Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F17 I0 R1 160 98.0 2214160 89.0% 1970602 222.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 956,640 A→C 13.4% intergenic (‑8/‑122) ycaO ← / → ycaP ribosomal protein S12 methylthiotransferase accessory factor/UPF0702 family putative inner membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913956,6400AC13.4% 218.7 / 4.9 97intergenic (‑8/‑122)ycaO/ycaPribosomal protein S12 methylthiotransferase accessory factor/UPF0702 family putative inner membrane protein
Reads supporting (aligned to +/- strand):  ref base A (48/31);  new base C (3/12);  total (51/46)
Fisher's exact test for biased strand distribution p-value = 4.62e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ATTCACCGAGTGCAGAAGCCAGCGCCGCTTTCTTGGTTGCGCCTTTACCGTTGGTAAAACACAGTGCGCACTCTTTGTCGCGAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGCATTTGATAAAGTGCCTTTTGATTTCCTTGGCGAAGTTGCACTACGTAGTCTTTATACCTTTGTACTGGTCTTTTTGTTC  >  NC_000913/956407‑956869
                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                       
tttCCCCGGGTGCAAAAGCCAGCGCCGCTTTCTTTGTTGCGCCTTTACCGTTGGGAAAACACAGGGCGCACTCTTTGTCGCGAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTa                                                                                                                                                                                                                                    <  2:786885/238‑1 (MQ=255)
   cACCGAGTGCAGAAGCCAGCGCCGCTTTCTTGGTTGCGCCTTTACCGTTGGTAAAACACAGTGCGCACTCTTTGTCGCGAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGACAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGCTAAATGTTTGCGTCATGAAAATCACTTAAGT‑c                                                                                                                                                                                                                                >  1:1033139/1‑239 (MQ=255)
       gAGTGCAGAAGCCAGCGCCGCTTTCTTGGTTGCGCCTTTACCGTTGGTAAAACACAGTGCGCACTCTTTGTCGCGAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAACCGAGCGATGGAATCTTCCAGAGCGGCACCTTT‑GCCGGGGTTAAATGTTTGCGGCTTGCAAATACTTTTAGT‑CGTAc                                                                                                                                                                                                                            >  1:669598/1‑239 (MQ=255)
         gTGCAGAAGCCAGCGCCGCTTTCTTGGTTGCGCCTTTACCGTTGGTAAAACACAGTGCGCACTCTTTGTCGCGAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGACGCGAGCGATGGAATCTTCCAAAGCGGAATCTTT‑GCCGGGGATAAATGTTTTCGTCATTAAAATAACTTTatcgttaagg                                                                                                                                                                                                                           >  2:322221/1‑230 (MQ=255)
         gTGCAGAAGCCAGCGCCGCTTTCTTGGTTGCGCCTTTACCGTTGGTAAAACACAGTGCGCACTCTTTGTCGCGAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACgg                                                                                                                                                                                                                          >  1:492221/1‑239 (MQ=255)
         gTGCAGAAGCCAGCGCCGCTTTCTTGGTTGCGCCTTTACCGTTGGTAAAACACAGTGCGCACTCTTTGTCGCGAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGCCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCCGAGCGGCATCTTT‑TCCGGGGATAAATGGTTGCGTCATGAAAAGACCTTTAgcggtccgg                                                                                                                                                                                                                           >  2:240396/1‑231 (MQ=255)
                ggCCCGCGCCGCTTGTTTGGCGGTGGCTTTCCCGTTGGTAAAACACAGTGGGCGCTTTTTGGCGCGAATATGTACCGACCGTGCGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGCGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAgcg                                                                                                                                                                                                                    <  2:76968/237‑1 (MQ=255)
                aGCCAGCGGCGCTTTCTTGGTTGCGCCTTTACCGTTGGTAAAACACAGTGCGCACTCTTTGTCGCGAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAgcg                                                                                                                                                                                                                    <  1:839289/238‑1 (MQ=255)
                  ccagggtgtcTTTGTTGTTTGCGCTCTTACAGTGATTAAAAAGCAGTGCGCACTCTTTGTCGCGAAGAGGTCCAGACCAGACTGTCGGCACGGGATTCAGCGAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCCGGAAGCGAGCGATTGAATCGTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAgcg                                                                                                                                                                                                                    <  2:667661/227‑1 (MQ=255)
                  ccAGCGCGGCTTTCTTGGTTGCGGCTTTCCCGTTGGTAAAACACAGTGCGCATTCTTTGTCGCGAATATGTACAGTCCAGACGTTAGGGACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTGTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCGGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAgcgcg                                                                                                                                                                                                                  <  2:669598/238‑1 (MQ=255)
                    aGCGCCGCTTTCTTGGTTGCGCCTTTACCGTTGGTAAAACACAGTGCGCACTCTTTGTCGCGAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCaa                                                                                                                                                                                                               >  1:948592/1‑239 (MQ=255)
                    aGCGCCGCTTTCTTGGTTGCGCCTTTACCGTTGGTAAAACACAGTGCGCACTCTTTGTCGCGAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGC‑AGTACGGAAAGCGCGCaa                                                                                                                                                                                                               >  1:29638/1‑239 (MQ=255)
                       gccgcTTTCTTGGTTGCGCCTTTACCGTTGGTAAAACACAGTGCGCACTCTTTGTCGCGAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCaa                                                                                                                                                                                                               <  1:1100432/236‑1 (MQ=255)
                         cgcTTTCTTGGTTGCGCCTTTACCGTTGGTAAAACACAGTGCGCACTCTTTGTCGCGAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAataata                                                                                                                                                                                                          <  2:126020/239‑1 (MQ=255)
                                 tGGTTGCGCCTTTACCGTTGGTAAAACACAGTGCGCACTTTTTGTCGCGAATATGTACAGGCCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGtttt                                                                                                                                                                                                  <  1:1021502/239‑1 (MQ=255)
                                          cTTTACCGTTGGTAAAACTCAGTGCGCAGTCTTTGTCGAGAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑aaa                                                                                                                                                                                         <  1:46541/238‑1 (MQ=255)
                                                  ttGGTAAAACACAGTGCGCACTCTTTGTCGCGAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAataata                                                                                                                                                                                                          >  2:610548/1‑214 (MQ=255)
                                                  ttGGTAAAACACAGTGCGCACTCTTTGTCGCGAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAataata                                                                                                                                                                                                          <  1:610548/214‑1 (MQ=255)
                                                    ggTAAAACACAGTGCGCACTCTTTGTCGCGAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGGTAAATGTTTTGGTCATGAAAATAACTTTTGT‑CGTACGGGAAGGGGGCAATAAAACGGGGTTTTTTCC‑AAAGgggcatcca                                                                                                                                                                               >  2:555844/1‑233 (MQ=255)
                                                              cgtggccACTTTTTGTCGGGAATTTTGACAGACGAGGAGTTAGACCCGGGTTTCTCCCAGGCGGTCTCTGCAATCTGAAAGCCGAGGTCGGAAAGTTTTTGCGGGAAGGGAGCGATGGAATCTTCCAGAGCGGCATCTTG‑CCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATCGGGGTTTTATCTA‑AAAGGCGCTATCACCGCCGCCATg                                                                                                                                                                    <  2:582159/233‑1 (MQ=255)
                                                               gTGCGCACTCTTTGTCGCGAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGACGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATCAATGTTTGGGTCCGTAACATCCCTTTTTT‑GGTACGGAAAGCCCGCCATAATACGGGTTTTTACTC‑AAAGGCGCTTCCACCcccgcccgg                                                                                                                                                                    >  2:477112/1‑235 (MQ=255)
                                                               gTGCGCACTCTTTGTCGCGAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGAGAAATGTTTGCGTCATGAAAATCACTTTATT‑CGTACGGAAAGCGCGCAATAATACGGGGTTTATCTC‑AAAAGCGCAATCACCgccacccagc                                                                                                                                                                   >  2:973801/1‑235 (MQ=255)
                                                               gTGCGCACTCTTTGTCGCGAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GACGGGGATAAATGTTTGCGCCCTGAAAATCACTTTACT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATTCT‑AAAGGCGCTATAACcgccgcaagac                                                                                                                                                                   >  2:576260/1‑234 (MQ=255)
                                                                tGCGCACTCTTTGTCGCGAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑ACAGGCGCTATCACCGCCGCCATAcc                                                                                                                                                                  >  1:599106/1‑239 (MQ=255)
                                                                tGCGCACTCTTTGTCGCGAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGcc                                                                                                                                                                  >  1:654562/1‑239 (MQ=255)
                                                                       tctTTGTCGCGAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAgcg                                                                                                                                                                                                                    <  1:549465/183‑1 (MQ=255)
                                                                          ttGTCGCGAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAGTACGGGTTTTATCTC‑AAAGGCGCTATAACCCCCGCCATGCCGAGGAACGGt                                                                                                                                                        >  2:401398/1‑239 (MQ=255)
                                                                                 gAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCCAGCCGATGAAACGTTGACTaa                                                                                                                                                 >  2:473971/1‑238 (MQ=255)
                                                                                 gAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATAACCGCCGCCATGCCGATTAACGGTTGAatat                                                                                                                                                 >  2:687055/1‑239 (MQ=255)
                                                                                 gAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATATTTGCGTCATGAAAATCACTTTTGC‑TGTACGGAAAgccagaactaatc                                                                                                                                                                                                          >  2:549465/1‑172 (MQ=255)
                                                                                        gaCAGACCAGGCGTTAGGGCGGGGATTGAGCCAGGGGGCCTTTTAAATTGGAAAGCCGAGGGTTGAAAGTTTTTGCTGGAAGGGAGCGATGGAATCTTCAAGGGCGGAATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTa                                                                                                                                          <  1:322221/238‑1 (MQ=255)
                                                                                         aaagaccggacGTTAGGCACGGGATTCAGCAAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAg                                                                                                                                         <  1:47244/237‑1 (MQ=255)
                                                                                             accagacGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGa                                                                                                                                     >  1:1079035/1‑239 (MQ=255)
                                                                                             accagacGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGa                                                                                                                                     >  1:789096/1‑239 (MQ=255)
                                                                                             accagacGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGa                                                                                                                                     >  1:173698/1‑239 (MQ=255)
                                                                                             accagacGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTACCggt                                                                                                                                     >  1:694918/1‑238 (MQ=255)
                                                                                             accagacGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCCCCATGCCGATGAACTGTTGAATATGCTTTTAGGGGa                                                                                                                                     >  2:837237/1‑239 (MQ=255)
                                                                                             accagacGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTAGCTC‑CAAGGCGCTATCACCGCCGCCATACCGATGAACTGTTAACAATGCTTTTAGGGGa                                                                                                                                     >  2:466107/1‑239 (MQ=255)
                                                                                                  acGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATaaa                                                                                                                                 >  1:857370/1‑238 (MQ=255)
                                                                                                  acGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAAc                                                                                                                                >  1:378261/1‑239 (MQ=255)
                                                                                                   ctttAGGCACGGGATTCAGCAGTGAGGCCTCTTCAATCTGAAATCGGAGGTCTGAAAGTTTTTGCTGGAAGCAAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CTTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAAcc                                                                                                                               <  1:896384/237‑1 (MQ=255)
                                                                                                    tggggggacggagttCAGCCGGGGGGCCCTTACAAGCGAAAAGCCGGGGGTGGAAAGTTTGTGCGGGAAGGGCGCGATGGAACTGTCCAGAGCGGCATCGTG‑GCCGGGGATAAATGTTTGCGTCAGGAAAATCACTTTAGT‑CGTACGGAAAGGGCGCAATACTACGGGTTTTAACTC‑AAAGGCGCGAGCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAAc                                                                                                                                <  2:1033139/224‑1 (MQ=255)
                                                                                                    gtgtggCACGGTATTCCGCCAGGAGGCCTTTTAAATCGGAAAGCAGAGTTCTGAAAGTTTTTGCGTGAAGGGAGGGATGGAATCTTCCAGAGTGGCATCTGT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCCTTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTCTCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAAc                                                                                                                                <  2:821098/233‑1 (MQ=255)
                                                                                                       aGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAgcg                                                                                                                                                                                                                    <  1:52973/151‑1 (MQ=255)
                                                                                                       aGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAgcg                                                                                                                                                                                                                    >  2:52973/1‑151 (MQ=255)
                                                                                                       aGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGCACGGAAACCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCCATCACCGCCGCCATGCCGACGAACTGTTGACTAAACTTTTAGCGGATAAACCACGt                                                                                                                           >  1:537237/1‑239 (MQ=255)
                                                                                                          ctctgtttgccgcaggtgtgCCTATTCAATCTGAAAGCCGGGGTTGGAAAGTTTTTGGTGGAGGCGGTCGATGGCATTTTCCAGCGGGGCATGTTT‑GCCGGGTAAAAATGTTGGGGTCATGAAAATCATTTTAGG‑CGTAGGGAAAGCGCGAAATAATCGGGGTTTTATCTA‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTaa                                                                                                                        <  2:375662/220‑1 (MQ=255)
                                                                                                          ctcgggtgtccggcAGGTGGCCTCTTAAAGTCAAAAGCCGGTGTCTGAAAGTTTTTGCGGGAGGGGAGTGTTGGAATCTTCCAGAGCGGCTTCTTT‑GCGGGGGATAAAGTTTTGCGGCATGAAAATCGCTTTAGT‑GTTACGGAAAGCGCGCAATAATACGGGTTTAATCTC‑AAAGGCGCAATACCCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTaa                                                                                                                        <  2:1065850/226‑1 (MQ=255)
                                                                                                          cACGGGATTCAGCCAGGAGGCCTCTTCAATCGGAAAGCCGAGGTCTGAAAGTTTTGGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGtt                                                                                                                          <  1:738267/237‑1 (MQ=255)
                                                                                                                 ttCAGCCAGGAGGCCTCTGAAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCAt                                                                                                                  <  1:401398/238‑1 (MQ=255)
                                                                                                                         ggaggCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACACCGTTAAGGGCCTAAAAATGac                                                                                                         >  1:215779/1‑238 (MQ=255)
                                                                                                                         ggaggCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGACGACGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGaa                                                                                                         >  1:47782/1‑239 (MQ=255)
                                                                                                                         ggaggCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTAATCTC‑AAAGGCGCTATCACCGCCCCCATGCCGAGGAACTGTTGACTATGCTTTTAAGGGAAAAAACACATTaaagggaaaaaaagaaa                                                                                                         >  2:340713/1‑224 (MQ=255)
                                                                                                                         ggaggCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCAAGAGCGCCATCTTT‑GCCGGGGATAAATGTTTGCGGCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCCCTATCACCGCCGCCATGCCGAGGAACTGTTGACTTGACTTTTAGCGGAAAACCCACGTTacaggacaaaaaagaaa                                                                                                         >  2:602337/1‑223 (MQ=255)
                                                                                                                          gaggCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGCTAAACCACGTTAAGAGCATaaaaacag                                                                                                          >  1:375662/1‑234 (MQ=255)
                                                                                                                             gCCTTTTAAATCTAAAAGCGGAGGTCCGAAAGTTTTTGCTGGAAGCGAGCGATGGAATTTTCCAGGGCGGCATCTTT‑GCGGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGc                                                                                                      <  2:173698/238‑1 (MQ=255)
                                                                                                                               cttttCAATCTGAAAGCCGAGGTCGGAAAGTTTTTGCGGGAAGCGAGCGATGGAATCTTCCAGAGGGGCATCTTG‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGt                                                                                                    <  1:555844/235‑1 (MQ=255)
                                                                                                                               ctctTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGGGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCCCGTTAAGGGCAAAAAAATGAAGGCGtt                                                                                                   >  2:244722/1‑239 (MQ=255)
                                                                                                                                     aaTCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGAtct                                                                                             <  1:973801/239‑1 (MQ=255)
                                                                                                                                      atttGAAAGGCGGGGTCTGAAAGTTTTGGGGGGAAGGGAGGGTGGGAATTTCCCAGGGCGGATTCTTG‑GGCGGGGATAAATGTTGGCTTCATGAAAACCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTCTCTC‑AAAGGCGCTATCCCCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGAtctc                                                                                            <  2:948592/236‑1 (MQ=255)
                                                                                                                                       tCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATCCGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTCGCGGTAAAACCACGTTAAGAGCAAAAAAAAGAAGGCGTTCGAttccc                                                                                           >  2:934686/1‑235 (MQ=255)
                                                                                                                                       tCTGAAAGCCGAGGTCTGAAAGTTTTTACTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTCTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTTTCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACt                                                                                                                                                          >  1:55289/1‑176 (MQ=255)
                                                                                                                                        tgaaaaGCCGAGTTTGGAAAGTTTTTGGGGGAAGCGAGCGATGGAATCTTCCAGAGGGGGATTTTT‑GGCGGGGAAAAATGTTTGCTTCATGAAAACACCTTTAGT‑CGTACGGAAAGCGCGAAATAATCCGGGTTTTATCTA‑AAAGGGGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCa                                                                                          <  2:654562/236‑1 (MQ=255)
                                                                                                                                        cTGAAAGCCGGGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCa                                                                                          <  1:934686/239‑1 (MQ=255)
                                                                                                                                           aaaGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCg                                                                                       >  1:194010/1‑239 (MQ=255)
                                                                                                                                                 ggggTTTGAATGTTTTTGGTGGAGGCGGGAGATGGAATTTTCCAGAGGGGCATCTTT‑GCCGGGGATAAATTTTTGCGTCATGAAAACCACTTGAGT‑CGTACGAAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCCCCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGc                                                                                 <  2:194010/237‑1 (MQ=255)
                                                                                                                                                              ttttGGTGGAGGCGGCGGATGTAACTTTCCAG‑GCGGGATTTTTGGCCGGAGTTAAATGTTT‑CGGTAAGTAAAACATCTTAGTCCGTACGGAAACGGCCAAATAATCCGGTTTTTAGCTA‑AAAGTCTAGATCACCGCCGCCATGCCGATGAACAGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGCATTTGATAAAGt                                                                     <  2:599106/238‑1 (MQ=255)
                                                                                                                                                               tttGCTGGAGGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGCATTTGATaaatg                                                                     >  1:421327/1‑235 (MQ=255)
                                                                                                                                                               tttGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATTTTTGCGGCATGAAAATCAGTTTAGT‑CGAACGCAAAGCGCGCAGTAATACGGGGTTTAACTC‑AAAGGACCTATCACCGCCGCCATGCCGATGGACTGTTTACTATGCTTTTAACGGACAAACCCCGTTAAGAACCTAAAAATAAAAGCGCTCCGTCTCCCCCGGATGAAATTTGATaaaaag                                                                    >  2:493765/1‑235 (MQ=255)
                                                                                                                                                               tttGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGG‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTCTCACCGCCGCCATGCCGATGAACTGGTGACTAGTCTTTTACCGGGAAAACCACGTTAAGGACCAAAAAATGAAGGCGTTCCATCTCCACCTCAGCGCATTTGATAAAgca                                                                    >  2:234469/1‑236 (MQ=255)
                                                                                                                                                                 tGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGAATTTAAAAAAggccct                                                                 >  2:560648/1‑234 (MQ=255)
                                                                                                                                                                                    atttttCCAGGGCGTCCTTTTT‑GCGGGGGATAAATGTTTGGTTCAATAAAACCCCTTTGGT‑CGTACGGAAACCGCCATATAATACGTGTTTTTTCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGCATTTGATAAAGTGCCTTTTGATTTCCTTGGCGAAg                                              <  2:641366/235‑1 (MQ=255)
                                                                                                                                                                                      attctccaggggggcagtttgaccGGGTATAAATGTTTGGCCAATGAAAACCCCTTTAGT‑CGTACGGAAAGCCCGAAATAATGCGGGTTTTATCTC‑AAAGGCCCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGCATTTGATAAAGTGCCTTTTGATTTCCTTGGCGAAg                                              <  1:592856/216‑1 (MQ=255)
                                                                                                                                                                                         tccggggCGTCATCTTT‑GCCGGGGAAAAATGTTGGCGTCATGAAAATCACTTTAGT‑CGTCCGGAAGGCGCGAAATAATACGGTTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGCATTTGATAAAGTGCCTTTTGATTTCCTTGGCGAAGTTGCa                                         <  1:473971/233‑1 (MQ=255)
                                                                                                                                                                                         tccgagggggCATCTTT‑GCCGGGGATAAATGTTTGCGTCAAGAAAATCATTTTAGC‑CGTACGGAAAGCCGGCAATAATAGGGGTTTTATCTC‑AAAGGCGTAATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGCATTTGATAAAGTGCCTTTTGATTTCCTTGGCGAAGTTGCa                                         <  1:88179/231‑1 (MQ=255)
                                                                                                                                                                                              agCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGCCTATGCTTTTAGCGGATAAACCACGTTAGGAGCATCAAAATAAAGGCGTTCGATCTCCACCGTATGGCATTTGGTCAAATGCCTTTTGTTTTCCTTGGCGAAGGTGccacacc                                    >  2:884047/1‑233 (MQ=255)
                                                                                                                                                                                                cGGCTTCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAACCCCTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTACCCC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGCATTTGATAAAGTGCCTTTTGATTTCCTTGGCGAAGTTGCACTACGt                                   <  1:340713/238‑1 (MQ=255)
                                                                                                                                                                                                cGGCATTTTT‑CCGGGGGAAAAATTTTTGGGTACGAAAAATCCCTTTAGT‑CGTACGGAAAGCGCGAAATAATTCGGGTTTTATCCA‑AAAGGCGTTACCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGCATTTGATAAAGTGCCTTTTGATTTCCTTGGCGAAGTTGCACTACGt                                   <  2:694918/238‑1 (MQ=255)
                                                                                                                                                                                                cGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGCATTTGATAAAGTGCCTTTTGATTTCCTTggggctgtctcttttac                                    >  1:734089/1‑222 (MQ=255)
                                                                                                                                                                                                 tgtttttttgtcgggggATAAATGTTGCGGTCATATAAATCCGTTTGGC‑TGTGAGGAAGGCGCGAGATAGTACGGTTTTTACCAC‑AAAGGTGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGGGCATAAAAATGAAGGCTTTCGATCGCCACCGTATGGCATTTGATAAAGTGCCTTTTGATTTCCTTGGCGAAGTTGCACTACGTa                                  <  2:114962/226‑1 (MQ=255)
                                                                                                                                                                                                 ggCATCTTT‑GCCGGGGATAAAGGTTTGCGTCATGAAAATCCTTTTAGC‑CGTACGGAAGGCGCGAAATAATCCGGGTTTTATCCC‑AAAGGCGCTATCCCCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGCATTTGATAAAGTGCCTTTTGATTTCCTTGGCGAAGTTGCACTACGTa                                  <  1:240396/238‑1 (MQ=255)
                                                                                                                                                                                                 gccATCTTG‑GCCGGGTAAAAATGTTTGCGTCATAAAAAACACTTTAGT‑CGTACGGAAAGCGCGAAATAATACGGGTTTTATCTC‑AAAGGCGCTACCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGCATTTGATAAAGTGCCTTTTGATTTCCTTGGCGAAGTTGCACTACGTa                                  <  1:430502/236‑1 (MQ=255)
                                                                                                                                                                                                  gCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCCCCGTATGGCATTTGATAAAGGGCCTTTTGATTTCCTTGGCGAAGTTGAACTACGGAGt                                >  1:396051/1‑239 (MQ=255)
                                                                                                                                                                                                  gCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCACCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGCATTTGTTAAAATACCTTTTGATTTCCTTTGCGAATTTGCACTCCGTAGt                                >  1:696014/1‑239 (MQ=255)
                                                                                                                                                                                                   ctttttt‑GCCTGGGATAAATTTTTGGCGCATGAAAATCTTTTGATG‑TGGACGAAAAGCGCGGAATATTACGGGTTTTATCTA‑AAAGGCGCTATACCCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGCATTTGATAAAGTGCCTTTTGATTTCCTTGGCGAAGTTGCACTACGTAGt                                <  2:47782/234‑1 (MQ=255)
                                                                                                                                                                                                   cATCTTG‑TCCGGGGATAAATGTTTGCGTCATGAAAATCCCTTTAGT‑CATACGGAAAGCGCGCATTAATGCGTGTTTTATCCC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGCATTTGATAAAGTGCCTTTTGATTTCCTTGGCGAAGTTGCACTACGTAGt                                <  1:617643/238‑1 (MQ=255)
                                                                                                                                                                                                       ttt‑tCCGGGAATAAATGTTTGCGCCATGAAAATCCCTTTAGT‑CGTACGGAAAGCGGGAAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGCATTTGATAAAGTGCCTTTTGATTTCCTTGGCGAAGTTGCACTACGTAGTCTTta                           <  1:576260/239‑1 (MQ=255)
                                                                                                                                                                                                       ttt‑GCCGGGGAGAAATGTTTGCGTAATGAAAACCACTTTAGT‑CGGACGGAAAGCGCGAAATAATACGGTTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGCATTTGATAAAGTGCCTTTTGATTTCCTTGGCGAAGTTGCACTACGTAGTCTTta                           <  1:687055/239‑1 (MQ=255)
                                                                                                                                                                                                        ttttctgggatgaaaTGTTGCCGTTTTGAAAATCTTTTTAGG‑TGTACGGAAGGCTCGAACTAAGA‑TGGTTTTAACTCAAAAGGTGCTTCCCCCTCCGCCATGCCGATGAACTGTTGTCTAGGCTTTTAGCGGATAAGCCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGCATTTGATAAAGTGCCTTTTGATTTCCTTGGCGAAGTTGTACTACGTAGTCTTta                           <  2:225900/227‑1 (MQ=255)
                                                                                                                                                                                                           gCCGGGGATAAATGTTTGCGTCATGAAAATCCCTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCCCCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGCATTTGATAAAGTGCCTTTTGATTTCCTTGGCGAAGTTGCACTACGTAGTCTTTATAc                        <  1:244722/239‑1 (MQ=255)
                                                                                                                                                                                                                 gaaaaaTTTTTGGGTCATGAAAATCCCTTTAGG‑CGTACGGAAAGCGCGAAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGCATTTGATAAAGTGCCTTTTGATTTCCTTGGCGAAGTTGCACTACGt                                   <  1:36170/219‑1 (MQ=255)
                                                                                                                                                                                                                           tGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAACCCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCACCCGTATGGCATTTGATAAAGTGCCTTTTGATTTCCTTGGCGAAATTGCACACCGTAGGCTTATAACCTTTGTACTGGTCttt        >  2:400119/1‑239 (MQ=255)
                                                                                                                                                                                                                           tGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCCCGTTACGAGCATAAAAATGAAGGCGTTCGATCTCCCCCGCACGGCATTTGCTAAATGGCCTTTTGATTTCCTTGGCGACGTTGACCTACGTCTCCTTTTAACCtttccttttcaacc         >  2:36170/1‑227 (MQ=255)
                                                                                                                                                                                                                           tGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGCATTTGATAAAGTGCCTTTTGATTTCCTTGGCGAAGTTGCACTACGTAGTCTTTATACCTTTGTACTGGTCttt        >  1:561742/1‑239 (MQ=255)
                                                                                                                                                                                                                           tGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGCATTTGATAAAGTGCCTTTTGATTTCCTTGGCGAAGTTGCACTACGTAGTCTTTATACCTTTGTACTGGTCttt        >  1:925494/1‑239 (MQ=255)
                                                                                                                                                                                                                                 aTGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGCATTTGATAAAGGGCCTTTTGATTTCCTTGGCGAAGTTGCACAACGTAGTCTTTATACCTTTTTACTGGTCttttttgt   >  2:136723/1‑235 (MQ=255)
                                                                                                                                                                                                                                  tGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGCATTTGATAAAGTGCCTTTTGATTTCCTTGGCGAAGTTGCACTACGTAGCCTTTATACCTTTTTACTGGTCTTTTTGTTc  >  1:309867/1‑238 (MQ=255)
                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                       
ATTCACCGAGTGCAGAAGCCAGCGCCGCTTTCTTGGTTGCGCCTTTACCGTTGGTAAAACACAGTGCGCACTCTTTGTCGCGAATATGTACAGACCAGACGTTAGGCACGGGATTCAGCCAGGAGGCCTCTTCAATCTGAAAGCCGAGGTCTGAAAGTTTTTGCTGGAAGCGAGCGATGGAATCTTCCAGAGCGGCATCTTT‑GCCGGGGATAAATGTTTGCGTCATGAAAATCACTTTAGT‑CGTACGGAAAGCGCGCAATAATACGGGTTTTATCTC‑AAAGGCGCTATCACCGCCGCCATGCCGATGAACTGTTGACTATGCTTTTAGCGGATAAACCACGTTAAGAGCATAAAAATGAAGGCGTTCGATCTCCACCGTATGGCATTTGATAAAGTGCCTTTTGATTTCCTTGGCGAAGTTGCACTACGTAGTCTTTATACCTTTGTACTGGTCTTTTTGTTC  >  NC_000913/956407‑956869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A