Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F1 I0 R1
|
73 |
134.7 |
2417326 |
96.9% |
2342388 |
265.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,708,805 |
T→C |
21.4% |
R629R (CGT→CGC) |
rsxC → |
SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,708,805 | 0 | T | C | 21.4%
| 87.5
/ 3.8
| 48 | R629R (CGT→CGC) | rsxC | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base T (15/20); new base C (7/2); total (26/22) |
| Fisher's exact test for biased strand distribution p-value = 1.32e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGC > NC_000913/1708517‑1709093
|
gcAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCCAATGCGGAACCAGAAGAACAGGTCGCTCCGGGCACAGCCTCCGCAGAAGCCGCGAACGCCCGt > 1:924149/1‑289 (MQ=21)
cAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGAAGCAGCAACCTTTGATGATCCACGGAAAACTGCCGTTGAAGCAGCTATCGCCAGCGCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCAGAACCAGAACAACAGGACGATCCGCGCAAAGCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCaaa < 1:250314/289‑1 (MQ=255)
agCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCCAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTTGATCCGAGCAAAGCCGCCGTCGCCGCAGCTATTGCCGGTGCCAACGc > 1:491850/1‑288 (MQ=255)
tcgtataagagacagcgCAGCAACCGTTGCTGATCCACGTAAAACTGCCCTTGAAGCAGCTATCGCCCGCGCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGACAAAGCACGCAAGCTGGAACAGCaa < 1:1140385/274‑1 (MQ=255)
cagcaAACTAACGAGGCAGCAAACGTTGCTGTTCCACGAAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCaa < 1:669938/288‑1 (MQ=255)
cagcaAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGACGAAGCCGCCAGTGCCCGTGCCAAACCGCGCAAAGCGGAGCGGCCACCGGCTAATGCCGAACAAGAAGAACAGGTCGATACGCGGAAAGCCGCCGTCACAGGCGCCAGTGCCCGGGCAAAAGCCCGGAACCTGGGAGaacaac > 2:1139511/1‑289 (MQ=17)
aagacgCGGAAACCGTTGCTGTAACAGGGAAAATGGCAGTTCAGGCAGCTCT‑GGCCGAGCCAGAAGGGTCCAAGCTGGAAAAGCAACAGGCTAATGCCGAACCAGAACAACAGGTTGATCCGCGCAAAGTCTCCGTCTAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGc < 2:1193469/287‑1 (MQ=14)
acaACCGATGCTGATGCACGAAAAAATGCCGTGGAAGCAGCTATCGCCCGCGCCA‑AAACGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTGGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATCGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAg < 1:1018202/288‑1 (MQ=255)
tGCTGATCCACGTAAAAGTGCGTGTGAAGCAGCCATCACCCGCGCCA‑AAGCGCGCAAGCTGGAACAGTAACAGGCTAAAGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑aaca < 1:124299/285‑1 (MQ=255)
aTCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCACGCAACCCGGAACAGCAACAGGCTATTGCGGCGCCCGAAGAACTGGTCGATCCGCGCAAAGCCGACGTCGAAGACGCTATTGCCAGAGCCAAAGCACGCAAGCGGGAACAGCAAACGGCTAATGCGGACGACG‑AACAACAggcaca > 2:999329/1‑285 (MQ=14)
cGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCCCCAAAGCACGCAAGCTGGAACCGCAACAGGCTAATGCCGAGACAC‑AAAAACAGGTCGAAcccg > 1:633106/1‑287 (MQ=255)
cgcCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCCGCGCCAAAGCACGCAAACTGGCACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGAACCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCg > 1:186831/1‑288 (MQ=255)
cgcCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACCGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGGTCGATCTCCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGAGCCACAGCACGCAACCGGGCACAGCAACAGGCTAATGCCGAGCAAG‑AAGAACAGGTCGATACGCGCAAAGCAGCCATCCACGCCGCTATTGACCGa > 2:372815/1‑289 (MQ=11)
cgcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCCAGCAAGCTGGAACAGCAACAGGCTAACGCCGAGCCAG‑AACCACAGGTCGATCAGCGCAAAGCCGCCGGTGAAGCCGCTATTGCCCGAGCCCAAgccc > 1:872288/1‑287 (MQ=14)
cgcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCACCCAAACCGCAACAGCAACCGGCTACTGCAGACCCAGAAAAAACAGG‑CGGTGCGCGCAACGCCGCAGTAGAAGCCgacgtacacccagcccaccgc > 2:814162/1‑268 (MQ=11)
gCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCAGTGGCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGCGCCAA‑CACAACAGGGCGCACGCCGCAAAGCAGCAGCCAAAACCGCGATTGCTCGTGCCAAAgaacacaa > 1:89472/1‑281 (MQ=14)
cAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCCCGCAAGCTGGAACAGACACAGGCTAATGCCGAGCCAG‑AAGAACAGGTCAATCCTCGCAAAGCCGCCGTCAAAGCTGCGATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGc > 1:189502/1‑289 (MQ=17)
aCAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCCATTGCCCGTGCCAAAGCACGCAAGCCGGAACAGCAACAGGCTAATGCCGAGCCCG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGAGCCACAGCGCGCAAACGCGACCAGCa > 1:747102/1‑288 (MQ=255)
aTGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCGGCTATTCCCCGCGCCAAAGCCCGCAAACTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCCGTCCGCGCAACGCCCCCGTCGCCCCCGCCATTGCCCCGCCCCAGGCCCGAAAACCGGACCAGCCACAGGCttc > 2:1087855/1‑287 (MQ=14)
aaCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCCGCGCCAAAGCGCGCAAGCCGGAACAGCAACAGGCTACTGCGGAACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCCGTCGCAGCCGCTATTGCCCGCGCCCAAGCACGCTACACAAAACCGCAACTGGCTACGGCCCACCCAG‑CATAAAAGGTGGATACGCCCAAAGCAGCCGTAGAAGACGCTCATGCCCGAGACCCAGCACACAAGCACGGACAGCAACCGGCGAAAGCAGa > 2:319265/1‑289 (MQ=9)
aaCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTCGATCCTCGCAAAGCCGCCGTCGAAGCCGCAATTGCCCGTCCCAAAGCACCCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCCATCCCAGCAAACCCGCCGTCCACACCGCTCTCACTCGACCCAAAGCGCGCAAACGGGCCCAGCAACCgtacactaccga > 2:503360/1‑278 (MQ=17)
aCCAGAACACCGGGTCGACCCGCGCAAAGCCGCCGTCGAAGCCGCCAGGGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGa < 1:58293/288‑1 (MQ=255)
acaacaGGTCGATCCGCGCAAAGCCGCCTTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCag < 1:503360/287‑1 (MQ=255)
aaaaGGTCGATCCGGGCAAAGCCGCCGTCGAATCTGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTGGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACGGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaaga < 1:254408/286‑1 (MQ=255)
caGGTCGTTCCGCGAAAAGCCGCCGTCGAAGCCGCTATTGCCCGCCCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCTGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAAc < 1:1139511/289‑1 (MQ=255)
ttgctgctCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCGGCCGTCGAAGCCGCTATTGCCCGCGCGAAAGCCCGCAAGCTGGGACAGCAAAAGGCTAAGGCGGAACAAG‑AAGAACACTTGGATCCTCGCAAAGCAGCCGTTGACGCTGCCAATGCCCGAGCCCAAGCCAGGCAACGCGAACATCCACCGGCTaaaaacacgccagaaaaaca > 2:225690/8‑271 (MQ=14)
ggTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AAGAACAGGTCGATCCGCCCAAAGCCGCCGTTGACGCGGCCCTTGCCCGCACCCAAGCCCGAAAGAGCGCACAGCACCAGGCTGAAGCGGCGGCacaagcagca > 2:1183067/1‑284 (MQ=14)
cgcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCACCTGCCAAAGCACCCCAACTGGCACAGCAACCGGCCAATGCCGAGCCAG‑AATCACCGGTCGATCCGCGCAAACCCGCCGTCGAAGCCGATATTGACACTGCCACAGCTCGCCCACGGAAACCACAACCGGCCACTCACGAGCCAGACACACAGGtctatctga > 2:236433/1‑281 (MQ=14)
gTCGAAGCCGCGATTGCGCGGGCCAAAGCGCGCAAGATGAGAAAGCAACAGGCTAATGCGGAGCAAGAAGAACAGGACGATCGGCGCAAAGACGCCGGCGAAGCCGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCg < 1:688100/289‑1 (MQ=17)
cgcgATTGCCCGGGCGAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAg < 1:642308/287‑1 (MQ=255)
cGCCATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACAAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGc < 1:236433/288‑1 (MQ=255)
caagaccGAGCCACAGCACTCAAGCTGAAAGAGCAACAGACTCATCAGGAACCAGGAAAACAGGCAGGTCCCCGAAAAGCGGCCGACGAAGCAGCTATTGCCCGCGACAAAGCACGCAATCTGGAACAGCAACAGCCTAATGCCGAGCCAG‑AACAACAGGTCGAGCCGCGCAAAGCCGCCGTCGAAGCCGCTATGGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTa < 2:1111943/284‑1 (MQ=255)
cccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGCACAG‑‑CGAGCCCCGCACAGCCGCCCCCGACGGACCCATTTCACGAGCCACAGCGCGCAAACTTGAGAAGCAACCGGCCAATTTCGGGCCAG‑AACAAAAGGGGGACACTCGCAAACACACCACCCAACCCGCCATTGCGCGCCCCACAGGCCCCAAACGGGTACGGGAACCGGTCAAAACACGCACAGAAAAACAAGTTTATCCCCGGAAAGCTGCCATCAAAgacactcagagat > 2:760725/1‑277 (MQ=255)
gTGCCAAAGCGAACAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAcg < 1:999329/289‑1 (MQ=255)
gCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCCcgc > 1:845722/1‑288 (MQ=255)
gcAAGCCGCAACAGCAACAGGCTAATGCGGAACCATAAGAACAGGTCGATCGGCGAAAAGCCGCCGTCGAAGACGCTATTGACCGTGCCAAAGCACGCAAGCTGAAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCTGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACg < 1:809487/289‑1 (MQ=255)
cAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCAATTGCGCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAG‑AACAACAGGTCGATCCGCGCACCGACGCCCAACAAGCCGCCCTTGCCCACGACCAAGTCCGCAAACCGGAACAGCACCCGGCCTATGCGGAACCAGAAGCACAGGTCGATCCCCCCATACTCACCGTCCAACCGGCTATTGCACGCGCCaaaacgacaacgacggctcagc > 2:38935/1‑270 (MQ=9)
accggctaagtgggAACCAGACGAACGGGTCGATCCGCGCAACGCCGCGAGCGAAGCCGCGATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCaa < 1:883847/277‑1 (MQ=17)
aacgaggccaTCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGGCCGTGGAAAAGCACGCAAGCTGGAACAGCAACAGGCTAATTCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATGGCCCGAGCCAAAGCGCGCAAGCGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaaga < 1:38935/280‑1 (MQ=255)
aCAGGGCGATCCGCGCAAAGCCGCCGGCGAAGACGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaaga < 1:760725/288‑1 (MQ=255)
aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAGCAGCAACAGGCTAATGCGGTACCAGAAGAACa > 1:248739/1‑289 (MQ=255)
gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCACGCAGAGCTGCCGTCGCACACGCTATCGGCCGAGCCAAAGCCCGCAAGCTGGCACAGCAACACGCTACTACCGCAGCAgaagaagcgg > 2:580555/1‑285 (MQ=14)
aTCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCCAGAAAGCTGGAACAGCAACAGGCTCATGCGGTACCAGAAGAACAGGTTGa > 1:1120393/1‑289 (MQ=255)
tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCaa > 2:1125897/1‑243 (MQ=255)
tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCaa < 1:1125897/243‑1 (MQ=255)
aGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCGATTGCACGCGCCAAAGCACGAAAGCTGGAACAGCAACAGGCTAATGAGGTACAAGAAGAACAGGTTGAACCGCGCAAAACGGCAATTGc > 1:821903/1‑288 (MQ=255)
tATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACCGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCt > 1:706700/1‑289 (MQ=255)
ttGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTAt < 1:814162/289‑1 (MQ=255)
ttGCCAGTGCCAAAACACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑ACCAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCGGGAACGGCAACCGGCTAATGCGGAACCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTAt < 1:319265/289‑1 (MQ=255)
tGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGACCAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGACGCGGCTATTGCCCGCGCCAAAGCACGCAAGCTGGCACAGCCACAGGCGAATGCGGTACCAGAAGAACAGGTTGAACCGCCCAAAGCGGCAGGTGCCGCGGCCATTCCCcg > 2:878172/1‑288 (MQ=17)
tGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCTGTCGCCGCGGCTATTGCCAGCGCCAAAGCACCCAAGCAGGAACAGCAACAAGCTAATGCGGTACCCGAAAACAAGCTTAAAACGCCACACGCGGCAGTTGCCGCGGCTAttctccc > 2:411192/1‑283 (MQ=17)
tGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAgaagaa > 1:35782/1‑244 (MQ=255)
tGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCcgc > 1:817045/1‑289 (MQ=255)
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GCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCA‑AAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAG‑AACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGC > NC_000913/1708517‑1709093
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
