Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F27 I0 R1	322	127.1	2757226	91.8%	2531133	223.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	816,752	T→A	11.8%	intergenic (‑105/‑292)	ybhK ← / → moaA	putative CofD superfamily transferase/molybdopterin biosynthesis protein A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	816,752	0	T	A	11.8%	288.5 / 5.0	92	intergenic (‑105/‑292)	ybhK/moaA	putative CofD superfamily transferase/molybdopterin biosynthesis protein A
Reads supporting (aligned to +/- strand): ref base T (53/27); new base A (2/10); total (55/37)
Fisher's exact test for biased strand distribution p-value = 2.77e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAG‑AG‑AACG‑CGTCCCAGTCCATGCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACATGATTACATAGCGAAAGTGTGGATGGTAAAAATCTCATTTACACGCTAGTATCGGCATAACCACTAAACACTCTAGCCTCTGCACCTGGGTCAACTGATACGGTGCTTTGGCCGTGACAAT  >  NC_000913/816517‑816976

ttATCGGTGGTTGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAG‑AG‑AACG‑CGTCCCAGGCCATGCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑aaa                                                                                                                                                                                                                                <  1:1120287/239‑1 (MQ=255)

  ttCGGTGGGTGTGAAGATCCCCGTAAAACGCAACCCCAAAGACGAAAG‑GTAGAGAAG‑AACG‑CCCCCCCGCCCGTCCCCTCCCCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAgg                                                                                                                                                                                                                              <  2:714384/238‑1 (MQ=255)

   tCGGTGGTGGTGACGATACCCGTTAAACGAACACCCAAAGGCGAAAGTGATGAG‑AG‑AACG‑CGTCCCAGTCCATGCCCCCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAACCAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGa                                                                                                                                                                                                                             <  1:646442/239‑1 (MQ=255)

   gcGGTGGTGGTGACGATCCCCTTTAAACGAAACCCCAAAGAGGAAAGGGAGGAG‑AG‑AACG‑CGTCCCAGTCCATGCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGa                                                                                                                                                                                                                             <  2:118053/238‑1 (MQ=255)

   gcGGTGGGGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAG‑AG‑AACG‑CGGCCCAGTCCATGCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAAATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGa                                                                                                                                                                                                                             <  1:452799/238‑1 (MQ=255)

       tggtggtgACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAG‑AG‑AACG‑CGTCCCAGTCCATGCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTTCCAATATTGAGGATACAAACTATTTTAT‑TCTACCTCA‑AAAAGACGaa                                                                                                                                                                                                                         >  2:1305099/1‑238 (MQ=255)

        ggtgggtgctatccccGTTAAACGAGAACCAAAAACAGAAAGTGATGGG‑AA‑ACCG‑CGTCCCAGTCCATGCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATg                                                                                                                                                                                                                        <  2:584701/226‑1 (MQ=255)

           ggtgACGATCCCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAG‑AG‑AACG‑CGTCCCAGTCCATGCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCa                                                                                                                                                                                                                      <  1:264690/238‑1 (MQ=255)

            gtgACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAG‑AG‑AACG‑CGTCCCAGTCCATGCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCAc                                                                                                                                                                                                                     >  1:118053/1‑238 (MQ=255)

               aCGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAG‑AG‑AACG‑CGTCCCAGTCCATGCCCTCCGCCGAGAG‑CAACGACACGATA‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGCGGATACAAACTATTTTAT‑TTTACCTCA‑AAAGAAAGAAGAACGcag                                                                                                                                                                                                                 >  2:716824/1‑237 (MQ=255)

                cGATACCCGTTAAACGAGAACCCAAAGCCGAAAGGGATGAG‑AG‑AACG‑CGTCCCAGCCCAGGCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTa                                                                                                                                                                                                                 <  1:917270/238‑1 (MQ=255)

                 gATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAG‑AG‑AACG‑CGTCCCAGTCCATGCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGTTACAAACCATTTTTT‑TCTACCTTT‑AAAGGACAATgaaaccaat                                                                                                                                                                                                                >  2:1202001/1‑230 (MQ=255)

                 gATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAG‑AG‑AACG‑CGTCCCAGTCCATGCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGGACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCAACCTCT‑AAAGGACGATGCAAGCTAt                                                                                                                                                                                                                >  2:134557/1‑238 (MQ=255)

                       ccttAAACGGGACCCCAAAGACGAAAGTGA‑GAG‑GGAAACG‑CGTCCCAGTCCATGCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GACTccc                                                                                                                                                                                                        <  2:1137345/237‑1 (MQ=255)

                         ttAAACGAGAACCCAAAGACGAAAGTGATGAG‑AG‑AACG‑CGTCCCAGTCCATGCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCtg                                                                                                                                                                                                      >  1:305465/1‑239 (MQ=255)

                         ttAAACGAGAACCCAAAGACGAAAGTGATGAG‑AG‑AACG‑CGTCCCAGTCCATGCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGAAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGAAACAAACAATTTTCT‑TCTACCTCT‑AAAGAACGATGAACGCTAT‑GCCTCCCtg                                                                                                                                                                                                      >  2:1273357/1‑239 (MQ=255)

                           aaaCGAGAACCCAAAGACGAAAGTGATGAG‑CG‑AACG‑CGTCCCAGTCCATGCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCATCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGGGGATACAAACTATTTTTT‑TCTACCTCT‑AAAggc                                                                                                                                                                                                                             >  1:1352414/1‑214 (MQ=255)

                            aaCGGGCACCCAAAGGCGAAAGTGATGAG‑A‑‑AACGCCGTCCCAGCCCAGGCCCCGCGCCGAGAG‑AAACGACCCGAAC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATGATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCtgatg                                                                                                                                                                                                   <  2:290560/239‑1 (MQ=255)

                            aaCCAGAACCCAAAGACGAAAGGGATGAG‑AA‑CACC‑GCTCCCAGTCCAGGCCCTCCGCCG‑GAGCCAACGAAACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCtgatg                                                                                                                                                                                                   <  2:58926/239‑1 (MQ=255)

                              agagaACCACAAGCAGAACGTGATGAG‑AA‑AACG‑CGCCCCAGTCAATGCACTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTgatgat                                                                                                                                                                                                 <  1:1012652/238‑1 (MQ=255)

                                  aaCCCAAAGACGAAAGTGATGAG‑AG‑AACG‑CGTCCCAGTCCATGCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGACCGCTAT‑GCCTCCCTGATGATGtat                                                                                                                                                                                             >  1:335042/1‑239 (MQ=255)

                                       aaaGACGAAAGTGATGAG‑AG‑AACG‑CGTCCCAGTCCATGCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCAGCTGATGTATATCaa                                                                                                                                                                                        >  1:807001/1‑239 (MQ=255)

                                         aagaggaaaggtgagaaaaaaccg‑cgTCCCGGCCACTCCCCCCCGCGGAGAG‑AAGCCAACCGATA‑AAGACCGGCCAGCGTACGTTTGCGCATATGGTCCCCTGAAGTCAAATTACCCGCGCTACAGTAGAGCAAATTGCGGG‑GAAACAGCA‑ATAAA‑CCTGCAAATATGGAGGATACAAACTATTTTCT‑TCTCCCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATaaa                                                                                                                                                                                        <  2:193918/217‑1 (MQ=255)

                                               aaGTGATGAG‑AG‑AACG‑CGTCCCAGTCCATGCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTaaaa                                                                                                                                                                                 >  1:731026/1‑238 (MQ=255)

                                                              aCG‑CGTCCCAGTCCATGCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATTAATATCAAAGAAAAACCGCCATATTCCCt                                                                                                                                                                   >  2:18570/1‑239 (MQ=255)

                                                                   gtccaacgcaaTGCCCTCCGCCGAGA‑‑CAACGCACCGGTCAAAGATCATCCAGCAAAGGATGCCTCATATAGTTCCCGGGAGTCAGATTACCCGCTATACAGGAGCACAATTTG‑GGG‑GAAAAAGAA‑ATTAACCCTGCAAATATGGAGGAAACAAATTATTTTCT‑TCTACCTCA‑AAGGGACGAGGCAGGCAAT‑CCCTCCGTGATGGTGTATATAAAAGTAAAACCGCCATTTTCCCTTAtt                                                                                                                                                               <  1:434395/229‑1 (MQ=255)

                                                                    tCCCAGTCCATGCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCATTATTGCGGATCCAAACTATTTTCT‑CCTACATCT‑AAAGGACGATGCACGCTAT‑GCACACCTAATGATGTATATCAAATTAAAACCCCCCATTTCCCTTAttt                                                                                                                                                              >  2:434395/1‑238 (MQ=255)

                                                                      ccAGTCCATGCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCGCATGATGTAAATCAAAGTAAAACACCCATTTTCCCTTAATCTg                                                                                                                                                            >  2:673936/1‑239 (MQ=255)

                                                                           ccATGCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCG‑CATTTTCCCTTATTCTGTAg                                                                                                                                                         <  1:1305099/236‑1 (MQ=255)

                                                                               gCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑g                                                                                                                                                                                                              <  2:378921/180‑1 (MQ=255)

                                                                               gCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑g                                                                                                                                                                                                              >  1:378921/1‑180 (MQ=255)

                                                                               gCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCCTTTTCCCTTTTTTTTTAGCGaaaa                                                                                                                                                   >  2:391070/1‑238 (MQ=255)

                                                                                 ccaccgccgAGAG‑AAACGTCAGGATA‑AATACCAGCCAGCGTCGGTTTGCCCATATATTTCCCTGGAGCCAGATTACCCGCGCTACAGAAGCGCAATTTGCGGG‑AAAACAGCA‑ATAAA‑CCTCCAAATATGGAGGATACAACTTATTTTCT‑TCTACCTCA‑AAAGGACGAGGCACGTTTT‑GCCTCCCTGATGATGTATATAAAAGAAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAg                                                                                                                                                 <  1:18570/236‑1 (MQ=255)

                                                                                    ccgccgAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCACTATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGAACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCAc                                                                                                                                              >  1:61445/1‑239 (MQ=255)

                                                                                    ccgccgAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAACCTATTTTCT‑TCTACCTCT‑AAAGGCCGATGCACCCTAT‑GCCTCCCTGATGATGTATATCCAAGAAAAACCGCCATTTTCCCTTAttttttaaggaaaaacaac                                                                                                                                              >  2:1140507/1‑222 (MQ=255)

                                                                                    ccgccgAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCAc                                                                                                                                              >  1:90305/1‑239 (MQ=255)

                                                                                    ccgccgAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCAc                                                                                                                                              >  1:1101244/1‑239 (MQ=255)

                                                                                    ccgccgAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCAc                                                                                                                                              >  1:1070663/1‑239 (MQ=255)

                                                                                    ccgccgAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCAc                                                                                                                                              >  1:157806/1‑239 (MQ=255)

                                                                                    ccgccgAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCAc                                                                                                                                              >  1:422662/1‑239 (MQ=255)

                                                                                    ccgccgAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTAATTCTTTAGCGTAATAGCAc                                                                                                                                              >  1:372002/1‑239 (MQ=255)

                                                                                            gaaaaaCCACACGAAA‑AAGATCAGCCAGCGTACGATTGCTCATAGAGTTGCCGGGAGTCAAATTACCCGCGCAACGGTAGCGAAAATTGGGGG‑AAAACAGAA‑ATTAC‑CCTGCAAATATTGAGGATACAAACTTTTTTCT‑TCTACCTCT‑AAAGGACGATGCACGTTAT‑GCCTCCCTGATGATGTATATCAAAGAAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCAt                                                                                                                                        <  1:673936/234‑1 (MQ=255)

                                                                                              caaaCGACAAGCAC‑AAGCTCACCAAGCGTACTATTGCGCATAGTGTTTACGGGAGTCAGATTACCCGCGACACAGTAGCCCAAATTGGGGG‑AAAAAAGAA‑ATTAC‑CCTGCCAATATTGAGGATACAAACTTTTTTCT‑TCTACCTCT‑AAAGGACGTTGCACGCTAG‑GCCTCCCTGAGGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGa                                                                                                                                      <  1:716824/236‑1 (MQ=255)

                                                                                               cAAAGACACGAAA‑AAGATCGGCCAGCGAACAATTGCCAAAATATTTTCCGGGAGCAAGATTACCCGGGCTAAAGTAGCGAAATTTGGGGG‑AAAACAGAA‑ATAAA‑CCTGCCAATATTGAGGTTACAAACTTTTTTTT‑TCTCCCTCA‑AAAGGACGATGCACGTTAT‑GCCTCCCTGATGATGTATATAAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACg                                                                                                                                    <  1:1202001/239‑1 (MQ=255)

                                                                                                  cGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCta                                                                                                                                 >  1:762644/1‑239 (MQ=255)

                                                                                                  cGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACAATCATGACCCta                                                                                                                                 >  2:802798/1‑239 (MQ=255)

                                                                                                       cGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGAAAAACCGCCATTTTCCCTTATTCTGTAGCGAACAAGCCACATCATGACACTATATAc                                                                                                                            >  2:86458/1‑239 (MQ=255)

                                                                                                       cGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGAAAAACCGCCATTTTCCCTTATTCTGTAGCGAAAAACCACAAtaaaaacgccaaaaaa                                                                                                                            >  2:578142/1‑224 (MQ=255)

                                                                                                                   agccagcGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACATGATTACATa                                                                                                                 >  1:1221095/1‑239 (MQ=255)

                                                                                                                     ccagcGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GGAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAAAAGCACAATCATGACCCAATAAAAATGATAACAAAgg                                                                                                               >  2:552114/1‑238 (MQ=255)

                                                                                                                     ccagcGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAAAAGAACGACCATGAAGCAATATACAAAATTaaaaaga                                                                                                               >  2:487154/1‑233 (MQ=255)

                                                                                                                         cGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACATGATTACATAGCGcaa                                                                                                           >  1:354431/1‑239 (MQ=255)

                                                                                                                                             ttCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACg                                                                                                                                                                                                                    <  1:1291433/115‑1 (MQ=255)

                                                                                                                                             ttCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACg                                                                                                                                                                                                                    >  2:1291433/1‑115 (MQ=255)

                                                                                                                                              tCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACATGATTACATAGCGAAAGTGTGGATGGTAAAAATCTCa                                                                                      >  1:1040948/1‑239 (MQ=255)

                                                                                                                                               ccgggatccAGTTTATCCGGGCTAAAGTAGCAAAAATTGCGGG‑GAAACAGAA‑ATTAA‑CCGGCAAATTGTGGGGATAAAACCTATTTCTT‑TCTACCTCA‑AAAGGGCGGTGCAAGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACATGATTACATAGCGAAAGTGTGGATGGTAAAAATCTCAt                                                                                     <  1:309411/231‑1 (MQ=255)

                                                                                                                                                  ggttgcattttACCCGCGTTACAGTGGCAAAATTTGGGGG‑AAAACAGAA‑ATTAC‑CCTGCCAATATTGATGATAAAAATTTTTTTCT‑TCTCCCTCT‑AAAGGACGATGCACGTTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACATGATTACATAGCGAAAGTGTGGATGGTAAAAATCTCATTTa                                                                                  <  2:1040948/230‑1 (MQ=255)

                                                                                                                                                   gAGTCAGATTACCCGCGCTACAGTAGCGAAATTTGGGGG‑AAAACAGAA‑TTGAC‑CCTGCAAATATGGAGGATACAAACTTTTTTTT‑TCTACCTCA‑AAAGGACGATGCACGCTAT‑GCCTCCCGGATGATGTATATCAAAGAAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACATGATTACATAGCGAAAGTGTGGATGGTAAAAATCTCATTTa                                                                                  <  1:1140507/238‑1 (MQ=255)

                                                                                                                                                      tCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGAACATGACGCTATTTACATGATTAAATAGCGAAAGTGGGGAAGGGAAAAATACCATTTaaac                                                                               >  2:449659/1‑238 (MQ=255)

                                                                                                                                                       gaatttccccGCTCTAGAGTA‑CGAAAATTGGGGGAAAAACAAAA‑ATTAC‑CCGGCAAATTTGGGGGAACAAAACTTTTTTCT‑TCTACCACA‑AAAGGAAGCTCCCCTCTAT‑CCCCCCCTGATGATGTAAAAAAAAATAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACATGATTACATAGCGAAAGTGTGGATGGTAAAAATCTCATTTACACGc                                                                             <  2:157806/231‑1 (MQ=255)

                                                                                                                                                        aGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGCAATAGCACGATCATGACGCTATATACATGATTACATAGCGAAAGGGTGGATGGTAAAAATCTCATTTACACGCt                                                                            >  1:1112611/1‑239 (MQ=255)

                                                                                                                                                        aGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACATGATTCCATAGCGAAAGGGTGGATGGGAAAAATCTCATTTACACGCt                                                                            >  1:305793/1‑239 (MQ=255)

                                                                                                                                                          aTTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACATGATTa                                                                                                                     >  1:696649/1‑196 (MQ=255)

                                                                                                                                                                   gttacattcagtaatatggCGGG‑AAAACATAA‑TTTAC‑CATTCCAATATTGAGGATA‑AAACCATTTTCTATCACCCACA‑AAAGGCCGACGCCGTCTAG‑GCCTCCCTGAGTAATTATATCAAAAAAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACATGATTACATAGCGAAAGTGTGGATGGTAAAAATCTCATTTACACGCTAGTATCGGCAt                                                                 <  2:335042/221‑1 (MQ=255)

                                                                                                                                                                    ttttagttgagaaaatgtgggg‑gAAACAGAATATTAC‑CCTGCCAA‑GTTGGGGTAAAAAAATTTTTTTA‑TGTTCCCCTAAAAGGACGATGC‑CGCTATGGCCTCCCGGATGGTTTATATAAAAGAAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACATGATTACATAGCGAAAGTGTGGATGGTAAAAATCTCATTTACACGCTAGTATCGGCAt                                                                 <  2:354431/220‑1 (MQ=255)

                                                                                                                                                                      aCAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACAt                                                                                                                          >  1:709427/1‑179 (MQ=255)

                                                                                                                                                                        aGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACATGATTACATAGCGAAAGTGTGGATGGTAAAACTCTCATTTACACGCTAGTATCGGCATAACCa                                                            >  1:661419/1‑239 (MQ=255)

                                                                                                                                                                           agccaaaaTTGCGGA‑AAAACAAAA‑TTTAA‑CCCACCAAGTTGGGGGATAAAATCTATTTTCT‑CCAACCTCA‑AAAGGCAGACGCCCGTGAT‑CCCTCCCTTATGATGTATAAAAAATTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACATGATTACATAGCGAAAGTGTGGATGGTAAAAATCTCATTTACACGCTAGTATCGGCATAACCACt                                                          <  1:86458/233‑1 (MQ=255)

                                                                                                                                                                             cgcAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AGAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATCGCACGATCATGACGCTATATACATGATTACATAGCGAAAGTGTGGCTGGTAAAAATCTCCTTTACACGCTAGAATCGGCATAACCACTaaa                                                       >  1:1291944/1‑239 (MQ=255)

                                                                                                                                                                             cgcAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTcc                                                                                                                                                                                                         >  2:160945/1‑93 (MQ=255)

                                                                                                                                                                             cgcAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTcc                                                                                                                                                                                                         <  1:160945/93‑1 (MQ=255)

                                                                                                                                                                             cgcAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTatat                                                                                                                                                                                           >  2:484619/1‑107 (MQ=255)

                                                                                                                                                                             cgcAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTatat                                                                                                                                                                                           <  1:484619/107‑1 (MQ=255)

                                                                                                                                                                             cgcAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCtatata                                                                                                                             >  1:1193559/1‑169 (MQ=255)

                                                                                                                                                                             cgcAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACAt                                                                                                                          >  1:1191696/1‑172 (MQ=255)

                                                                                                                                                                             cgcAAAGTGGGGG‑AAAACGACA‑ATTAA‑CCGCCAAATTTAGGAGATCAAAATTATTTTCT‑TCTACCTTA‑AAAGGACGATGCACGTTAT‑GCCTCCTTGATGAGGTATAACAAAGAAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACATGATTACATAGCGAAAGTGTGGATGGTAAAAATCTCATTTACACGCTAGTATCGGCATAACCACTaa                                                        <  1:134557/238‑1 (MQ=255)

                                                                                                                                                                               cAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGAACGATCATGACGCTATATACATTATTACATAGCGAACGCGTGGCTTGTAAAACTCTCGTTTACACGAAAGAATCGGCAGAACCACAAAaca                                                     >  2:1025781/1‑239 (MQ=255)

                                                                                                                                                                                      cGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACATGATTACATAGCGAAAGGGTGGATGGTAAAAATCTCATTTACACGCTAGAATCGGCATAACCACTAAAAACCCTaa                                               >  2:1071928/1‑237 (MQ=255)

                                                                                                                                                                                           aaaaaAGAA‑ATTAC‑CCTGCCAATATGGAGGATACAAACTATTTCCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACATGATTACATAGCGAAAGTGTGGATGGTAAAAATCTCATTTACACGCTAGTATCGGCATAACCACTAAACACTCTAGCctc                                           <  1:1071928/237‑1 (MQ=255)

                                                                                                                                                                                               cAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCtga                                                                                                                                                                                                     >  2:935118/1‑80 (MQ=255)

                                                                                                                                                                                               cAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCtga                                                                                                                                                                                                     <  1:935118/80‑1 (MQ=255)

                                                                                                                                                                                                     tttAC‑CCGGCAAATATTGAGAAAAAAAACTTTTTCCT‑TCTCCCCCT‑AAGGGACGATGCCCGTTAT‑GCCTCCTTGATGATGTATACCAAAGTAAATCCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACATGATTACATAGCGAAAGTGTGGATGGTAAAAATCTCATTTACACGCTAGTATCGGCATAACCACTAAACACTCTAGCCTCTGCACCTggg                                 <  1:578142/238‑1 (MQ=255)

                                                                                                                                                                                                              gCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACAt                                                                                                                          >  1:1301237/1‑142 (MQ=255)

                                                                                                                                                                                                              gCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACATGATTACATAGCGAAAGTGTGGATGGTAAAAATCTCATTTACACGCTAGTATCGGCCTAACCAATAAAAACCCTATCCTCTCAACCCGGGGCAACGGa                         >  2:160198/1‑239 (MQ=255)

                                                                                                                                                                                                                cAATATTGGGGATAAAACTTATTTTCT‑TCTACCTCA‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATAAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACATGATTACATAGCGAAAGTGTGGATGGTAAAAATCTCATTTACACGCTAGTATCGGCATAACCACTAAACACTCTAGCCTCTGCACCTGGGTCAACTGATa                       <  1:449659/239‑1 (MQ=255)

                                                                                                                                                                                                                         ggATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCa                                                                                                                                                                                                                      >  2:560289/1‑40 (MQ=255)

                                                                                                                                                                                                                         ggATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCa                                                                                                                                                                                                                      <  1:560289/40‑1 (MQ=255)

                                                                                                                                                                                                                             aCAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCtga                                                                                                                                                                                                     >  2:1035672/1‑52 (MQ=255)

                                                                                                                                                                                                                             aCAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCtga                                                                                                                                                                                                     <  1:1035672/52‑1 (MQ=255)

                                                                                                                                                                                                                             aCAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACATGATTACATAGCGAAAGTGTGGATGGTAAAAATCTCATTTACACGCTAGTATCGGCATAACCACTAAACACTCTAGc                                              >  1:846077/1‑203 (MQ=255)

                                                                                                                                                                                                                             aCAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACATGATTACATAGCGAAAGTGTGGATGGTAAAAATCTCATTTACACGCTAGTATCGGCATAACCACTAAACACTCTAGCCTCTGCACCTGGGTCAACTGATACGGTGCTTTTGcc          >  1:659264/1‑239 (MQ=255)

                                                                                                                                                                                                                                      tttCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACATGATTACATAGCGAAAGTGTGGATGGTAAAAATCTCATTTACACGCTAGTATCGGCATAACCACTAAACACTCTAGCCTCTGCACCTGGGTCAACTGATACGGTGCTTTGGCCGTGACAAt  >  1:105222/1‑238 (MQ=255)

TTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAG‑AG‑AACG‑CGTCCCAGTCCATGCCCTCCGCCGAGAG‑CAACGACACGATC‑AAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAGATTATCCGCGCTACAGTAGCGCAAATTGCGGG‑GAAACAGCA‑ATTAA‑CCTGCCAATATTGAGGATACAAACTATTTTCT‑TCTACCTCT‑AAAGGACGATGCACGCTAT‑GCCTCCCTGATGATGTATATCAAAGTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATGACGCTATATACATGATTACATAGCGAAAGTGTGGATGGTAAAAATCTCATTTACACGCTAGTATCGGCATAACCACTAAACACTCTAGCCTCTGCACCTGGGTCAACTGATACGGTGCTTTGGCCGTGACAAT  >  NC_000913/816517‑816976

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A