Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F27 I0 R1 322 127.1 2757226 91.8% 2531133 223.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 120,299 A→C 14.9% V418G (GTG→GGG)  aroP ← aromatic amino acid transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913120,2990AC14.9% 220.8 / 3.3 98V418G (GTG→GGG) aroParomatic amino acid transporter
Reads supporting (aligned to +/- strand):  ref base A (65/13);  new base C (2/17);  total (67/31)
Fisher's exact test for biased strand distribution p-value = 3.88e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCACCCTGTACGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTACGCACAACGCCGTTACCAGTGCA  >  NC_000913/120088‑120532
                                                                                                                                                                                                                     |                                                                                                                                                                                                                                             
gtcgtggtGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCACCCTGTACGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGGATACCG‑GAATCGCCATTCCTGGGGTCATCAACATAATCACCCGTAC‑CCCCGCCATAAACCacagg‑c                                                                                                                                                                                                                  >  1:177586/1‑239 (MQ=255)
           gATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCACCCTGTACGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTTTCTTTAAACAGATAGCCGATACCTAACACGATCAGCACTA‑CCGGGGTCAGGTATACCG‑AAATCGCCATTCCTCGGGGCATCCACATAATCACCAATAA‑CGCCGCCACAAACAacagg‑cgaaaccagga                                                                                                                                                                                                        >  2:1171174/1‑228 (MQ=255)
           gATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCACCCTGTACGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGGTCAGGGATACCG‑AAATCGCCATTCCTGGGGTCATCAGCCTAATCACCAGTAC‑CCCCGCCCAAAACAACAGG‑CCGATccccg                                                                                                                                                                                                         >  1:667104/1‑234 (MQ=255)
               gCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCACCCTGTACGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACCACAGG‑CGGAACCAGTTAcccc                                                                                                                                                                                                   >  1:740393/1‑238 (MQ=255)
                        aCGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCACCCTGTACGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGTATACCG‑GAATCGCCATTCCTGGGGTCATCAGCATAATCACCCGTAC‑CGCCGCCCTAAACAGCAGG‑CAGATCCAGTTACCCatgggtaaaa                                                                                                                                                                                          >  1:730387/1‑230 (MQ=255)
                        aCGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCACCCTGTACGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAAAAGCAGG‑CAGATCCAGTTACCCACCGGATaaa                                                                                                                                                                                          >  1:1279340/1‑239 (MQ=255)
                           aTTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCACCCTGTACGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACCCGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACACGTAC‑CGCCGCCCTAAAAAGCAGG‑CAGATCCAGTTAACCCACGGGTaaacac                                                                                                                                                                                       >  1:404302/1‑236 (MQ=255)
                             ttACGGGGCGTTGGTGTAAAGATTATTGCCCTCACCCTGTACGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCCGTTACCCAGCGGATAAagcag                                                                                                                                                                                      >  1:866837/1‑238 (MQ=255)
                             ttACGGGGCGTTGGTGTAAAGATTATTGCCCTCACCCTGTACGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGGATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCCTAAACAGCAGG‑CAGAACCAGTTACCCAACGGAGAAaacaaa                                                                                                                                                                                     >  2:863001/1‑237 (MQ=255)
                               aCGGGGCGTTGGTGTAAAGATTATTGCCCTCACCCTGTACGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGGATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCCCCAGAAC‑CGCCCCCCTAAAAAGCAGG‑CAGATCCAGTTACCCACCGGAGAAagcagagc                                                                                                                                                                                   >  1:272755/1‑239 (MQ=255)
                                      tgttgttaaagttttgtgccccTCTCTCTGTGGGGGTGAGGACGAAGAGAGATTAATGCGCTTCTCGGGTTTTGGGGTTTTTCGATAGAAACAGAGAGGCTATACCAAACACGACCAGCACTA‑CGGGAAGCAGGTATACCG‑AAAGCGCCATTCCGGGGGTCATCAGCAAAACCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGaa                                                                                                                                                                             <  2:203676/219‑1 (MQ=255)
                                             tAAAGATTATTGCCCTCACCCTGTACGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAAAACGATCAGCCATA‑CCCGGATCAGGGATAACG‑AAATCGCCCTTCCTGGGGGCACAAACATAATTACCAGTAC‑CGCCGCCCTAAACAACATG‑CAGAACCCATTAACCCACGGATAAAGCAGGGCAGGGGAGctgagt                                                                                                                                                                      >  2:260807/1‑233 (MQ=255)
                                                tttataaggtacagccccTGTAGGGGTGGGGGCGAAGAGAGATTAATGCGTTTTTGCGTTTTTGGCGTTTTTCTCTTTAAACAAATAGCCGATACACAACTGGATCACCCATC‑CCGGGATCAGTTATCCCG‑AAACCGCCATCCGGGGGGCCAGCAGCATAACCACCATTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTAcc                                                                                                                                                                   <  2:1275122/223‑1 (MQ=255)
                                                    tattGCCCTCACCCTGTACGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTGAACAGATAACAGAAACCTAACACGATCAGCCATA‑ACGGGATCAGGAATACCG‑AAATCGCCACTCCTGGGGTCATAAGCATAATCACCAGTAC‑CGCCCCCATAAAAACCAGG‑CAGATCCCATTACCCCCCGGATAAAAAAAAGAAGGGAAGCGAGATACCaacc                                                                                                                                                               >  2:728065/1‑235 (MQ=255)
                                                    tattGCCCTCACCCTGTACGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTTGGGTCATCAGCATAATCACCCATAC‑CCCCGCCCTAAACACCAGG‑CAGATCCCGTTACCCACCGGGTAAACAAGAACAGGGAAAGGAGTTACCAccc                                                                                                                                                               >  2:1012367/1‑236 (MQ=255)
                                                    tattGCCCTCACCCTGTACGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAAAGCAGGGAAGCGAGTTACAAca                                                                                                                                                                >  1:587527/1‑236 (MQ=255)
                                                     tttGCCCTCACCCTGTACGGGTGAGGGCGTAGAGAGATTAAGGCGTTTTTACGGTTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATCCCTAACACGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑Ct                                                                                                                                                            <  1:863001/238‑1 (MQ=255)
                                                       tGCCCTCACCCTGTACGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CCGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCaacc                                                                                                                                                               >  1:1162531/1‑232 (MQ=255)
                                                           cTCACCCTGTACGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGGCATCAGCATAATCACCAGTAC‑CGCCGCCCTAAACAGCAGG‑GAGATCCCGTTAACCAGCGGATAAAACAGAGCCAGGAAGCCGGTTAACACGC‑CTTGTTc                                                                                                                                                       >  1:611102/1‑238 (MQ=255)
                                                                  tGTACGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAAAACGATCAGCCATA‑CCCGGATCAGGTATACCG‑AAATACCCATTCCTGGGGGCCTCAGCCTAATCACCAATACACCCCCCCAAAAAC‑GCAGGCCAGA‑CCCGTTACCCCACGGATAAAACCAGCCAGCGAAGCGAggaacccacccttttctcccgttg                                                                                                                                                 >  2:499990/1‑215 (MQ=255)
                                                                   gTACGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGATTTCTCTTTAAACAGATAGCCGATACCTAAAACGATCAGCCCAA‑CCCGGGTAAGGTATACCC‑AAACCGCCATTCCTGGGGGCCACAGCATAATCACCAGTAC‑CGCCCCCATAAACTACCGG‑CGGAACCAGTTACCCCGCCGACAAAGCCAGCCAGGGGAACGGGTTCCCACCC‑CCTGTGCCTCCCTggg                                                                                                                                              >  2:72113/1‑238 (MQ=255)
                                                                    tACGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGGAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAggg                                                                                                                                                                               >  1:862049/1‑206 (MQ=255)
                                                                    tACGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAACCGATACCTAAAACGATTCGCCATT‑CCGGGGTCAGGGATACCG‑CAATCGCCCTTACTTGGGGCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGAAGG‑CAGATCCAGCTACCCAGCGGCTAAAACGCGGCAGGGAACGGAGATACCCACC‑CCTGTTCCCGCTTgaga                                                                                                                                             >  2:1237062/1‑236 (MQ=255)
                                                                    tACGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGGTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCCTA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGGCATCAGCATAAACACCAGTAC‑CCCCGCCATAAAAAACAGG‑CAGATCCCGTTACCCCCCCGGTAAAACAGAGAAGGGGAGGGGGGTACCCCCC‑CCTTTTCCCCCCTGgcg                                                                                                                                             >  2:1114973/1‑239 (MQ=255)
                                                                        ggTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGTATAACG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGAAC‑CCCCGCCATAAACAGCAGG‑CGGATCCAGTTAACCACCGGAAAAAGCAAGGCAGGGAAGGGAGGTACCACGC‑CTTGATCCCGCTTgggcgaga                                                                                                                                         >  2:1173659/1‑233 (MQ=255)
                                                                         gTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCCGAGCAGGGAAACGAGTTACAACGC‑CTTGTTccgtgcccttttaacc                                                                                                                                        >  1:1275122/1‑225 (MQ=255)
                                                                          tGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAAAGCAGGGAAGCGAGTTACCAACC‑CTTTTTCCTGCTTGGCGCGACgg                                                                                                                                       >  1:960921/1‑239 (MQ=255)
                                                                            aGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCACCGGATAAAGCCGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGACGCGCAGGaa                                                                                                                                     >  1:829255/1‑239 (MQ=255)
                                                                              ggCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGGTCAGGTATACCG‑AAATCGCCATTCCTCGGGTCATCAGCATAATCCCCAGTAC‑CCCCGCCCCAAACAGCAGG‑CCGATCCAGTTACCCCCCGGGTAAACCAGAGACAGGAAACCAGTTACACCCC‑CTTGTTCCGGCTTTGCGCGCCGGaaat                                                                                                                                   >  2:275210/1‑237 (MQ=255)
                                                                              ggCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGGAtt                                                                                                                                   >  1:1080227/1‑239 (MQ=255)
                                                                              ggCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGCAtt                                                                                                                                   >  1:1058498/1‑239 (MQ=255)
                                                                              ggCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGGATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCCGTTACCCAGCGGGTAAAGCAGAGCCAGGAAGCGAGTTACCCCCC‑CCTGTTCCTGCTTGGGGCGAGGGAAtt                                                                                                                                   >  2:1068689/1‑239 (MQ=255)
                                                                              ggCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGGATACCG‑AAATCGCCATTCCTGGGGTCATCAGCAAAATCACCCGTAC‑CGCCGCCATAAACACACGG‑CAGATCCAGTTACCCCACGGGTAAAACCAAGCAGGGAAGCCAGTATCCACGCACTTG‑TCCTGCTTTGcacgcggggaat                                                                                                                                   >  2:1082781/1‑231 (MQ=255)
                                                                              ggCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAAACCGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAAACGCCATTCCTGGGGTCATCAGCCTAAACACCAGTAC‑CCCCGCCATAAACCTCAGG‑CCGACCCAGGTACCCAACGGACAAAACAAGGCCGGGAAACGAGGAACCACGC‑CCTTTTCCTGCTTggaggccacgaaat                                                                                                                                   >  2:553485/1‑227 (MQ=255)
                                                                                  tAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCCTA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACAAAGC‑CTTGTTCCTGCTTTGCGCGACGGGAATTCat                                                                                                                               >  1:663186/1‑239 (MQ=255)
                                                                                        gtttAATGCGTTTTTGCGGTTTTGGCGTTTTTCTTTTTAAACAGATGGCCGTTACCTAACACGACCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCAATTCCTGGGGTCACCAGCATAATCCCCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATgcg                                                                                                                          <  1:535458/236‑1 (MQ=255)
                                                                                        agtttatgcgtttttcgcgggttGGGGGTTTTCTCGTTAAACAAGAAGCCAGTTCCCAAACCGAGCCAGCATACCCGGGAGCAGGAAAGCCG‑AAATCGCTATCCGGGGGGTCATCAGCAAAATCCCCAGTCC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATgcg                                                                                                                          <  2:1342273/218‑1 (MQ=255)
                                                                                         aTTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGGTCAGGACTACCG‑AAATAGCCATTCCTGGGGGCATCAGCATAATCACCAGTAC‑CCCCCCCCTAAACACCAGG‑CCAATCCAAGTACCCACCGGATAAAACACAGCAGGGAAGCGGGTTACCACCC‑CTTGGTCCCTCCTAGCGCGACGGAAATTCaaaagggcc                                                                                                                        >  2:535458/1‑231 (MQ=255)
                                                                                         aTTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTTGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCAAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGcc                                                                                                                        >  1:464224/1‑239 (MQ=255)
                                                                                         aTTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAAAAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGGGAGGTACCACGC‑CTTGGTCCTGCTTGGCGCGGCGGACTTTCATATGCGcc                                                                                                                        >  1:394065/1‑239 (MQ=255)
                                                                                                   ttttACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAAGTATACCG‑AAATCTCAATTCCTTGGGTCAACAGCATAATCACCAGTAC‑CGCCGCCAAAAACAGACAG‑CAAGTCCAGTTACCCCGCGGATAAAAGAGAGCAGGAAAACAAGGTACCACGC‑CTGATTACTACTTGGCGCGAAGGGAATTCATATGAGCCAAGccaccca                                                                                                              >  2:603435/1‑233 (MQ=255)
                                                                                                           cTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCCAATCATCcccc                                                                                                        >  1:589089/1‑237 (MQ=255)
                                                                                                            tttGGCGTTTTCCCAGTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGTATCCCG‑AAACCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAg                                                                                                      <  1:499990/238‑1 (MQ=255)
                                                                                                                    tttcCTCTTTAAACAGATAGCCGATCCCTAACACGACCAG‑CATA‑CCAGGGACGAGTTTCCCGCAAACCCCCATTCAGGGGGTCAACAGCATAACCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTAc                                                                                              <  1:646579/238‑1 (MQ=255)
                                                                                                                             tAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCCGTTGATTACCAGTG‑CAGAt                                                                                   >  1:1283116/1‑239 (MQ=255)
                                                                                                                              aaaCAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAACCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCACATGCGCCAGGCTAATCCTCGCCCAGTTGTTTACCAGGG‑CAGAt                                                                                   >  2:1200255/1‑238 (MQ=255)
                                                                                                                                   gATAGCCGTTACCTAACACGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAACCAGCAGG‑CAGATCCAGTTACCCAACGGATAAAGCAGAGCAGGGAACCGAGTTACCACGC‑CTTGTTCCGGCTTGGCGCGACCGAATTTCATAGTCGCCCGGCTAATCATCGCCCAGCTGATTCCCACTG‑CAGAAaccacc                                                                             >  2:412410/1‑239 (MQ=255)
                                                                                                                                    acagcctatctcaaaCACGATCACCCAAC‑GGGGGATAGGGTAACCCG‑AACTCACCATTCTGGGGCACAACACAAAAATCCCCAGTCC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATAccacca                                                                            <  2:866837/226‑1 (MQ=255)
                                                                                                                                     tagccattccctaccccgacaaGCCATA‑CCGGGACCAGGTAGCCCG‑AACTCGCAATTCCTGGGGTCATCAGCATAATCCCCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATAccacca                                                                            <  1:862539/217‑1 (MQ=255)
                                                                                                                                     tAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGGATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGCCGCGACGAAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAg                                                                           >  1:29953/1‑239 (MQ=255)
                                                                                                                                      agccaatcctaaaaccaagcAGCCAAA‑CCGGGAACAGGTATACCG‑AAATCCCCATTCCTGGGGTCATCAGCATAACCCCCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAgc                                                                          <  1:1068689/220‑1 (MQ=255)
                                                                                                                                            tACCTAACACGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATTCGCAAGGCTAATCATCCCCCAGTTGATTACCAGTG‑CAGAAAccaccacgcacata                                                                    >  2:1125622/1‑231 (MQ=255)
                                                                                                                                            tACCTAACACGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCAtt                                                                    >  1:134901/1‑239 (MQ=255)
                                                                                                                                               ccgaacacaatacacaaaccggggAACAGGTAACCCA‑AAACCGCATTTCCGGGGGTCATCAGCATAATCACCATTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTaa                                                                  <  1:1150422/218‑1 (MQ=255)
                                                                                                                                                 aaCACGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCCTTAACa                                                                >  1:594994/1‑238 (MQ=255)
                                                                                                                                                  acacGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCTCGACGGAATTTCATATGCGCCAGGCTAATAATCGCCCAGTTGATTACCCGTG‑CAGATACCACCAGCGCCATTAAAAg                                                               >  1:67685/1‑238 (MQ=255)
                                                                                                                                                  acacGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACACCCAgcgcacataaaag                                                               >  1:514107/1‑229 (MQ=255)
                                                                                                                                                        tCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGTTAAAGCAGAGCAGGGAAGCGAGTTACCCCGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCCTCCCCCAGTTGATTACCAGCG‑CAGCTACCACCAGCCACCTTAAACGACCGaaa                                                        >  2:789315/1‑239 (MQ=255)
                                                                                                                                                        tCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGAGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCCaaa                                                        >  1:506574/1‑239 (MQ=255)
                                                                                                                                                            cccatccgggacttaGGTATCCCG‑AAACCGCCATTCCTGGGGTCATCAGCATAATCCCAAGTCC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCg                                                     <  1:1237062/225‑1 (MQ=255)
                                                                                                                                                              catccagggatacgttatcCCG‑AAATCGCACTTCGTGGGGGCACAAGCATAACCCCACGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCg                                                     <  1:935621/222‑1 (MQ=255)
                                                                                                                                                                a‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTAATTACCAGTG‑CAGATACAACCAGCGCCATTAACAAACCGAAAGCgaaaac                                                >  2:134410/1‑234 (MQ=255)
                                                                                                                                                                       aTCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCCCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCAATTAAACATCCGAAAGAGGGCCCTggggg                                          >  2:616998/1‑238 (MQ=255)
                                                                                                                                                                        atagggcaatccaaactCGCCTTGCCGGGGTGCATGAGCATAATCCCCAGTCC‑CCCCGGCATAAACAGCAGG‑CAGATCCAGTTCCCCAGCGGATAAAGCAGAGCAGGGAAGCGAGGTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTgggg                                           <  1:716849/222‑1 (MQ=255)
                                                                                                                                                                         cAGGTATCCCA‑AAACCGCCAGCCCGGGGGACATCAGCATAACCACAAGTTC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCaa                                        <  1:1355796/239‑1 (MQ=255)
                                                                                                                                                                          cgggtaacccaaaaccccctttCCGGGGGCAAACAGCAAAACCCCCGGTCC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCaa                                        <  1:1114973/219‑1 (MQ=255)
                                                                                                                                                                          aGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAg                                       >  1:932382/1‑239 (MQ=255)
                                                                                                                                                                           ggTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGCCGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAACCGGACCCTGGGGCCAgg                                      >  1:895984/1‑239 (MQ=255)
                                                                                                                                                                              ttctcagataccgccttctggggggTCATCACAATAGCCCCCAGCTC‑CCCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCATAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCACCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAgg                                      <  2:514107/216‑1 (MQ=255)
                                                                                                                                                                                   g‑AAATCGCCATTCCGGGGGTAATCAGCATAATCCCCAGTAC‑GGCCGCCATAAACAGCAGG‑CAGCTCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAAt                              <  1:1082781/239‑1 (MQ=255)
                                                                                                                                                                                   caaaagccccATTCCGGGGGTCACCAGCATAACCACCAGTCC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTaa                               <  1:275210/231‑1 (MQ=255)
                                                                                                                                                                                   aaaagggacagtgccggggtTCACCAGAAAAAACCCCAGTCC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTaa                               <  1:727453/223‑1 (MQ=255)
                                                                                                                                                                                       aTCTCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATATAGCCGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGCCGGAATTTCATATGCGCCAGGCTAATCATCGCCAAGTTGATTAACAGTG‑CAGATACCCCCCGCGCCATTAAAACGACAAAAGCGGACTCTGGGGCAATGGAGTTactaat                           >  2:573493/1‑234 (MQ=255)
                                                                                                                                                                                       aTCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGGGACACA‑ACAACCACCGCCATTACAAGGCCGAAAGCGGACTCTGGGGAAAGGAAGTTAACCAg                           >  2:470002/1‑239 (MQ=255)
                                                                                                                                                                                       aTCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGCG‑CAGATACCACCATCCCCATTAAAAGTCCGCAAGCGGCACCTGGGGAAAAGAAGTTAATCAg                           >  2:175978/1‑239 (MQ=255)
                                                                                                                                                                                       aTCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCACGTTGATTACCAGTG‑CAGATACAACCAACGCCATTAACAGCCCCAAAGCGGACTCTGGGGCAAGGTGGTTATTCAg                           >  1:898626/1‑239 (MQ=255)
                                                                                                                                                                                        tCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAACCCGAAAGCGGACTCTGGGGCAAGGAAGTTAATAAga                          >  2:174258/1‑238 (MQ=255)
                                                                                                                                                                                        ccccaaTTCCTGGGGTCATCAGCAAAATCCCCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGt                          <  1:1012367/234‑1 (MQ=255)
                                                                                                                                                                                         ccaacttctgggggTCATCAGCAACATCGCGAGTCA‑CAGCGCCATAAACAGCAGG‑CATATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTa                         <  1:1302235/229‑1 (MQ=255)
                                                                                                                                                                                             aTTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTACGca                     >  1:917143/1‑239 (MQ=255)
                                                                                                                                                                                               tgcTGGGGTCACGAGAAAAACCCCCGGTCC‑CCGCGCCATAAACAGCAGG‑CAGAACCAGGTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTACGcaca                   <  2:134901/237‑1 (MQ=255)
                                                                                                                                                                                               tCCGGGGGTCATCAGCATAACCCCAAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTACGcaca                   <  1:174258/239‑1 (MQ=255)
                                                                                                                                                                                               tCCGGGGCTCATCAGAATAACCCCGATGAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTACGcaca                   <  2:917143/239‑1 (MQ=255)
                                                                                                                                                                                               tCCCGGGGACATCAGCATAACCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGAAAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTACGcaca                   <  1:149861/239‑1 (MQ=255)
                                                                                                                                                                                                    gggTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTACGCACAACg                >  1:67592/1‑237 (MQ=255)
                                                                                                                                                                                                    gggTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCGAACTCTGGGCCAAGGAAGTTAATCAGTACGCACAAcc                >  1:123987/1‑236 (MQ=255)
                                                                                                                                                                                                         ctcaGCATAATCACCAGTAC‑CGCCGACATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTACGCACAACGCCGTTAc         <  1:1125622/238‑1 (MQ=255)
                                                                                                                                                                                                         atcaGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGG‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACAACCAGCGCCATTAACAGTCCGAAAGCAGACTCTGTGGCAAGGAAGTTAATCATTACGCACAACCCCTTTa          >  1:1184396/1‑238 (MQ=255)
                                                                                                                                                                                                         atcaGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATAccacca                                                                            >  2:43465/1‑172 (MQ=255)
                                                                                                                                                                                                         atcaGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATAccacca                                                                            <  1:43465/172‑1 (MQ=255)
                                                                                                                                                                                                         atcaGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCCTTAACAGTCCGAAAGCGGACTCTGGGGCAATGGAGTTAATCAGTACGCACAACCCCGTTa          >  2:792603/1‑238 (MQ=255)
                                                                                                                                                                                                         atcaGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTACGCACAACGCCGTTa          >  1:26412/1‑238 (MQ=255)
                                                                                                                                                                                                         atcaGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGAAGTTAAACAGAACGAACAACGCCGTTa          >  2:1285165/1‑238 (MQ=255)
                                                                                                                                                                                                         atcaGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGCCCGCAAGCGGACCCTGGGGCAAGGAAGTAAAtacgaacccaccggtctcttaa         >  2:727453/1‑218 (MQ=255)
                                                                                                                                                                                                           caacATAACCCCCAGTCC‑CCCCGCCAAAAACAGCAGG‑CAGATCCAGTTCCCCAGCGGATAAAGCAGAGCAGGGAAGCGAGGTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTACGCACAACGCCGTTACCa       <  2:464224/236‑1 (MQ=255)
                                                                                                                                                                                                                tAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAgcg                                                                         >  2:1305368/1‑168 (MQ=255)
                                                                                                                                                                                                                tAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAgcg                                                                         <  1:1305368/168‑1 (MQ=255)
                                                                                                                                                                                                                aaaTCACCAGCAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTACGCACAACGCCGTTACCAGTGCa  <  1:1171174/238‑1 (MQ=255)
                                                                                                                                                                                                                     |                                                                                                                                                                                                                                             
GTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCACCCTGTACGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTCTCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATA‑CCGGGATCAGGTATACCG‑AAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAC‑CGCCGCCATAAACAGCAGG‑CAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGC‑CTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATCATCGCCCAGTTGATTACCAGTG‑CAGATACCACCAGCGCCATTAACAGTCCGAAAGCGGACTCTGGGGCAAGGTAGTTAATCAGTACGCACAACGCCGTTACCAGTGCA  >  NC_000913/120088‑120532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A