Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F17 I0 R1 160 98.0 2214160 89.0% 1970602 222.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,510,049 A→C 11.5% V309G (GTG→GGG)  yhfX ← putative pyridoxal 5'‑phosphate binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,510,0490AC11.5% 270.2 / 2.6 103V309G (GTG→GGG) yhfXputative pyridoxal 5'‑phosphate binding protein
Reads supporting (aligned to +/- strand):  ref base A (65/21);  new base C (2/15);  total (67/36)
Fisher's exact test for biased strand distribution p-value = 1.11e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 103 total aligned reads displayed.

ACGCCCCCAGAGAGTTTCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGGC  >  NC_000913/3509813‑3510276
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                     
aCGCCCCAAGAGAGTTTCCAAGACTTGCATAACGGCCGACGATTTCCGGTTCGCCACGAGTAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACAcc                                                                                                                                                                                                                                     <  1:1031867/239‑1 (MQ=255)
        agagagTTTCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑g                                                                                                                                                                                                                            >  1:268215/1‑239 (MQ=255)
        agagagTTTCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGGGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCagg                                                                                                                                                                                                                             >  1:688377/1‑237 (MQ=255)
        aaagagTTTCCAAGACTTGCAGAACCACCGAGAATTTCCGGTTCCCCACCATGAATACCGGACACCATCCACACATCGCTACGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑g                                                                                                                                                                                                                            <  1:943537/237‑1 (MQ=255)
                tCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCAt                                                                                                                                                                                                                    >  1:730384/1‑239 (MQ=255)
                tCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGGGTAGTC‑GCTACTGCCGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGAAAACACCAACgacttttcggcat                                                                                                                                                                                                                     >  2:857051/1‑227 (MQ=255)
                        tGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAG‑TTTGCGCATGACAacga                                                                                                                                                                                                            >  1:379968/1‑239 (MQ=255)
                        tGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTAACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GTTACTGCTGTCATCCACCGTTTTGAGATTGGGTTCAGTAATCTTTTTATTTTCTGGCGTAAACACCAACGCAT‑GTTTGGAATGACCacga                                                                                                                                                                                                            >  2:424881/1‑239 (MQ=255)
                        tGTCAAAACCCCCGCCTATTTCCCGTTCGCCACGAATAATTCCGGACCCCAGCACCCAATCCCTACGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCacga                                                                                                                                                                                                            <  2:92433/239‑1 (MQ=255)
                          tCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGGTTCAGTAATCTTTTGATTTTCTGGCGTAAACACAAACGCAT‑GTTGCGCTTGACCacgacg                                                                                                                                                                                                          >  1:436452/1‑239 (MQ=255)
                          tCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACACCTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGCAGTC‑GATACTGCTGTCATCCACCGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACCCCAACCCAT‑GTTGCGCATGACCacgacg                                                                                                                                                                                                          >  1:497793/1‑239 (MQ=255)
                                cgaccgacGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGAAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAAAGCAT‑GTTGACCATGACCacgagcgaaaaa                                                                                                                                                                                                    >  2:467965/1‑231 (MQ=255)
                                  accgacGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTaa                                                                                                                                                                                                   >  1:671637/1‑238 (MQ=255)
                                    cgacgaTTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAAcc                                                                                                                                                                                                 >  1:777105/1‑238 (MQ=255)
                                    caacgaTTTCCGGTTCGCCAAGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATC‑TGCGGGCGAAAAAAGAGCACCACTG‑AACTGCTTACCGGAAACTCGCCTGACAACGGCAGGGTGGAGTC‑GATACTCCGGTCATCCACAGCTTTTCGACTGGGTTCAGTAATCTTTTGAATTTCTGCGGTCAACACCCACGCAT‑GTTCCGCacatacaccgcgccagaaaccc                                                                                                                                                                                                >  2:676522/3‑218 (MQ=255)
                                     gcctaTTTCCGGTTCCCCGAGATGATTCCCGGACCCCAGCACCAAATCGCTGGGGGTGAAAAAAATC‑GGGGTGCGAAAACAGGGAACCACTG‑CGCTGCTTCCCGGAAACTCGCCTGCGAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAACCACCAACGCAT‑GTTGCGCATGACCACGACGATAGTACccgc                                                                                                                                                                                               <  2:477934/235‑1 (MQ=255)
                                                    gCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACCCCAACGCAT‑GTTGCGCCTGAACACGACAGTAGTAACCGCCGCCCCAGCacaaac                                                                                                                                                                                >  2:946297/1‑234 (MQ=255)
                                                              atcccGGACCCCAGCACCACATCGCTACGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCa                                                                                                                                                                       <  1:857051/234‑1 (MQ=255)
                                                                 gcccacccccaccccccctCGCTACGGGGTAAAAAAATCGTGGGGGC‑AAAAAGGAGCCCCACGG‑CCCTGTTACCCGGAAACTCGCCTGCCAGCGGCGGGGTGTATTC‑TATCCTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACCCCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGa                                                                                                                                                                   <  2:907196/220‑1 (MQ=255)
                                                                   ggACACCAGCACCACATCGCTACGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGaaaa                                                                                                                                                                >  1:860697/1‑238 (MQ=255)
                                                                       acCAGCACCACATCGCTACGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGCTTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAAAGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCCCCGTAGCAACAGTCGTG‑GCCCCGGAAatgatg                                                                                                                                                            >  2:682243/1‑239 (MQ=255)
                                                                       acCAGCACCACATCGCTACGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGAAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGCCCCCGACGATAGTAAACGCCGCCGAAACAGGAGCTGGC‑CCCCCGGAAaagagg                                                                                                                                                            >  2:400579/1‑237 (MQ=255)
                                                                            caccacATCGCTACGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAACCACCAATGCAT‑GTTGCGCATGACCACGACGATa                                                                                                                                                                                                       >  1:1070342/1‑192 (MQ=255)
                                                                             ccccctctgcgtcGGGTGACAAAAATC‑TGGGTGCAAAAACAGAGCACCCCGC‑TCCTGTTTACCGAAAACCCGCCTGCCAGCGGCAGGGTGTAGGC‑TATACTGCTGTCACCCCCAGTTTTGAGATTGGTTGCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATGGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGAt                                                                                                                                                      <  2:809490/227‑1 (MQ=255)
                                                                             cccccctcgttccGGGGGACAAACAGC‑TGCGTG‑GAAAACAACGCCCCCCCGTCCTTGCTGCCCGGAAACCCCCTCGCCAGCGGAGGGGTGTAGTC‑GATCCTACTTTCACCCCCATTTTTGAGATTGGTTTCAGTAATTTTTTAATTTTCGGGCGTAAACACCAACGAAT‑GTTGCTCATGACCACGACGATAGTCCCCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGAt                                                                                                                                                      <  2:229317/227‑1 (MQ=255)
                                                                             cccacATCGCTACGGGTTAAAAAAATC‑TGCGTGGGAAAACAGAGCCCCCCGG‑CCCTGCTTACCGGAAACGCGACTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGAt                                                                                                                                                      <  1:522617/238‑1 (MQ=255)
                                                                             cccacATCGCTACGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCCCCACTG‑CACTGCTTACCGAAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACGGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGAt                                                                                                                                                      <  1:535552/238‑1 (MQ=255)
                                                                             accacACCGCTACGGGTGAAAAAAATC‑TGCGTGCGAAAACAGAGCACCCCTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGAt                                                                                                                                                      <  1:375866/239‑1 (MQ=255)
                                                                                 caTCGCTACGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGgagctgtct                                                                                                                                                  >  1:907196/1‑233 (MQ=255)
                                                                                 caTCGCTACGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTc                                                                                                                                                   >  1:364508/1‑238 (MQ=255)
                                                                                       tACGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACCGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACAACGCCGATAGTAACCGCCGCGCTAGCGATAGC‑GTCGGCCCCGGAAATGAGGGGGAGTTTCATTTAAc                                                                                                                                            >  2:770128/1‑239 (MQ=255)
                                                                                         cGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCAt                                                                                                                                                                                                                    <  2:745427/166‑1 (MQ=255)
                                                                                         cGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCAt                                                                                                                                                                                                                    >  1:745427/1‑166 (MQ=255)
                                                                                                cAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCCCGGAAATGTTGGGCGATTTCACTTAACCAGAGCAt                                                                                                                                    >  1:665768/1‑238 (MQ=255)
                                                                                                   aaaTC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGGAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCCCCGTAACAATAGCTGTC‑GCCACGGAAATGATGGGAGATTTACCTTAACCAAAGAATcgcg                                                                                                                                >  2:648724/1‑239 (MQ=255)
                                                                                                         tgcgtgcgAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGCGTAGTC‑GATACTGCTGTCCTCCACAGTTTTGAGATTGGTTTCAGTAAGCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCAGGACCACGACGTTAGTAACCACCCCCCTAACAGAAGCTGTC‑GCCACGGAAATGATGGGAGATTTAACTAAAcaaagcaaacccgatacg                                                                                                                           >  2:1019341/1‑222 (MQ=255)
                                                                                                          gcgtgcgAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGATTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTACCTGTG‑GCCACGGAAATGATGGGAGAttt                                                                                                                                                    >  1:902160/1‑213 (MQ=255)
                                                                                                           cgtgcgAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGCTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑TTTGCGCATCACCACGACGATAGTAACCGCCGCCGTAGCAGTACCGGTC‑CCCCAGGCAATGCTGGGGGATTTCCCTTAAACAGAGCACcgccgaacgt                                                                                                                          >  2:832296/1‑231 (MQ=255)
                                                                                                               cgAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGAAGCAGTAGCTGTC‑GCCACGGAACTGATGGGAGATTTAACTTAACCAGAGACACCCGAAACGTTCAgg                                                                                                                     >  2:492912/1‑239 (MQ=255)
                                                                                                                    aCAGAGCCCCACGG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGTTGTAGTC‑GATCCTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACCCCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGAt                                                                                                                <  1:23614/239‑1 (MQ=255)
                                                                                                                       gagCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCg                                                                                                              >  1:20857/1‑238 (MQ=255)
                                                                                                                                tg‑cactgcTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGCTGGGGGATTTCACTTAACCAGAGAATCGGCATACGTTCAGGCTGACGGCCCTGCTGGt                                                                                                    >  2:604148/1‑239 (MQ=255)
                                                                                                                                  cctctgcTTACCGGAAACTCCCCTGCCGGGGGCGGGGTGT‑GTCTCATTCGTCTTCCATCCACAGTTTTGAGATTGGTTTCATTAATCTTTTGATTGTCTGGCGTAACCACCAAGCCCT‑TTTGCGCATAACCACGACGATAGGAGCCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGtt                                                                                                   <  2:193557/236‑1 (MQ=255)
                                                                                                                                      tgcTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCCGTAGCTGTC‑GCCACGGAACTGATGGGAGATTTCACTTACCCAGGTCATCGCGATACGTTCAGGCTGATCGCCCTCCTGGTTTGcc                                                                                               >  1:579132/1‑239 (MQ=255)
                                                                                                                                        cTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAAccgccgcc                                                                                                                                                                                           <  1:93084/146‑1 (MQ=255)
                                                                                                                                        cTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAAccgccgcc                                                                                                                                                                                           >  2:93084/1‑146 (MQ=255)
                                                                                                                                        cTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGAt                                                                                                                                                      >  2:92651/1‑182 (MQ=255)
                                                                                                                                        cTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGAt                                                                                                                                                      <  1:92651/182‑1 (MQ=255)
                                                                                                                                        cTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCgg                                                                                             >  1:193557/1‑239 (MQ=255)
                                                                                                                                        cTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCgg                                                                                             >  1:552834/1‑239 (MQ=255)
                                                                                                                                        cTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCCCCGTAGCAGTAGCTGTC‑GCCACAGAAATGATGGGAGATTTCCCTTAACCAGGCCATCCCGATACGTTCAGGCTTATCGCCCCGCTGGTTTCCCga                                                                                             >  2:334460/1‑238 (MQ=255)
                                                                                                                                        cTTACCGGAAACTCGCCGACCAGCGGCAGGGTTTAGTC‑GATTCTGCTGTCTTCCAAAGTTTTGAGATTGGTTTCAGTAATTTTTTGATTTTCGGGCGTAAACCCCAGCGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCg                                                                                              <  1:430003/238‑1 (MQ=255)
                                                                                                                                          tACCGGAAACCCGCCTGCCAGCGGGAGGGTGTAGTC‑GATACTGCGGTCATCCACAGTTTTGAGATGGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGaa                                                                                           <  1:925419/239‑1 (MQ=255)
                                                                                                                                           aCCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAAt                                                                                          >  1:890258/1‑239 (MQ=255)
                                                                                                                                             cGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGAt                                                                                                                                                      <  1:949321/177‑1 (MQ=255)
                                                                                                                                             cGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGACTAg                                                                                        >  1:215070/1‑239 (MQ=255)
                                                                                                                                                  aCTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGGAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGAATCCCGATCCGTTCAGGCGGAACGCCCCGCTGGCTACCCGGAAAAGGGcc                                                                                    >  2:430003/1‑238 (MQ=255)
                                                                                                                                                  aCTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGT‑AACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGTGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCg                                                                                  >  1:488844/1‑239 (MQ=255)
                                                                                                                                                    cgcccggcaggCGGCAGGGTGTAGTC‑GATTCTGCTGTCAACCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGt                                                                                 <  1:424881/229‑1 (MQ=255)
                                                                                                                                                       ccTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATAGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCa                                                                               >  1:780453/1‑238 (MQ=255)
                                                                                                                                                           ccAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGTGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACCGAACTGATGGGAGATTTCACTTAACCAGAGCATCGCGATAAGTTCAGGCTGATCGCCCTGCTGGTTTCCCGGAATCATGCCCGTACGCGCa                                                                          >  1:150460/1‑239 (MQ=255)
                                                                                                                                                           ccAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGGAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTAACTTAACCAGAGCATCCCGATCCGTTCAGGCTGATCACCCTGCTGGTTTGCCGGATAAGGCCCCGTCAGCGCa                                                                          >  2:801320/1‑239 (MQ=255)
                                                                                                                                                                      gtttttctttttctgcttttCACCCACATTTTTGGGTTTTGTTTAAGTAATTTTTTGATTTTCGGGGGTAAACCCCAACCCAT‑GTTCGCCATGACCACGACGATAGTACCCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGtt                                                                <  2:688377/220‑1 (MQ=255)
                                                                                                                                                                         tAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGCTACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCATCGCATGACCGGGTTCGGc                                                            >  1:5593/1‑239 (MQ=255)
                                                                                                                                                                         tAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGc                                                            <  1:134572/239‑1 (MQ=255)
                                                                                                                                                                          tttgggtatctgttgTCACTCACTGTTTTGAGATTGTTTACATGAATTTTTTTATTGTCGGGGGTAAACCCCAAGGTATGGTTGC‑AAGGACCACGACGGTAGTCACCGCCGCCGTAGCAGTAGCTGGC‑GCCACGGAAATGATGGGAGATGTCACTTAACCAGAGCAGCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGc                                                            <  2:517239/230‑1 (MQ=255)
                                                                                                                                                                           gTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTAGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTCCgg                                                             >  1:669325/1‑236 (MQ=255)
                                                                                                                                                                               gATACTGCTTTCATCCAAAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACCCCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAg                                                       <  1:400579/239‑1 (MQ=255)
                                                                                                                                                                                aTACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGCAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAACGCATGCCCGGGTTCGGcttagg                                                       >  1:517239/1‑233 (MQ=255)
                                                                                                                                                                                 tACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGGGt                                                      >  1:929607/1‑238 (MQ=255)
                                                                                                                                                                                  aCTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTc                                                     >  1:801346/1‑238 (MQ=255)
                                                                                                                                                                                  aCTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTc                                                     >  1:492807/1‑238 (MQ=255)
                                                                                                                                                                                    tgtgttcctccccttttttGAGTTTGGTTTCGATAATTTTTTGTTTTTGCGGCTGAAACCCCAACGGTG‑TTTGCGCAGGACGAGGACGTTAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTcaca                                                  <  2:20857/224‑1 (MQ=255)
                                                                                                                                                                                    gggtgTCATCCACAGTTTGGAAATTGGTTTCAGTAATCTTTTGATTTCCTGGGGTAAACCCCAACGCAT‑TTTGCGCATGACCCCGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTcaca                                                  <  1:492912/236‑1 (MQ=255)
                                                                                                                                                                                     gtttccccccACATTTTTGGATTTGTTTTAAGTAATCTTTTGATTTTCGGGCGAAACCCCCAACGCAT‑GTTGCGCATGACCAGGGCGATAGTAACCGCCGCCGTAGCAGGAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCacac                                                 <  2:777105/231‑1 (MQ=255)
                                                                                                                                                                                     gctgTCATCCACATTTTGGAAATTGGTTTCAGTAATCGTTTAATTTTCTGGCGTAACCCCCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCacac                                                 <  1:475049/239‑1 (MQ=255)
                                                                                                                                                                                     cctgTCATCACCATTTTTGGGATTGGTTTCGTTAATCTTTTGATTTTCTGGCTTAAACCCCAACGCTT‑GTTGCGCATGACCCGGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCacac                                                 <  1:648724/238‑1 (MQ=255)
                                                                                                                                                                                      ctgTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCCCTTAACCAGAGCATCGCGAGACGTTCAGGCTGATCGCACTGCTGGTTTGCCGGCATAGTGCCCCGAAGCGCATGACCGGGTTGGGCATGAGGCGCAcc                                                >  2:931025/1‑239 (MQ=255)
                                                                                                                                                                                      ctgTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGACAGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCCGCCCAGGACCCGGTCCGGCAtcggccacaac                                                >  2:747992/1‑229 (MQ=255)
                                                                                                                                                                                         aagagaatgtttttGAAATTGGTTTACTTATTCTTTTGATTTTCTGGCTAAAACCCCAACGCAT‑TTTCGGCATGCCCAAGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTa                                             <  2:655510/229‑1 (MQ=255)
                                                                                                                                                                                           aTCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGCTACGTTCAGGCTGATCACCCTGCTGGATTGCCGGACAAGTGCCCGGCAGAGCCTGACCGGGGTCGGCATGAATTCCACCgaagg                                           >  2:511281/1‑235 (MQ=255)
                                                                                                                                                                                           aTCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCCAACCGAAtt                                           >  1:246870/1‑239 (MQ=255)
                                                                                                                                                                                              cacaGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCCCTTAACCAGAGCATCGCGATACGTTCAAGCTAATCGACCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATCACCGGGTTCGGCAAGAGTcacaaccaatggcg                                        >  2:335472/1‑229 (MQ=255)
                                                                                                                                                                                              cacaGTTTTGAAATTGGTTTAAGTAATCTTTTGATTTTCTGGCGTAAACCCCAACGCAT‑GTTGCGCATGCCCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTgcg                                        <  1:64802/239‑1 (MQ=255)
                                                                                                                                                                                              cacaGTTTGGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTgcg                                        <  1:179922/239‑1 (MQ=255)
                                                                                                                                                                                                   ttttGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTCCGCCAgc                                   >  1:145993/1‑238 (MQ=255)
                                                                                                                                                                                                     ttGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGAt                                                                                                                                                      >  2:1028845/1‑122 (MQ=255)
                                                                                                                                                                                                     ttGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGAAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGAt                                                                                                                                                      <  1:1028845/122‑1 (MQ=255)
                                                                                                                                                                                                        agaTTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCACAAATg                               >  1:307144/1‑238 (MQ=255)
                                                                                                                                                                                                           ttGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGAAATGGCAg                           >  1:682174/1‑239 (MQ=255)
                                                                                                                                                                                                             ggTTTCATAAACTTTTTGATTTTTTGGCTTAAACCCCAACGCAT‑TTTCCGCATGACCCCGAAGATGGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCg                         <  1:770128/239‑1 (MQ=255)
                                                                                                                                                                                                             ggTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCCGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCCGTAATTGCactg                         >  1:40264/1‑236 (MQ=255)
                                                                                                                                                                                                             ggTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTg                                                                                      >  2:617790/1‑178 (MQ=255)
                                                                                                                                                                                                             ggTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAga                                   >  1:655510/1‑228 (MQ=255)
                                                                                                                                                                                                             ggTTTAAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTg                                                                                      <  1:617790/178‑1 (MQ=255)
                                                                                                                                                                                                                        tCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGTCACGGAAGGGCACCTg              >  1:485037/1‑239 (MQ=255)
                                                                                                                                                                                                                             tGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGa                                                        >  1:402427/1‑192 (MQ=255)
                                                                                                                                                                                                                                   tCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCGGCGCATGACCGGGTTCGGCATGAGTCACCCCGAATTCCCCCAGTAATGGCAGCGAAGGGCAGCggggcccagaggg   >  2:1012333/1‑229 (MQ=255)
                                                                                                                                                                                                                                   tCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGAGGGTCCCTGAAg    >  1:213830/1‑238 (MQ=255)
                                                                                                                                                                                                                                    cTGGCTTAACCCCCAACCCAT‑TTTGGCAAGGCCCAGCACGATAGGAACCCCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGgc  <  1:1019341/239‑1 (MQ=255)
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                     
ACGCCCCCAGAGAGTTTCCAAGACTGTCATAACGACCGACGATTTCCGGTTCGCCACGATGAATACCGGACACCAGCACCACATCGCTACGGGTGACAAAAATC‑TGCGTGCGAAAACAGAGCACCACTG‑CACTGCTTACCGGAAACTCGCCTGCCAGCGGCAGGGTGTAGTC‑GATACTGCTGTCATCCACAGTTTTGAGATTGGTTTCAGTAATCTTTTGATTTTCTGGCGTAAACACCAACGCAT‑GTTGCGCATGACCACGACGATAGTAACCGCCGCCGTAGCAGTAGCTGTC‑GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGGC  >  NC_000913/3509813‑3510276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A