Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F9 I0 R1
|
260 |
102.5 |
2178490 |
93.2% |
2030352 |
226.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,104,208 |
A→G |
17.9% |
G86G (GGA→GGG) |
csgB → |
curlin nucleator protein, minor subunit in curli complex |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,104,208 | 0 | A | G | 17.9%
| 166.6
/ 8.2
| 69 | G86G (GGA→GGG) | csgB | curlin nucleator protein, minor subunit in curli complex |
| Reads supporting (aligned to +/- strand): ref base A (17/38); new base G (11/2); total (29/40) |
| Fisher's exact test for biased strand distribution p-value = 9.58e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TTATGATGTTAACAATACTGGGTGCGCCTGGGATTGCAGCCGCAGCAGGTTATGATTTAGCTAATTCAGAATATAACTTCGCGGTAAATGAATTGAGTAAGTCTTCATTTAATCAGGCAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTACACAGT‑ATGGTACTCAAAAAACGGCAATTGTAGTGCAGAGACAGTCGCAAATGGCTATTCGCGTGACACAACGTTAATTTCCATTCGACTTTTAAATCAATCCGATG > NC_000913/1103970‑1104436
|
ttatGATTTTAACAATACTGGGTGCGCCTGGGATTGCAGCCGCAGCAGGTTATGATTTAGCTAATTCAGAATATAACTTCGCGGTAAATGAATTGAGTAAGTCTTCATTTAATCAGGCAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGga < 1:718908/239‑1 (MQ=255)
ttttaaaaTTCTGGTTTCGCCTGGGATTGAAGCCGCAGGAGGTTATGATTTAGCTAATTCAGAATATAACTTCGCGGTAAATGAATTGAGTAAGTCTTCATTTAATCAGGCAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATtat < 2:1006801/232‑1 (MQ=255)
cAATACTGGGTGCGCCTGGGATTGCAGCCGCAGCAGGTTATGATTTAGCTAATTCAGAATATAACTTCGCGGTAAATGAATTGAGTAAGTCTTCATTTAATCAGGCAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCtt < 1:331421/239‑1 (MQ=255)
attcTGGTTGCGCCTGGGATTGCAGCCGCAGCAGGTTTTGATTTTGCTAATTCAGAATATAATCTCGCGGTAAATGAATTGAGTAAGTTTTCATTTAATCAGGCAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGc < 2:534910/236‑1 (MQ=255)
attcTGGGTGCTCCTGGGATTGCCGGCGCAGAAGGTTTTGATTTAGCTAATTCAGAATATAACTTCGCGGTAAATGAATTGAGTAAGTCTTCATTTAATCAGGCAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTCTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGc < 2:435583/236‑1 (MQ=255)
attatgggttgcgcTGGGATTGCAGCCGCAGCAGGTTATGATTTAGCTAATTCAGAATATAACTTCGCGGTAAATGAATTGAGTAAGTCTTCATTTAATCAGGCAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGc < 2:248422/226‑1 (MQ=255)
aTACTGGGGGCGCCTGGGATTGCAACCGCAGCAAGTTATGATTTAGCTAAATCATAATTGAACTTCGAGGTAAATGAATTGAGTAAGGCTTCATTTAATCAGGAAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGATCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGc < 1:502070/239‑1 (MQ=255)
tGCGCCTGGGATTGCAGCCGCAGCAGGTTATGATTTAGCTAATTCAGAATATAACTTCGCGGTAAATGAATTGAGTAAGTCTTCATTTAATCAGGCAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑GTTTTTCGCAAGAAGGGAGTAGCAA‑CCAGGCAAAAATTGACCAGGAAGGAGATTAT‑AACCTTGGATATAATg > 1:688762/1‑239 (MQ=255)
ccTGGGATTGCAGCCGCAGCAGGTTATGATTTAGCTAATTCAGAATATAACTTCGCGGTAAATGAATTGAGTAAGTCTTCATTTAATCAGGCAGCCATAATTGGTCAAGATGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCCGGCAAAGCTTGACCAGACCGGGGATTAT‑TACCCTgactacacttgtcc > 1:162115/1‑226 (MQ=255)
ggATTGCAGCCGCAGCAGGTTATGATTTAGCTAATTCAGAATATAACTTCGCGGTAAATGAATTGAGTAAGTCTTCATTTAATCAGGCAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAAATTTTTGCGG‑GTGTTGGGCAAGAAGGTAGTTGGAACCCGGACAAAAATTGTCCA‑ACAAGGGGTTAT‑AAACTTGCATATAATTATCaaggg > 2:854352/1‑235 (MQ=255)
ttGCAGCCGCAGCAGGTTATGATTGAGCTAATTCAGAATATAACTTCGCGGTAAATGAATTGAGTAAGTCTTCATTTAATCAGGCAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCggg < 1:590784/238‑1 (MQ=255)
gCCGCAGCAGGTTTGGATTTAGGTAATTCAGAATATAACTTCGCGGTAAATGAATTGAGTAAGTCTTCATTTAATCAGGCAGGCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTg < 2:225899/238‑1 (MQ=255)
gcagcaGGTTATGATTTAGCTAATTCAGAATATAACTTCGCGGTAAATGAATTGAGTAAGTCTTCATTTAATCAGGCAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGCGAGGCTCAAAACTTTTGGCGG‑TTGTTGTGCCAGAAGGGAGAGGCAA‑CCGGGCAACGATTTACCAGAGAGGAGATTAA‑AAACATCCCTAAATTGaaaaaacaggaaggggcaa > 2:587269/1‑221 (MQ=255)
ttATGAATTAGCTAAATCAGAATCTAACTTCGCGGTAAATGAATTGAGTAAGTCTTAATTTAATCAGGCAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGGAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGGCAGGGGATTAT‑AACCTTGCATATATTGATCAGGCGGGCATTGCCAACGATGc < 1:820117/237‑1 (MQ=255)
tAGCTAATTCAGAATATAACTTCGCGGTAAATGAATTGAGTAAGTCTTCATTTAATCAGGCAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGGAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGGGATTAT‑AACCTTGCATATTATGATCCGGCGGGCAGGGCCAAAGATGCCAGTAtttt > 1:991890/1‑237 (MQ=255)
aGCTAATTCAGAATATAACTTCGCGGTAAATGAATTGAGTAAGTCTTCATTTAATCAGGCAGCCACAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTTGCGG‑GTGTTGCGCAAGAAGGTAGTAGGAA‑ACGGGCAAAGATTGTCCAGACAGGAGATTAT‑AAACTTTCATCTATTTATCAGGCGGGGCGTGCCAACGAAGCCAGAATTTca > 1:991351/1‑237 (MQ=255)
tAATTCAGAATATAACTTCGCGTGAAATGAATTTAGTAAGTCTTCATTTAATCAGGCAGCCATAATTGGTCAAGCTGGGACTAAGAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAg < 1:1080352/239‑1 (MQ=255)
tAATTCAGAATATAACTTCGCGGTAAATGAATTGAGTAAGTCTTCATTTAATCAGGCAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCaa < 1:774344/238‑1 (MQ=255)
ttCAGAATATAACTTCGCGGTAAATGAATTGAGTAAGTCTTCATTTAATCAGGCAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCCCAAAACTTTTGGCGG‑TTGTTTGGCAAGAAGGGAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGGGATTAT‑AACCTTGCATATTTTGATCAGGCGGGCAGGGCCAAAGAGGCCAGAATTTCCCAAGGTg > 1:581691/1‑239 (MQ=255)
aaTATAACTTCGCGGTAAATGAATTGAGTAAGTCTTCATTTAATCAGGCAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATta < 1:386444/175‑1 (MQ=255)
atatAACTTCGCGGTAAATGAATTGAGTAAGTCTTCATTTAATCAGGCAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTa < 1:718005/237‑1 (MQ=255)
cgcgGTAAATGAATTGAGTAAGTCTTCATTTAATCAGGCAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AAACTTGCATATATTGGTCAGGCGGGCAGTGCCAACCATGCCAGGAATTGCCAAGGTGC‑TTATGGTGATACtt > 1:740759/1‑238 (MQ=255)
ttaaTGATTTGTGTAAGTTTTCATTTAATCAGGCAGCCATAATTGGGCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACTTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGc < 2:416500/233‑1 (MQ=255)
gAGTAAGTCTTCATTTAATCAGGCAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGGAAGAAGGGAGTAGCAA‑ACAGGCAAAGATTGACCAGACAGGGGATTAT‑AAACTTTCATATATGGATAAGGCGGGAGGGGCCAACGATGCCAGTATTTCGCAAGGGGC‑TTATGGTATTaatcggttggttttccctt > 1:416500/1‑221 (MQ=255)
gAGTAAGTCTTCATTTAATCAGGCAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGa < 1:854352/239‑1 (MQ=255)
tCTTCATTTAATCAGGCAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTACCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGc < 1:772992/218‑1 (MQ=255)
ttCATTTAATCAGGCAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGGGG‑TTGTTTCGCCAGAAGGTAGGAGCAA‑ACGGGCAAAGATTTGCCAGACAGGGAGTTAT‑AAACATGCATATATTGAACAGGGGGGCAGAGGCAACGATGTCCGTATTTTGCCAAGGGG‑TTATGGTAATAATGA‑GATAAAAATCCAaaaaagatatg > 2:453702/1‑232 (MQ=255)
aTCAGGCAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTTGCGG‑GTGTTTGGCAAAAAGGGAGTAGCCA‑CCGGGGAAAGATTGACCAGAAAGGGGATTATAAACCTGGCATA‑ATTGATCCAGCGGGCAGGGGCAACGATTCCCGCATTTCGTCAGTGGCTTTATGGGAA‑AAGCC‑GATGATTATCCACAAA‑gggtttcgggaaaaa > 2:42579/1‑226 (MQ=255)
aTCAGGCAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑GTGTTGCGCAAGAAGGGAGGAGGAA‑CCGGGCAAAAATTTACCAGACAGGGGGTTAT‑AACCATGCATATATTTATCAGGCGGGGAGTGGCCACCATGCCAGCATTTCGCCAAGGGG‑TTATGGGGAATCTGC‑GCGGATTATccccgtcttttttaaacaacta > 2:772992/1‑219 (MQ=255)
cAGGGAGCCATAATTGGGCAAGCGGGGACTAATAATAGGGCTCAGTTACGGCAGGGAGGGTCAAAACTTTGGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGc < 2:162115/239‑1 (MQ=255)
acccATAATGGGTCAAGCTGGGCCTAATAATAGTGCGCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGT‑ATAAAGCAAata < 2:991351/236‑1 (MQ=255)
cATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAata < 1:453702/236‑1 (MQ=255)
aTAATTGGTCAAGGTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTa < 1:316927/238‑1 (MQ=255)
ttaTTTGTCAAGGTGGGACTAATAATAGGGCCCAGGTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTaca < 2:675112/237‑1 (MQ=255)
ttaTTGGTCAATGTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTAAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTaca < 2:255173/237‑1 (MQ=255)
tAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTaca < 1:42579/239‑1 (MQ=255)
tAATTGGTCAAGCGGGGATTAAAAATGGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTaca < 2:333720/239‑1 (MQ=255)
tAAGTGGGCAAGCTGGGACTAATAATAGTGCTCAGTGACGGCAGGGAGGCTCAAAACGTATGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCTAGAAA‑GGTTCTGGTAATAAAGCAAATATTaca < 1:215688/239‑1 (MQ=255)
tCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTTC‑GATGATTTTCCAGAAA‑GGGTCTGGTAATAAAggcaatttttacccgtaat > 1:326573/1‑221 (MQ=255)
aGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGGGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGGATTTTGCAAGGGGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGGAATAAAGCAAATATTACACAGT‑ATGGTa > 1:625596/1‑239 (MQ=255)
ataataGTGCTCAGTTACGGCAGGGAGGCTCAAAACATTTTGCGG‑GTGGTTCGCCCAGAGGGAATAGCAA‑CCGGGCAAAAATTGACCAGACAGGCGGATTT‑GACACTGCATATATTTAACTAGGGGGCAGGGGCCACAAGTCCCGCCTTTCACACTGTGG‑TTTTGGTCAATCTGCAGCAGATTA‑CCAGAAA‑AGTTTTAGGAATAAAAGAAAAAATACACAGT‑Attagaaaaaaaaaaag > 2:30053/1‑224 (MQ=255)
taGTGCTCAGTTACGGCAGGGAGGATCAAAACATTTGGCAG‑TTGTTGCGCAAGAAGGTAGGAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTACACAGT‑ATGGTACTCAAAAAACGGCaa < 1:203881/239‑1 (MQ=255)
tGCGCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATAtt < 1:991540/208‑1 (MQ=255)
gCTCAGTTTCGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTTGTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTACACAGT‑ATGGTACTCAAAAAACGGCAATTGt < 2:154173/239‑1 (MQ=255)
cTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGGGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTTCACAGT‑ATGGTAACCCAAAAACGGCAATTGTa > 1:729471/1‑239 (MQ=255)
ggCAGGAGGGCTTAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTACACAGT‑ATGGTACTCAAAAAACGGCAATTGTAGTGCAgaga < 2:326573/239‑1 (MQ=255)
gggAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGGAGGAGCAA‑CCGGGCAAAGATTGACCCGACAGGAGATTAT‑AACCTTGCATATATTGATCAAGCGGGCAGGGCCAACGATTCCACTATTTTCCCAGGGGC‑TTATGGGAAAACTCG‑GCTGGTTTTCCACAAA‑AGTTTTGGGAATAAAACAAAAATTACACCAT‑ATGTGACTCCAAAAACCGCAAATTTAGAGcgaaaaaaaa > 2:698502/1‑230 (MQ=255)
gAGGCTAAAAACTTTTGGCGGTTTGTTG‑GCAAGAAGGGAGTAGCAA‑CCGGGCAAAAATTGGACCGACCGGGGGTTTT‑AAACTTGCATATATTGATCAGGCGGGCAGTGGCAAAGATGGCAAGATTTTGCCAGGGGC‑TTTTTGGTATAATTG‑GATTGGTATCCCGAAAGGGTTCTGGAAAAAAACCAAAAATTAC‑CAGTAATGTTCCTAAAAAAAAggaatgttaaggaagaaaaaaaac > 2:835602/1‑217 (MQ=255)
cttaaaaCTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATGAGGCGGGCAGTGCCAACGATGCCAGTATTGCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTACACAGT‑ATGGTACTCAAAAAACGGCAATTGTAGTGCAGAGACAGTCGCaa < 2:1072418/235‑1 (MQ=255)
cTCAAGACTGTTGGCGG‑TTGTTGGGCAATAAGGTAGTAGCAA‑GCGGGAAAAGATTGACCAGACGGGGGATTAT‑AACGTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGTTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAACAAATATTACACAGT‑ATGGTACTCAAAAAACGGc < 1:1055342/213‑1 (MQ=255)
cTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATTGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTTGTAATAAAGCAAATATTACACAGT‑ATGGTACTCAAAAAACGGCAATTGt > 1:155679/1‑219 (MQ=255)
cTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTAGTAATAAAGCAAATATTACACAGT‑ATGGTACTCAAAAAACGGCAATTGt < 2:155679/219‑1 (MQ=255)
ttGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTACACAGT‑ATGGTACTCAAAAAACGGCAATTGTAGTGCAGAGACAGACGCAAATGGCTATTcg > 1:441463/1‑239 (MQ=255)
ttGGCGG‑GTGGTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGGCAGGGGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTAATTCGCAAGGTGC‑TTATGTGAATACTGC‑GATGATTATCCAGAAG‑AGTTCTGGGAATTAAGCAAATATTACACAGT‑ATGGTACTCAAAAAACGGCAATTGCAGGCAAGATACAAACACAAAAGGCTAATcg > 2:1044942/1‑239 (MQ=255)
tgttgCGCAAGAAGGGTATAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCAGATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATTCTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTACACAGT‑ATGGTACTCAAAAAACGGCAATTGTAGTGCAGAGACAGTCGCAAATGGCTATTCGCGTGaca < 2:688762/238‑1 (MQ=255)
gtttCGCAAAAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTACACAGT‑ATGGTACTCAAAAAACGGCAATTGTAGTGCAGAGACAGTCGCAAATGGCTATTCGCGTGAcaca < 2:625596/239‑1 (MQ=255)
agaagGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGc < 2:466591/153‑1 (MQ=255)
agaagGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGc > 1:466591/1‑153 (MQ=255)
agCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTACACAGT‑ATGGTACTCAAAAAACGGCAATTGTAGTGCAGAGACAGTCGCAAATGGCTATTCGCGTGACACAACGTTAATTTCCATTCg < 1:587269/238‑1 (MQ=255)
aa‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTACACAGT‑ATGGTACTCAAAAAACGGCAATTGTAGTGCAGAGACAGTCGCAAATGGCTATTCGCGTGACACAACGTTAATTTCCATTTGACtt > 1:70634/1‑239 (MQ=255)
aacGGGGAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTACACAGT‑ATGGTACTCAAAAAACGGCAATTGTAGTGCAGAGACAGTCGCAAATGGCTATTCGCGTGACACAACGTTAATTTCCATTCGACttt < 1:698502/237‑1 (MQ=255)
ccGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTACACAGT‑ATGGTACTCaaaaa > 2:362751/1‑166 (MQ=255)
ccGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTACACAGT‑ATGGTACTCaaaaa < 1:362751/166‑1 (MQ=255)
ccGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTAACCAGGAA‑GGGTCTGGTAATAAAGCCAATATTACACAGG‑ATGGTACTCAGAAAACGGCAATTGAAGTGCAGAGACAATCGCACAAAGAACATCGCGGGACACAACGATAATTTCCATTCGACtttt > 2:380036/1‑239 (MQ=255)
ccGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATACCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTACACAGC‑ATGGTATTCAAAAAACGGCAATTGTAATGCCGAGACAGTCGCAAATGGCCACTCACGTGAAAAAAGGATAATTTCCATTGGaactta > 2:441028/1‑234 (MQ=255)
ggCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTACACAGT‑ATGGTACTCAAAAAACGGCAATTGTAGTGCAGAGACAGTCGCAAATGGCTATTCGCGTGACACAACGTTAATTTCCATTCGACTTTTaaa > 1:241328/1‑239 (MQ=255)
gCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTACCCAGT‑ATGGTACTCAAAAAACGGCAATTGTAGCGCAGAGACAGTCGCCAATGGCTATTCGCGTGCCACAACGTTAATTTCCATTCGACTTTTaaa > 1:1015033/1‑238 (MQ=255)
aaaaGGTTGACCCGACAGGAATTTAT‑AACCTTTCATATTTTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTACACAGT‑ATGGTACTCAAAAAACGGCAATTGTAGTGCAGAGACAGTCGCAAATGGCTATTCGCGTGACACAACGTTAATTTCCATTCGACTTTTAaat < 2:441463/237‑1 (MQ=255)
gACCGGAAAGGAGATTAT‑AACCTTGCATATTTTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTACACAGT‑ATGGTACTCAAAAAACGGCAATTGTAGTGCAGAGACAGTCGCAAATGGCTATTCGCGTGACACAACGTTAATTTCCATTCGACTTTTAAATCAATCCGAt < 2:991890/239‑1 (MQ=255)
aCCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGCTGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTACACAGT‑ATGGTACTCAAAAAACGGCAATTGTAGTGCAGAGACAGTCGCACATGGCTATTCCCGAGACACAACAATAATTTCCATTCGCCTTTTCACTCAATCCGATg > 1:930723/1‑239 (MQ=255)
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TTATGATGTTAACAATACTGGGTGCGCCTGGGATTGCAGCCGCAGCAGGTTATGATTTAGCTAATTCAGAATATAACTTCGCGGTAAATGAATTGAGTAAGTCTTCATTTAATCAGGCAGCCATAATTGGTCAAGCTGGGACTAATAATAGTGCTCAGTTACGGCAGGGAGGCTCAAAACTTTTGGCGG‑TTGTTGCGCAAGAAGGTAGTAGCAA‑CCGGGCAAAGATTGACCAGACAGGAGATTAT‑AACCTTGCATATATTGATCAGGCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGC‑TTATGGTAATACTGC‑GATGATTATCCAGAAA‑GGTTCTGGTAATAAAGCAAATATTACACAGT‑ATGGTACTCAAAAAACGGCAATTGTAGTGCAGAGACAGTCGCAAATGGCTATTCGCGTGACACAACGTTAATTTCCATTCGACTTTTAAATCAATCCGATG > NC_000913/1103970‑1104436
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
