Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F9 I0 R1
|
260 |
102.5 |
2178490 |
93.2% |
2030352 |
226.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,093,736 |
T→G |
21.0% |
V90G (GTG→GGG) |
hisB → |
histidinol‑phosphatase and imidazoleglycerol‑phosphate dehydratase |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,093,736 | 0 | T | G | 21.0%
| 134.3
/ 4.6
| 75 | V90G (GTG→GGG) | hisB | histidinol‑phosphatase and imidazoleglycerol‑phosphate dehydratase |
| Reads supporting (aligned to +/- strand): ref base T (39/16); new base G (10/7); total (52/23) |
| Fisher's exact test for biased strand distribution p-value = 3.83e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CCCTGATTAGCGAACCGCCGAGTGATTTTCAGGTGGACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAA‑GCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAGCAACTCACCAGACGTGACCGTTACGCT > NC_000913/2093505‑2093974
|
cccTGATTAGCGACCGGGCGAGTGATGTGCAGGTGGACCGTTTTGATAAACGCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAA‑GCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGAt < 1:386632/238‑1 (MQ=255)
aTTAGCGAACCGCCGAGTGATTTTCAGGTGGACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAA‑GCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCCCAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACCGTTTGATTAAGGGCTGATTTGTc > 1:899924/1‑238 (MQ=255)
aTTAGCGAACCGCCGAGTGATTTTCAGGTGGACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAA‑GCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCCCAACCTG‑ATGATGCAGATCTTCACCTCCCAA‑GGCGTACAGTTTGATTAAGGGCTGATTTTTc > 1:890641/1‑238 (MQ=255)
aTTAGCGAACCGCCGAGTGATTTTCAGGTGGACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAA‑GCTGCAAAAAGCGGGC‑TACAAGCTGGCGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGACCTTCACCTCGCAA‑GGCGTACAGTTTGCAGAACTGCTGATTTGTcc > 1:704564/1‑239 (MQ=255)
ttgccgaccccgcgggtgtTTTTCAGGTGGACCGTTTGGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAA‑GCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCg < 2:385404/224‑1 (MQ=255)
cGAACCGCCGAGTGATTTTCAGGTGGACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAA‑GCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCCCAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGGGCTGATTTTGCCGccc > 2:258114/1‑236 (MQ=255)
cGAACCGCCGAGTGATTTTCAGGTGGACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAA‑GCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGCTTCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGGGCTGATTTGTCCGCAc > 1:1038548/1‑238 (MQ=255)
aaCCGCCGAGTGATTTTCAGGTGGACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAA‑GCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGACTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGGGCGGATTTGTCCGCGccc > 1:126556/1‑237 (MQ=255)
cgccgAGTGATTTTCAGGTGGACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAA‑GCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCCCA‑GGCGGATTTCGATGGCCCGCCCACCCTG‑ATGTTGCAGATCTTCACCTCGCAA‑GGCTTACAGTTTGATGAAGGGCTGGTTTGTCCGCACCTGcc > 1:151797/1‑238 (MQ=255)
cgccgAGTGATTTTCAGGTGGACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAA‑GCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGATGATTTTTCCGCACCTGcc > 1:927401/1‑238 (MQ=255)
cgccgAGTGATTTTCAGGTGGACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAA‑GCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCCCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGAGCTGATTTGTCCGCACCTGcc > 1:754464/1‑238 (MQ=255)
ttttCAGGTGGACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAA‑GCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGt > 1:796380/1‑239 (MQ=255)
ggggtggccttttttGAAAACCCCG‑CTTTGAACCCGGGGGTGACCCCGGAATGGCAGAA‑GCGACAAAAAGGGGGC‑TAAAAGCTGGGGATGATCACTAATGAGGTGGGTCTGGGAAAAAAAAGTTTCCCACA‑GGCGGATTTCGAGGGCCCGCACAACCTG‑ATGATGAAGATCTCCACCCCGCAA‑GGCGTACAGTTTGATGAAGTGCTGTTTTGTCCGCACCGGCCCGCCGATGAGTGCGa < 2:880110/228‑1 (MQ=255)
gACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAA‑GCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGGGCTGATTTGTCCGCACCTGCCCCCCGATGAGGGCGACTGCCg > 2:810774/1‑239 (MQ=255)
ttttGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAA‑GCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAg > 1:328238/1‑238 (MQ=255)
aaCTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAA‑GCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCCCAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACCGTTTGCTGAAGGGCGGATTTGTCCCCCCCCGCCCCCCGAGTAGGGGGACTGCCGAAACCCGaaaaaa > 2:950137/1‑236 (MQ=255)
cTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAA‑GCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCCCAA‑GGCGTAACGGTTGATGAAGTGCTGATTTGTCCGCCCCTGCCCGCCGCTGAGGGCGACTGCAGGAAACCGaaaagaaa > 2:602954/1‑234 (MQ=255)
cTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAA‑GCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACtgg > 1:603309/1‑239 (MQ=255)
ccccggggttgttccGGAAATGGTGAAGGCTGAAAAAGGCGGTC‑TACAAGCGGGGGATGACACCTAAGCAGTATGGTCTGGAAACACAAGTTTCCCCACG‑GGCGGATTTCGATGGCCCGCACACCCTG‑AGGAGGCAGCTCTTCCCCTCGAAA‑GGGGTACATTTTGATGAAGTGCTGTTTTCCCCGCCCCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGaa < 2:1038548/226‑1 (MQ=255)
cccGGGCGTAACCCCGGAACTGCGAAA‑GCTGAAAAAGGCGGGT‑AAAAAGCTGGTAATGATCATTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACG‑GGCGGATTCCGATGGCCCGCACACCCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGaa < 1:357124/237‑1 (MQ=255)
acgggggGTGACCCGGGACGTGCTGAA‑GC‑GGAAAAAGGGGGCAGAAGAGCGGGTGATGACCAATAAGCGGGATGGTCTTGAAACAAAAATTTCCCCAAA‑GGCGAATTCGGATGGCCGGCACACCGTG‑ATGATGCAGATCTTC‑CCCGGCAAGGGGGTACAGTTTGATGAAGGGCTGTTTTGTCCGCCCCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGaa < 2:867741/235‑1 (MQ=255)
ggCGTGATCCCGGAACTGCTGAA‑GCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGCTTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTa > 1:377543/1‑239 (MQ=255)
ggCGTGATCCCGGAACTGCTGAA‑GCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTa > 1:927538/1‑239 (MQ=255)
ggCGTGATCCCGGAACTGCTGAA‑GCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCCCTGAGTGCGACTGCCGTAAGCCCAAAGAaaaaacggggggaagtta > 2:299228/1‑225 (MQ=255)
ggCGTGATCCCGGAACTGCTGAA‑GCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGACTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGCTGAAGGGCTGATTTGTCCGCACCTGACCGCCGCTGAGTGCGACGGCCGTAAGCCGAAAGGAAAACTGGTGGAAcagta > 1:519446/1‑235 (MQ=255)
gATCCCGGAACTGCTGAA‑GCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTg > 1:292547/1‑238 (MQ=255)
gaaccggctgacggcgaaaaaaGGGGGC‑TAAAAGTTGGGTATGCCCACTAAGAGGGAGGGCCTGGGAACAAAAAGTTCCCCACG‑GGCGGATTCGGATGCCCCGCACAACTGG‑AGGATGCAGATCTTCCCCCCGAAG‑GGCGTACATTTGAAGGAAGTGTGGTTTTGCCCCCCCCGCCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGc < 2:899924/222‑1 (MQ=255)
ctgAA‑GCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑CTGATGCAGATCTTCCCCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGCTCAGTGCGACTGCCGTAAGCCGAAAGCAAAACTGGGGGAACGTTATCTGGCGGAGCAAACgca > 2:382430/1‑237 (MQ=255)
gCTGCAAAAAGCGGGT‑TAAAAGCGGGGTATGATCACTAATCAGGATGGTCTGGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCGCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCCCCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGAt < 1:950137/238‑1 (MQ=255)
cAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGCGGAACGTTATCTGGCCGAGCAAGCGATGGGTcgc > 1:583886/1‑237 (MQ=255)
aaaGCGGGC‑TAAAAGCGGGTGGTGAACAATAACCAGGATGGTCTTGAAACAAAAAGTTCCCCAAG‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTaa < 1:382430/239‑1 (MQ=255)
taaaaagacaagaaGGTGGTGATGATCAATAAGCAGGATGGTCTTGGAACAAAAAGTTCCCCACA‑GGCGGATTGCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTaa < 1:740663/227‑1 (MQ=255)
agacagttaaaaGTTGTTGATGATCACTAACCGGGGT‑GTCTTGGAAAAAAAAGTTTTCCACAGGGCGGATTGCGTGGGCCCGCAAACCGGG‑ATGTGGAAGTTCTTCCCCCCGAAG‑GGCGTACGTTTGGATGAAGTGCTGATTTGCCCGCCCCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTaa < 2:196591/227‑1 (MQ=255)
ggTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGGAAAACTGGTGGAACGTTATCTGGCTGAGCCAGGCAGGGAACCGGCCAAAAGTTAtggtgatgggg > 2:522222/1‑230 (MQ=255)
gTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGGGCGGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGGAAAACTGTGGGAACCGTTCCTGGCTGGGAAGGGGGGGGAAGGGCCTAACACTTTAGTGATTGGCg > 2:914027/1‑238 (MQ=255)
tgatgaTCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTAtgtg > 1:196591/1‑230 (MQ=255)
gatCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGGGGAACGTTATCTGGCTGAGCAAGCGATGGAACCGGCTAACAGTTAttgg > 2:740663/1‑223 (MQ=255)
atCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATcgcgc > 1:17217/1‑239 (MQ=255)
cTAATCAGGATGGTCTTGGCACACAACGTTTCACACA‑GGCGGATTTAGATGGCCCGCGCCACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGGCAGCCGAAAGAAAAACTGGCGGGCGGTTATCTGCCTGCGCAAACGATGGCGCGCGCTCACGATTATGAGATTGGGGATcgcgcaccc > 2:120718/1‑235 (MQ=255)
aTCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTAGTGGATTGGCGATGCGGcgaccgac > 1:1033833/1‑239 (MQ=255)
gtttttgaaaacaaaaTTTTCCCCCG‑GGCGTTTTCCGATGCCCCAC‑CAACCCGTATGTTGCATGTTTCCCCCCCGCAA‑GGCTTACAGTTTGATGAAGTGCGAATTTGCCCGCCCCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAAc < 2:867300/225‑1 (MQ=255)
tCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGGAAAACTGGGGGAACGTTATCTGGCTGAGCAAGGGAAGGATCGCGCTACAAGTATTGTGTTTGGGGATCGCGCGACCGAAATTCAACTgg > 2:792285/1‑239 (MQ=255)
cTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑GTGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCCCCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGGGGAACGTCTTATGGCTGAGAACGCGGTGGACCGCGCAAACCGCTATTGGATTGGGGTACCGGcgaccgaacatcacctgcg > 2:638537/1‑227 (MQ=255)
ttGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGGGATTGGCGATCGCGCGACCGACATTCAACTGGCg > 1:518261/1‑239 (MQ=255)
ttGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGCGGAACGTTATCTGGCTGGGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGCCATTCAACTGGCg > 1:608361/1‑239 (MQ=255)
ttGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGAACAGTTTGATGAAGTGCTGATTTGTCCGCACCCGCCCGCCGCTGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGGGGAACGTTATCTGGCTGAGCAAGCGATGGAACGCGCTAAACGTTATGGGATTGGAGATCCCGCGACCGACATTAAACAgggg > 2:182927/1‑237 (MQ=255)
gAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTg > 1:61212/1‑92 (MQ=255)
gAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTg < 2:61212/92‑1 (MQ=255)
acaAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGaaaa > 1:867300/1‑237 (MQ=255)
cagaGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGGGGTTGGGGGACGCGCCACCGCAATTAAACGGGGGGaaaaaag > 2:913915/4‑236 (MQ=255)
caAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAC‑GGCGTACAGTTTGATGAAAAGCTGATTTGTCCGCCCCTGCCCGCCGATTAGTGCGCATGCCGGAAGACGAAAGTAAAACTGGTGGAACGTTAGCTGGCGGAGCAAGCGATGGAACGCGCTAACGGTTAAGTGCTTAGCGATCGCGCGGCCCACAACCAAATCGCGGGAAACAt > 2:130162/1‑239 (MQ=255)
caAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACa > 1:1038866/1‑190 (MQ=255)
caAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGGGGAACGTTATCTGGCTGAGCACGCGATGGAACCGCCAAACAATTATGGGATTGGGGTTGGCGGGGCCGCAATTCAAATGGCGGGAAAAAt > 2:740481/1‑239 (MQ=255)
cccAGA‑GGCGGTTTCGGATGGCCCCAAAAACCTG‑TTGATGAAAATCTTCACCCCGAAA‑GGCGTACATTTGGATGAAGTGCTGATTTGCCCGCCCCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTa < 1:258114/239‑1 (MQ=255)
cccACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTcttgctcttatacacatctccgag > 1:717773/1‑215 (MQ=255)
cccACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGAAGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGCAAAACATGGGCAtt > 1:864551/1‑238 (MQ=255)
ca‑GGCGGTTTTCGATGGCCCGCACAGCCTG‑ATTGTGCAGATCCTCCCCTCGCAA‑GGCGTACAGTTTGATGAATTTCTGATTTTCCCGCCCCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTgg < 1:330176/239‑1 (MQ=255)
gggggttttGGAGGGCCCGCCAAACCTG‑ATGAGGCAGCTCTTCACCTCGAAA‑GGCGTACATTTTGATGAAGGGCTGTTTTGTCCGCACCGGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGtt < 1:336096/233‑1 (MQ=255)
gCGGATTTCGATGGCACCCCCAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTAGAGTTTGGTGAAGCGCTTGATTGTCCTCCACTGCCCGCCGCTGAGTGCGACTGCCGTAGGCCGAAAGTCAAACTGGGGGGAAGTTATCTGGTCGAGCAAGCGAAGGATCGCGTTACATGTTATGCAGTGGGCGACCGCGGGCCCGCCGTACAACAGGCGGGACACATgggactaacggataa > 2:267951/1‑227 (MQ=255)
gcccgacaacccTG‑GTGATGAAGTCTTTCCCCGCGCAG‑GGCGTCCGGTTTGATGAAGTGTTGTTTTGTCCGCACTGGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCt < 2:61078/148‑1 (MQ=255)
cccGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGGGCGACCGACATTCAACCTGCGGAAAACAAGGGCATTCCGGGTTTACGccagaccccca > 2:400433/1‑229 (MQ=255)
ctccacaCCCTG‑ATGATGCAGATCTTCCCCTGGCAG‑GGGGTCGTGTTGGATGAAGGTCTGTTTTGTCCGCCCCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACcgcg < 1:400433/235‑1 (MQ=255)
cggaacaACCGG‑AGGAGGCAGATCTTCACCCGGAAA‑GGCGTACAGTTTGATGAAGGGCTAATTGGCCCGCACCTGACCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACcgcg < 1:947396/234‑1 (MQ=255)
ccgccaaacttgatgtgcaaGATTTTCACCCCGCAG‑GGCTTCAAGTTTGATGAATGGCTGATTTGCCCGCACCGGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACcgcg < 1:702412/219‑1 (MQ=255)
ccTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTAtg > 1:61078/1‑158 (MQ=255)
gtg‑atgaGGAATATCTTCCACTCGCAG‑GGGGTTAAGTTGGAGTAGGGGGTGATTTGCCCGAACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACCGCGAAACCCTGaa < 1:522222/238‑1 (MQ=255)
cAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACCGCGAAACCCTGACCTGGCCAAt > 1:109041/1‑239 (MQ=255)
cAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACCGCGAAACCCTGAACTGGCCAAt > 1:1008830/1‑239 (MQ=255)
cTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACGGGTTTACGCCACGACCCCGAAACCCTGAACGGGCCAATAATTg > 2:854947/1‑239 (MQ=255)
cGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGACCa > 1:531058/1‑238 (MQ=255)
cGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGCCGATCGGGCGACGGACATTCAACTGGCGGAAAACATGGGCCTTACTGGTTTACGCTACGACCGCGAAACCCTGACCTGGCCAATGATggggcgtaac > 2:621668/1‑232 (MQ=255)
cgcggggtctACTGTTTGATGGTGGGTTGTTTGGCCCGCCCCTGCCCGCCGATGAGGGCGACTGCCGTAACCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAGCaa < 2:183308/230‑1 (MQ=255)
ccaagggCGTACGTTTGGATGAAGTTCTGATTTGCCCGCCCCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAGCaa < 1:257019/234‑1 (MQ=255)
cAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATAATTGGCGGACAAcc > 2:257019/1‑238 (MQ=255)
tgatgaAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACCCCGAAACCCTGAACTGCCCAATGATTGGGGAGAAAACCACCAGACGTGccc > 2:799919/1‑239 (MQ=255)
tGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGGGGGCAACTCACCAGACGGGACCGTTaaccc > 2:865198/1‑235 (MQ=255)
tGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCCACGACCGCGAAACCCTGAACTGGCCAATGATTGGGGCGCAACTACCCAGACGGAACCGTTACGc > 2:737814/1‑238 (MQ=255)
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CCCTGATTAGCGAACCGCCGAGTGATTTTCAGGTGGACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAA‑GCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTG‑ATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAGCAACTCACCAGACGTGACCGTTACGCT > NC_000913/2093505‑2093974
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A