Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F9 I0 R1
|
80 |
116.8 |
2384848 |
97.0% |
2313302 |
226.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,576,077 |
C→A |
14.7% |
D515Y (GAT→TAT) |
yddB ← |
putative TonB‑dependent outer membrane receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,576,077 | 0 | C | A | 14.7%
| 186.9
/ 3.0
| 62 | D515Y (GAT→TAT) | yddB | putative TonB‑dependent outer membrane receptor |
| Reads supporting (aligned to +/- strand): ref base C (45/6); new base A (2/8); total (48/14) |
| Fisher's exact test for biased strand distribution p-value = 3.71e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AGTAATGGTGGTTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTAT > NC_000913/1575847‑1576313
|
aGTAATGGTGGTTTTAGTCGCGCTGTCGGTACGATTGCTTTTGATAATTTGATCATGCGATTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGTTTTTCTGCTGCTGTCCCATTGCCAGTTCATCGTTATCAGGCGTTTTCAAATCC‑TG‑ATCACGCGTCAGAGTTTTCTTACCTGTTACCGATTCCGT‑CCAGCTATTACGGATATCACGTTATCCCATTTCacgcatct > 1:372496/1‑232 (MQ=255)
aGTAATGGTGGTTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAatat > 2:110312/1‑239 (MQ=255)
aGTAATGGTGGTTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAatat > 2:55195/1‑239 (MQ=255)
aGTAATGGTGGTTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAatat > 1:563173/1‑239 (MQ=255)
aGTAATGGTGGTTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CAAGCTATTGCGGATCTCACGTAATCCCATATCAAGAatat > 1:1065844/1‑239 (MQ=255)
tAATGGTGGTTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATAtt > 1:592613/1‑238 (MQ=255)
tAATGGTGGTTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATAtt > 2:124897/1‑238 (MQ=255)
tAATGGTGGTTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATAAAGAATAtt > 2:949385/1‑238 (MQ=255)
tggtggTTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTccc > 2:553358/1‑238 (MQ=255)
tggtggTTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTccc > 2:337557/1‑238 (MQ=255)
gtggtTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGcc > 2:651016/1‑239 (MQ=255)
gtTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATa > 2:1090785/1‑239 (MQ=255)
ttttAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAg > 2:407447/1‑239 (MQ=255)
tttAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCTGCCATAGt > 2:846968/1‑239 (MQ=255)
cgcTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTta > 2:273506/1‑239 (MQ=255)
gTCGGTACGATTTCTTTTGCTGTTTTGATCATGCGCTTCACGGTAAAAATAGTTTGCACGCGCAATAACTTTCTTACCGATTTTCTGCTGCAATCCCATTGCCATTTCATCTTTATAAGGCTTTTTAAAATCC‑TG‑ATAACGCGTCAGATTTTTTTTACCTAATACCTATCCCGT‑CCAGCTATTGCGGATATAACTAAACCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAAc < 2:563173/239‑1 (MQ=255)
tGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATc > 2:216931/1‑239 (MQ=255)
tGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCACATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAAta > 1:1090410/1‑238 (MQ=255)
tCATGCGCTTCACGTTAAACATAGTTTGCACGCGAAATAACGTTCTTACCGATTTCTTGCTGCAACCCCATTGCCTTTTCATCTTTAAAAGGCTTTTTAAAATCC‑TG‑ATACCGCGTCATATTTTTATTACCTAATACCGATTCCGT‑CCAGCTATTGCGAATATCACGTACCCCAATATAAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAg < 2:592613/238‑1 (MQ=255)
gcgcTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCaaaa > 2:372333/1‑239 (MQ=255)
gcTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAat > 2:1078909/1‑239 (MQ=255)
aaCATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCg > 2:449967/1‑239 (MQ=255)
aTAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCAGATGCAATCCCATTGCCAGTTCACCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCACAGTTTTATTACCAGATACCGATTCCGT‑CCAGCTATTGCGGATATCAAGTACTCCCATATTAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATAACTGTAGCTTGATTATCAACAATATCCCAATCCgc > 2:993454/1‑236 (MQ=255)
ttGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATaaa > 2:1190509/1‑238 (MQ=255)
ttGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTCATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATaaa > 1:1159125/1‑238 (MQ=255)
aatagcaagcAATACCTTTCTCACCTATTTTCTTCTGCACCCCCATTGCCACTTCTTCTTTATAAGGC‑TTTTTAAATCCTTG‑AAAGCGTTACAGTTTTTTTTTACCTAACCCCTATCTGCC‑CCAGCTATGGCGGATTTATCTAAACCCTATATCAAAAATTTTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAg < 1:831976/231‑1 (MQ=255)
gaaaTAACTTTCTTACGGATTTTCTCCTCCACCCCAATTGCCA‑TTCAATGTTAAAAAGGCTTTTCAAAATC‑TGAAAAACGCGTCAGATTTTTATTCCCGGATACCGATCCCGC‑CCACTTTTTGCGAATACCACTTAACCCAATACAAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCgggg < 2:12770/236‑1 (MQ=255)
tttttgtACCGTTTTTCCGCTCAACTCCCATGGCCATTTATTCGTTATAGGTCTTTTACAAACCC‑AT‑ATAACGCGTAAGATTTTTATTCCTTGATCCCGTTTCCGC‑CCAGCTTATGGGAATATCACGTAACCCAATATCAAAAATTTCCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATtg < 1:337557/233‑1 (MQ=255)
ctttcttcCCGTTTTTCTGCTACAACCCCCTTCCATTTTCATGTTTATAGGTCGTTTTCAAATCT‑TT‑ATACCGCGTCATTTTTTTATTCCTTGATACCGACTCTGT‑CCAGTTATTGCGATTATCACATAATCCCATATAAAGATTTTTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATtg < 1:449967/237‑1 (MQ=255)
cTTGCCGATTTTCTGCGCCAAGCGCATGGCCAGTTATTTGTTAGAGGTCGTGTTGAAATGT‑TT‑AAAGTGCGTCATATTTTATTTACCTGAT‑CGGGTTCCATCCCAGTTATTGGAGCTACAAGGAAATCCCAAATAAAAATTTTGCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGt < 1:369642/239‑1 (MQ=255)
ttACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAACGCGCGGGGAGATATTGTGGtt > 2:169729/1‑239 (MQ=255)
ttACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCTCGGGGAGATATTGTGGtt > 2:786878/1‑239 (MQ=255)
ttACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGgaga > 2:831976/1‑229 (MQ=255)
ttACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATAATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGTTATTGTGGtt > 2:159314/1‑239 (MQ=255)
aCCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTg > 2:1111707/1‑239 (MQ=255)
aCCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTg > 2:311156/1‑239 (MQ=255)
aCCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGATTTCATATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATAAAGAATATTCCCGACATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTAGATTAGCAAAAATAGCACTTTACTACATAAATCGTGGGGAGAGTTTGTGTTTTg > 1:255576/1‑239 (MQ=255)
tCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAg > 2:923805/1‑239 (MQ=255)
ctgcAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTg > 2:1071677/1‑238 (MQ=255)
ttCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACg > 2:902772/1‑238 (MQ=255)
tCATCGTTAAAAGGTGTTTCAAAATCC‑TA‑AAAACCGGTCAGTTTTTTATTCCCTAATCCCGATTCCGC‑CCAGTTTTGGGAGATATCACAAAACCAAATAAAAAAATTATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGcc < 1:110312/239‑1 (MQ=255)
taAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTaa > 2:617061/1‑239 (MQ=255)
ggCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGATATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGCTGTCATAGCCATACCGCCCGCCGCGCATTAATg > 1:105307/1‑238 (MQ=255)
cGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGac > 2:863532/1‑238 (MQ=255)
ttttCAAATCC‑TG‑ATAACGAGTCAGAGTTTTATTACGTGACACCGATACCGT‑CCAGCTATTGAGCATATCACGTACTCCCATATCAACAATATTCAGACGATAGTAACGGTTATAACTCGCTGTACTCACAGCAGCTTGATTAGCAAACATATCCAATTCCGTACTATAGAGCGGGCCGTTATCGTGGTTTGCCAGATCAGTATCATAGTCATACCGCACGCCGGGCATTACTggaaca > 1:223426/1‑234 (MQ=255)
aataccgaaTAACGGGTCATTTTTTTTTACCCTAATACCGCTTCCTA‑CCAGCTATTGCGAATAACACAAACCCCAATATAAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACg < 1:273506/231‑1 (MQ=255)
cgcgTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATaaa > 2:475058/1‑152 (MQ=255)
gTCAGATTTTATTTGCCTAATACAAATTCCCT‑ACATTTATTGCTAATATAACGTACCCCAAAATAAAAAATTTTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGAt < 2:372496/238‑1 (MQ=255)
tttttatcccgcgatcctcaTTCCGT‑CCAGTTATGGCGTATATCATTTCACCCTATACCATGACTCTCCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCat < 1:786878/220‑1 (MQ=255)
aTACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAg > 2:945255/1‑239 (MQ=255)
aTACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAg > 2:425660/1‑239 (MQ=255)
aTTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATaa > 2:839383/1‑71 (MQ=255)
ttCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGGAACGGTTATAACCTGCTGTAATCATTGCGGTTTGACTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGAGGTTTGACAGATAGTTGTCATAGGCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGAGATCAGCCATATACGGCGTGTAGTTGCCaa > 2:23643/1‑239 (MQ=255)
gT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTc > 2:721783/1‑238 (MQ=255)
t‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTccc > 2:520554/1‑239 (MQ=255)
acttatgtggaatatCACGTACTCATAAAAAAAAAATATCACCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAgg < 1:520554/228‑1 (MQ=255)
cTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAggcg > 2:522880/1‑239 (MQ=255)
gCGGATATCCCGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGGTATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCCGGCGGcatt > 1:371610/1‑239 (MQ=255)
atatCACAAAACCCCATAACAAAAATTTTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGC‑AAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGcctttacct < 1:171429/239‑1 (MQ=255)
cACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGC‑AAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTAt > 2:171429/1‑239 (MQ=255)
acagtaatacAATAATCTTGCCGCCAGAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTaa < 1:617061/230‑1 (MQ=255)
aTCCCACAACAAAAATATTCCCGCCATGGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGTTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGAGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTaa < 1:1078909/239‑1 (MQ=255)
tatCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAatggta > 1:1003460/1‑239 (MQ=255)
aacAAGAATATCCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAatggtat < 2:915139/237‑1 (MQ=255)
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AGTAATGGTGGTTTTAGTCGCGCTGTCGGTACGACTGCTTTTGCTGATTTGATCATGCGCTTCACGGTAAACATAGTTTGCACGCGCAATAACGTTCTTACCGATTTTCTGCTGCAATCCCATTGCCAGTTCATCGTTATAAGGCGTTTTCAAATCC‑TG‑ATAACGCGTCAGAGTTTTATTACCTGATACCGATTCCGT‑CCAGCTATTGCGGATATCACGTAATCCCATATCAAGAATATTCCCGCCATAGTAACGGTTATAACCTGCTGTAATCATTGAGGTTTGATTAGCAAAAATATCCCATTCCGTCATAAAGCGCGGGGAGATATTGTGGTTTGACAGATAGTTGTCATAGTCATACCGCACGCCGGGCATTAATGACACATTACGCCAGCTAATGCGATCCGCCATATACAGCGTGTAGTTGTCAATTCCCAGGCGGCCTTTACCTTTATGGTAAATGGTAT > NC_000913/1575847‑1576313
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
