Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F28 I0 R1
|
54 |
59.4 |
1320120 |
91.9% |
1213190 |
218.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,024,816 |
A→C |
17.0% |
V3G (GTG→GGG) |
dsrB ← |
uncharacterized protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,024,816 | 0 | A | C | 17.0%
| 108.6
/ 2.7
| 56 | V3G (GTG→GGG) | dsrB | uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base A (26/19); new base C (5/6); total (31/25) |
| Fisher's exact test for biased strand distribution p-value = 5.14e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGC‑CTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGTCTATACTTAAGAGATGCCAGGCGGACTTAACGACTGGCGGCAACAACAGAGTAACGGTTGCGAGGAAAGATGATGAAAACCGCAAAAGAGTACAGCGATACCGCAAAACGTGAGG > NC_000913/2024596‑2025028
|
ttCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGC‑CTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTc > 2:100901/1‑226 (MQ=255)
gtggtTTCACACCAGTCAGGCTTAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTCATGCCCTGCTTCATTAAAGAACCAGATGCCGATCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGC‑CTTCACTAAACTCCTCAACTGCCAGCACCACGCCAGGCCGCCCCGGAACGCCAACCGATTTGACGGTTCACCCATCACTCCACTTACTTGTTTtcct > 1:601422/1‑228 (MQ=255)
ggtTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGC‑CTTCACTAAACTCCTCAAATGCCAGGACCACGCCAGGACGAGCCGGACCACCATCCGGTTTTACTGTTACCCGATCATTCACCTTCATCGTTTtcctcc > 1:518558/1‑228 (MQ=255)
tCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCGGCGACACCAGGTACATTGTGC‑CTTCACTAAACTCCTCAACTGCCAGAACCACGCCAGGACCACGCGGACCCCCATCCGCATTGACTCTTACCCAATCATTCACCCTCAACCGTTtcctccctgg > 1:338087/1‑224 (MQ=255)
tCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGC‑CTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCCCCTCCATCGTTTTCCTCCtgtg > 2:526812/1‑228 (MQ=255)
gTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCACATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGAACATTGTGC‑CTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACCCGGACCCCCATCCGTGTTGGCTGTTACCCGATCATTCCCCTTCACCGTTTTCCTCCTGTGGCtttttt > 1:381766/1‑225 (MQ=255)
aTAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGC‑CTTCACTAAACTCCTCAACTGCCCGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCTTTCACCTTCATCGTTTTCCTCCTGTGGCTTTTTGCCAggtcata > 1:26118/1‑222 (MQ=255)
ctctGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGC‑CTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTc > 2:512081/1‑227 (MQ=255)
ctctGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGC‑CTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACCCGGACCGCCATCCGTTTTGACAGTTACCCGATCATTCACCTTAATCGTTTTCATCCTGTGGCTTTGTGcccggttaaaaaaaatccg > 1:324383/1‑211 (MQ=255)
tGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGC‑CTTCACTAACCTCCTCAACTGCCAGTACCACGCCAGGCCGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGATTTCCCACTGTGGCTTTGTGCCAGCGGTGAACAATTTCGtt > 2:424266/1‑227 (MQ=255)
cTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGC‑CTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGtttt > 2:328251/1‑227 (MQ=255)
cTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGC‑CTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGCCTTTGTGCCAGGGTAGACAAATTTCGttttt > 1:152028/1‑228 (MQ=255)
cTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGC‑CTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCCCCTGTGGCTTTTTGCCCGTGTAGAACAATTTCGttttt > 1:3946/1‑228 (MQ=255)
tctcCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGC‑CTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGCTCTGACTGTTACCCGCTCATGCCCCTTAATCGATTTCCTCCTGTGGCTTTGTGCCCGTGTAGAACAATTTCGTTTTTCt > 2:308487/1‑227 (MQ=255)
tcCACAAAGAATCCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGC‑CTTCACTAACCTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGc < 2:514382/228‑1 (MQ=255)
tCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGC‑CTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGAAGAACAATTTCGTTTTTCTGGCAGCGCCAGccgcccg > 2:16950/1‑228 (MQ=255)
cTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGCAACCAGGTACATTGTGC‑CTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCCCCTTCATCGTTTTCCTCCTGTGGCTTTTGTCCAGTTTAGAACACTTTCGTTTTTCTGGCAACCCCCGgcccgccagaggcg > 1:548717/1‑217 (MQ=255)
cTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGGACATTGTGC‑CTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGGTTTCCTCCTGTGGCTTTGTGCCAGTGTCGAACAATTTCGGTTTTCTGGCAGCGCCGGGcgcgcgcgtgggcgagt > 2:421687/1‑217 (MQ=255)
cATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGC‑CTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTtct > 2:447088/1‑228 (MQ=255)
ttaaaaaacacggttcggggggggTTGTGTTCCAGCGAAACCAGGTCCATTGGGC‑CTTCACTAACCTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCg < 1:537649/207‑1 (MQ=255)
ttAAAGAACCAGATGCCGAGCGGGTTGTCTTCCAGCGAAACCAGGTACATTGTGC‑CTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCg < 2:197296/228‑1 (MQ=255)
ttAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGC‑CTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGGCGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCAGCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCT‑GCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGa < 2:158975/228‑1 (MQ=255)
tgaaaGAACAAGATGCGGAGCGGGGAATCTTCCAACGAAGCCAGGTACAGTGGTC‑CTCCTCTAACCTCCTCACTTGCCAGTACCACGCCAGGACGCCGCGGACCGCCATCCGTTTTGGCTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTcgcg < 1:141934/226‑1 (MQ=255)
aaaGCACCAGATGCCTGGCGGGTAGCCTTCCAGCGAAACCAGGTACATTGTGC‑CTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGAc < 2:439439/228‑1 (MQ=255)
aaaGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTCCATTGTGC‑CTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGa < 2:186255/227‑1 (MQ=255)
gAACCAGAGGCCGAGCGGGGAGTCTTCCAGCGAAACCAGGTACATTGGGC‑CTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGt < 2:339703/228‑1 (MQ=255)
aaaCCAGGTGCCGCGCGGGTATTCTTCCAGCCAAACCAGGTCCATTGGCC‑CTTCCCTAAACTCCTCAACTGCCCGTCCCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGt < 1:16950/227‑1 (MQ=255)
aaaCCAGCTGCCGGGCGGGTAGTCTTCCAGCGAAACCAGGTACATGTGGC‑CTTCACAAAACTCCCCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGt < 1:328251/227‑1 (MQ=255)
cccgATGCCGAGGGGGTTGTCTTCCCGCGAAACCAGGTACATTGTGC‑CTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGTCta < 1:264963/225‑1 (MQ=255)
ccAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGC‑CTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTCTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCATGCGCGCGCGGGTGCTGATTTTCTAGCAGGTCta > 2:595888/1‑228 (MQ=255)
ccAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGC‑CTTCACTAAACCCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGTCta < 2:437276/228‑1 (MQ=255)
ggTAGTCTTCCAGCGAAACCAGGTACATTGTGC‑CTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCTCCCGGCGCGCGCGAGTGCTGACTTTCTCGTCGGTTTACACtataaagtgtc > 1:352781/1‑218 (MQ=255)
ttttCCAGCAAAACCAGGGCCATT‑TGCGCTTCCCTAAACCCCCCAACGGCCCGTCCCCAGCCAGGACGCCGCGGACCGCCATCCGGTTTGACTGTTTCCCGATCATTCCCCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGTCTATACTTAAGAGATGCCAGGc < 1:447088/226‑1 (MQ=255)
aTTGTGC‑CTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTtgtg > 2:282269/1‑118 (MQ=255)
ttGTGC‑CTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGc < 1:282269/118‑1 (MQ=255)
ttGTCC‑CTCCACTAACCGCCCCAGCTGCCCGTACCACGCCCGGACGACGCGGACTGTCATTCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCAGGCAGCGCCAGGCGCTCGCGAGTGCTGATTTTCTCGACGGTCTATACTTAAGAGATGCCAGGCGGACTTAACGACTGGCGGcaa < 1:45771/227‑1 (MQ=255)
c‑cTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGCGTGCTGATTTTCTCGACGGTCTATAATTAAGAGATGCCAGGCGGCCTTAACGACTGGGGGCAACAACag > 2:563924/1‑228 (MQ=255)
aaaCTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGTCTATCCTTAAGAGAGGCCAGCCGGCCTCAACGACTGGGGGCAACACCAGGGTacagg > 1:107663/1‑224 (MQ=255)
ccccaccTGCTAGTACCCCGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTGCCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGTCTATACTTAAGAGATGCCAGGCGGACTTAACGACTGGCGGCAACAACAGAGTAACGGTTGCg < 1:182739/222‑1 (MQ=255)
tcAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGGGCTGATTTTCTCGACGGTCTATACTTAAGAGATGCCAGGCGGACTTAACTACTGGCGGCAACACCAGAGTAACGGTTGCGAg > 2:182739/1‑228 (MQ=255)
cgCCAGTCCCACGGCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTTCCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGTCTATACTTAAGAGATGCCAGGCGGACTTAACGACTGGCGGCAACAACAGAGTAACGGTTGCGAGGAAAg < 2:370235/227‑1 (MQ=255)
ccaagccaagACGACTCTGACCGCGATCCGTTTTGACTGTTACCCGATCATTCCCCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGTCTATACTTAAGAGATGCCAGGCGGACTTAACGACTGGCGGCAACAACAGAGTAACGGTTGCGAGGAAAGATGATGaa < 2:352781/228‑1 (MQ=255)
cccggacgcccgggACCGTCCTCCTTTTTGACTTTTACCCGGTCATTCCCCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGTCTATACTTAAGAGATGCCAGGCGGACTTAACGACTGGCGGCAACAACAGAGTAACGGTTGCGAGGAAAGATGATGAAAACCg < 1:300505/216‑1 (MQ=255)
ggACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGTCTATACTTAAGAGATGCCAGGCGGACTTAACGACTGGCGGCAACAACAGAGTAACGGTTGCGGGGAAAGATGATGAAAACCCCaa > 2:115970/1‑228 (MQ=255)
gcggcgcgGACCGCCATCCGTTTTGACTGTTACCCTATCATTCACCTTCATCGTTTTCCGCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGTCTATACTTAAGAGATGCCAGGCGGACTTAACGACTGGCGGCAACAACAGAGTAACGGTTGCGAGGAAAGATGATGAAAACCGCaaaa < 1:115970/224‑1 (MQ=255)
cacgcgcgGACCGCCATCCGTTTTGACGGTTACCCGATCATTCACCTTCATCGTTTTCCGCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGAAGCGCCAGGCGCGCGCGAGTGCTGATTTGCTCGACGGTCTATACTTAAGAGATGCCAGGCGGACTTAACGACTGGCGGCAACAACAGAGTAACGGTTGCGAGGAAAGATGATGAAAACCGCaaaa < 2:601422/224‑1 (MQ=255)
cgcgGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCa > 2:66043/1‑73 (MQ=255)
cgcgGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGTCTATACTTAAGAGATGCCAGGCGGACTTAACGACTGGCGGCAACACCACAGGAACGGTTGCGAGGAAAGATGATGAAACCACCaaaaagga > 2:424728/1‑224 (MQ=255)
cgcgGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGTCTATACTTAAGAGATGCCAGGCGGACTTAACGACTGGCGGCAACAACAGAGTAACGGTTGCGAGGAACGATGCTGAAAACCGCAAAagagg > 2:270732/1‑227 (MQ=255)
gcgGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAg < 1:66043/73‑1 (MQ=255)
cGCCATCCGTTTTGACTGGTACCCGATCTTTCCCCTTCATCGTTTTCCTCCTGTGGCTTTGGGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGTCTATACTTAAGAGATGCCAGGCGGACTTAACGACTGGCGGCAACAACAGAGTAACGGTTGCGAGGAAAGATGATGAAAACCGCAAAAGAGTACAg < 2:26118/225‑1 (MQ=255)
cATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGCACAATTTCGTTTTTCTGGCAGCGCAAGGCGCGCGCGAGTGCTGATTTTCTCGACGGTCTATACTTAAGCGATGCCAGGCGGACTTAACGACTGGCGGCAACAACAGAGTCACGGCTGCTGGGAAAGCTGATGAAAACCGCAAAAGAGTAAAGCGATAc > 2:552968/1‑228 (MQ=255)
ggcTGTTACCCGATCATTCCCCTTCATCGTTGTCCCCCGGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGTCTATACTTAAGAGATGCCAGGCGGACTTAACGACTGGCGGCAACAACAGAGTAACGGTTGCGAGGAAAGATGATGAAAACCGCAAAAGAGTACAGCGATACCGCAAAACGt < 1:512081/226‑1 (MQ=255)
gACTTTTACCCGATCATTCCCCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGTCTATACTTAAGAGATGCCAGGCGGACTTAACGACTGGCGGCAACAACAGAGTAACGGTTGCGAGGAAAGATGATGAAAACCGCAAAAGAGTACAGCGATACCGCAAAACGt < 2:3946/228‑1 (MQ=255)
tGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGTCTATACTTAAGAGATGCCAGGCGGACTTAACGACTGGCGGCAACAACAGAGTAACGGTTGCGAGGGAAGATTATGAAAACCCCAAAAAAGAAAAACGGAACCCCAAAAccggag > 1:76538/1‑223 (MQ=255)
gTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGTCTATACTTAAGAGATGCCCGCCGGACTTAACGACTGGCGGCAACAACAGAGTAACGGTTGCGAGGAAAAATGATGAAAACGGCAAAAGGGTAACGCGATACCGCAAAACGTCAgg > 2:109552/1‑228 (MQ=255)
|
TTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGC‑CTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGTCTATACTTAAGAGATGCCAGGCGGACTTAACGACTGGCGGCAACAACAGAGTAACGGTTGCGAGGAAAGATGATGAAAACCGCAAAAGAGTACAGCGATACCGCAAAACGTGAGG > NC_000913/2024596‑2025028
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
