                                                accttgaccttAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGc                                                                                                                             >  2:847749/1‑148 (MQ=255)
                                                                                                                                                                                                accttgaccttAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGc                                                                                                                             <  1:847749/148‑1 (MQ=255)
                                                                                                                                                                                                accttgaccttAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAAc                                   >  2:35823/1‑238 (MQ=255)
                                                                                                                                                                                                accttgaccttAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCCCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTaaag                                  >  2:619486/1‑237 (MQ=255)
                                                                                                                                                                                                 tcttgactttTTTGAAGGTTAAATAAATTGTTGCCCGTTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGGGCGTGAAGCCGGGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGGTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACg                                  <  1:546220/237‑1 (MQ=255)
                                                                                                                                                                                                 ccttgaccttAATGAAGGTAGAATAAATAGTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACg                                  <  2:485296/238‑1 (MQ=255)
                                                                                                                                                                                                  cttgtccttAATGAAGGTTAAATAAATTGTTGCCGACGGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTCCGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGGACCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGGCGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCa                                <  1:941156/239‑1 (MQ=255)
                                                                                                                                                                                                  cttgaccttAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCt                                                                                                                            >  1:1242036/1‑147 (MQ=255)
                                                                                                                                                                                                     gaccttAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGa                              >  2:1124344/1‑238 (MQ=255)
                                                                                                                                                                                                     gaccttAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCCCGATGCCGGGATTGAAGCTGGAACCGTAACGCAGa                              >  2:641926/1‑238 (MQ=255)
                                                                                                                                                                                                      ttttatggtaaGGTTAAATAAATTTTCGGCGGTTTAAGAACGTGTTTGTTTG‑C‑GTT‑CATCCGTTGCGTTTTGATGAGCGGGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGCCCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGGCGGCTTTCTCGCCAGCAGGCCTATCGCATTCTTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACt                            <  1:403545/230‑1 (MQ=255)
                                                                                                                                                                                                        tttatgtaaGTTAGATTAAATTTTCGCCACCTGAGAAACGGATTTGCTAC‑C‑GTG‑CCCCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCa                          <  1:634542/232‑1 (MQ=255)
                                                                                                                                                                                                        tgtAAAGAAGGTTAAAAAAATATTCGGCGGCTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCTGTCCGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTTCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGGCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCa                          <  1:732500/237‑1 (MQ=255)
                                                                                                                                                                                                        cttTATGAAGGTAGAATAATTTTTCGCCGACTGAAGAACGGATTTTCTCC‑C‑GTT‑CCCCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCa                          <  1:295803/239‑1 (MQ=255)
                                                                                                                                                                                                          tAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATc                        <  2:392780/239‑1 (MQ=255)
                                                                                                                                                                                                           aaTGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCTTGAAGCCGTGGAAAGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGTTATATTTCTTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTTTTCGGGATGCCGGAATTGAAGGTGGAACCGTAAccggacttaacc                        >  1:1044154/1‑227 (MQ=255)
                                                                                                                                                                                                             tGAAGGTAGAATAAATATTCGCCGACTGAATAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTc                     <  2:220254/239‑1 (MQ=255)
                                                                                                                                                                                                             tGAAGGTAAAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTc                     <  2:717076/239‑1 (MQ=255)
                                                                                                                                                                                                              tgaggttatataaattTTCCGCGGCTGAAGAACGGATTTCCCAC‑C‑CGT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCa                    <  1:910543/230‑1 (MQ=255)
                                                                                                                                                                                                               agggTAGAAAAAATATTCGCCGGCTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCat                   <  2:330410/237‑1 (MQ=255)
                                                                                                                                                                                                                aGGTAAAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCat                   <  2:881453/238‑1 (MQ=255)
                                                                                                                                                                                                                     gAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCAGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCGCGCCGGGGGGGGCGGCTTTCTCGCCCGCCGGCCTATTCTCTTATTCGCGGTGACGGTATTTAAACTGTAACCGTAACGcgacctctccctctaaattta             >  1:677486/1‑219 (MQ=255)
                                                                                                                                                                                                                      aataaataTTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTaa            >  2:910543/1‑239 (MQ=255)
                                                                                                                                                                                                                        taaataTTCGCCGACTGAAGAACGGATTTTCTCC‑C‑GTT‑CCCCCGTTACGTTTTGATGGGCGTGAAGCCGGTGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAgg          <  2:727294/239‑1 (MQ=255)
                                                                                                                                                                                                                           atatTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCCGCAGGCCTATCGCATTATTCGCGTTGCCGGTATTTAAGCTGGAACCGTAACGCAGCACCATCCCCAAATGGTAAGGCac       >  1:330410/1‑238 (MQ=255)
                                                                                                                                                                                                                           atatTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCa        >  2:435635/1‑238 (MQ=255)
                                                                                                                                                                                                                             atTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCCCGATGCCGGTATTGAAGCTTGAACCTTAACGCAGcctcatcctcatc                  >  2:403545/1‑225 (MQ=255)
                                                                                                                                                                                                                                cGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CCCCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTTCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTg  <  2:165354/239‑1 (MQ=255)
                                                                                                                                                                                                                                cGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTTTCGCATTATTCCCGCTGCCGGGATTGAAGCTGGAACCGTAAGGCAGAATCATCTCCATTTGTTAAGGCATGCTTg  >  1:588167/1‑239 (MQ=255)
                                                                                                                                                                                                                                cGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCtt   >  2:354369/1‑238 (MQ=255)
                                                                                                                                                                                                                                cGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTg  >  2:737341/1‑239 (MQ=255)
                                                                                                                                                                                                                                cGCCGACTGAAGAACGGATTCTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGCTGCCGGTATTGCAGCTGGAACCGTAACGCAGACTCATACTCATCTGTTAAggaaatcttg  >  1:164268/1‑231 (MQ=255)
                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                 
ATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTAC‑C‑GTT‑CACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTG  >  NC_000913/4542000‑4542462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A