Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F27 I0 R1 322 127.1 2757226 91.8% 2531133 223.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,668,252 T→C 10.2% S105G (AGC→GGC)  mlc ← glucosamine anaerobic growth regulon transcriptional repressor, autorepressor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,668,2520TC10.2% 305.3 / 3.4 125S105G (AGC→GGC) mlcglucosamine anaerobic growth regulon transcriptional repressor, autorepressor
Reads supporting (aligned to +/- strand):  ref base T (64/43);  new base C (6/9);  total (70/55)
Fisher's exact test for biased strand distribution p-value = 1.71e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 126 total aligned reads displayed.

GCTCCAGCGCCTCGCCGAGCGGCATCTC‑TTTTACATCCTCGTAGAACGGCATGCGATGTACAATACCATTTTCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCATCTCACGGACAATTTTAGTGATACTGGCAGGAGCCAGTTGCGCCAGACGGGAAAGATCGATACGCGAGACTGGACCAAGCTGATC  >  NC_000913/1668015‑1668489
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                               
gctCCAGCGCCTCGCCGAGCGGCATCTC‑TTTTACATCCTCGTAGAACGGCATGCGATGTACAATACCATTTTCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGAAATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAAAGCCAGTTCCTGCGACCCTTCCACCACCAGTTTGCTGCTc                                                                                                                                                                                                                                                >  1:161100/1‑239 (MQ=255)
 ctCCAGCGCCTCGCCGAGCGGCATCTC‑TTTTACATCCTCGTAGAACGGCATGCGATGTACAATACCATTTTCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACTCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCa                                                                                                                                                                                                                                               >  1:1005784/1‑239 (MQ=255)
   ccAGCGCCTCGCCGAGCGGCATCTC‑TTTTACATCCTCGTAGAACGGCATGCGATGTACAATACCATTTTCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGa                                                                                                                                                                                                                                             <  1:213646/239‑1 (MQ=255)
        gcCTGGTCGGGCGGCATTTCTTTTTACA‑CCCCGGAGACCGGCATGTGGTGTACAATACCATTTTCCGTATCAATAATTCCCGGCAAGGGTATGGCAATCGAAGTTAGACGCTCAATTTTTGTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATc‑gcg                                                                                                                                                                                                                                       <  2:50756/239‑1 (MQ=255)
        gcCTCGCCGAGCGGCATCTC‑TTTTACATCCTCGTAGAACGGCATGCGATGTACAATACCATTTTCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATc‑gcg                                                                                                                                                                                                                                       <  1:497512/239‑1 (MQ=255)
        gcCCCGCCGAGCGGCATCTC‑TTTTACATCCTCGTAGAACGGCATGCGATGTACAATACCATTTTCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATc‑gcg                                                                                                                                                                                                                                       <  1:598072/239‑1 (MQ=255)
         ccTCGGCGAGCGGCATCTC‑TTTTACATCCTCGTAGAACGGCATGCGATGTACAATACCATTTTCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGGTAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATc‑gcg                                                                                                                                                                                                                                       <  1:271991/238‑1 (MQ=255)
         ccTCGCCGGGCGTCATCTT‑TTTTACAGTCTCGTAGAACGGAATGCGATGTACAATACCATTTTCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATc‑gcg                                                                                                                                                                                                                                       <  2:161100/238‑1 (MQ=255)
           tCGCCGAGCGGCATCTC‑TTTTACATCCTCGTAGAACGGCATGCGATGTACAATACCATTTTCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCag                                                                                                                                                                                                                                    >  1:487170/1‑239 (MQ=255)
               cGAGCGGCTTCTT‑TTTTCAACCCTCGTAGAACGGCATGCGATGTACAATACCATTTTCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCa                                                                                                                                                                                                                                <  2:733127/239‑1 (MQ=255)
                                 aCATCCTCGTAGAACGGCATGCGATGTACAATACCATTTTCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGTTC‑GGCCAAGGCAAGGAAAA‑TCTcccccg                                                                                                                                                                                                               >  1:689548/1‑236 (MQ=255)
                                    tCCTCGTAGAACGGCATGCGCTGTACAATACCATTTTCCGTATCAATAATTCCCGGCGAGGCTATGACAATACAAACTACACCCTCAAGTTTTTTCTGGAGGCGGATAAAAAAATGATCGATATGGGAAATAATAACATCCCGCAAAGGCAAGTCATCTTTTAACCCCAGTTCCTGCCACTCTTCCCCCTCCAGTTTGCTGCCCATATC‑GCGCAGAGCAAGGAGAA‑TCACCCCGCGAca                                                                                                                                                                                                           >  2:755775/1‑238 (MQ=255)
                                     ccTCGTAGAACGGCATGCGATGTACAATACCATTTTCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACCCTTCCACCACCAGTTTGTTTCCCAAATC‑GCGCCGAGCaaaggctttgccttatacaaa                                                                                                                                                                                                            >  2:923620/1‑219 (MQ=255)
                                     ccTCGTAGAACGGCATGCGATGTACAATACCATTTTCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCGCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGAACGTCATCTTTTAACGCCCATTCCTGCGACTCTTCCACCACCAGTTTGCTGCCCAGATC‑TCCAAGAGCAAGGAAAA‑ACCCCCCGCGAcca                                                                                                                                                                                                          >  2:1338281/1‑237 (MQ=255)
                                       tCGTAGAACGGCATGCGATGTACAATACCATTTTCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTTCGACTCTTCCCCCACCCGTTTGTTGCCCAGATC‑CCCCCGGGCAAGGAAAA‑ACTCCCcccgctaaag                                                                                                                                                                                                        >  2:168557/1‑233 (MQ=255)
                                          taaaaccgctttgcatttACAATCCCATTTTCCGTTTCAAAAATTCCCGGCAAGGTTATGGCAATCGAAGTGAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATgcg                                                                                                                                                                                                     <  2:689548/222‑1 (MQ=255)
                                          tAGAACGGTATTGTATGTAAAATACCATTTCCCGTAACAATAATTCCCGGCAAGGTTATGGCAAGCGAAGTTAGACGCTCAATTTGTTTCGGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCAGCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCCAAGATC‑GCGCAGAGCAAGAAAAA‑TCTCCCCGCGACTAATgcg                                                                                                                                                                                                     <  2:1232872/239‑1 (MQ=255)
                                          tAGAACGGCATGCGTTTTACAATCCCATTTTCCGTTTCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGGCGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATgcg                                                                                                                                                                                                     <  2:1027373/239‑1 (MQ=255)
                                          gaGAACGGCATGCGATGTAAAATCCCATTTCCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATgcg                                                                                                                                                                                                     <  1:1364014/238‑1 (MQ=255)
                                           aGACCGGAATGCGATGTACAATCCCATTTTCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATgcg                                                                                                                                                                                                     <  1:75658/238‑1 (MQ=255)
                                            gAACGGCATGCTATGTACAATACCATTTTCCGTATCAATAATTCCCGAGAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCa                                                                                                                                                                                                   <  1:589183/239‑1 (MQ=255)
                                            aaagggggtgggaggTACAATCACGTTTCCCTTATCAATAATTCCCGGCAAGGTATTGGCAAGCGAAGTGAGACGTTCAAGTTTTTTCTGGGGGCGGAAAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAGGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCa                                                                                                                                                                                                   <  2:874062/225‑1 (MQ=255)
                                               cGGCATGCGATGTACAATACCATTTTCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCagag                                                                                                                                                                                                >  1:96166/1‑239 (MQ=255)
                                                 gCATGCGATGTACAATACCATTTTCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACCCCAGTTCCTGCGACTCTTCCACCACCCGTTTGCTGCCCAGATC‑GCCCAGCGCAAGGAAAA‑TTTCCCCGCGACTAATGCCCAGCGaa                                                                                                                                                                                              >  2:949332/1‑239 (MQ=255)
                                                         tttACAATACCATTTTCCGTTTCAATATTTCCCGGAAGGGTTTTGTATAACGAATATGGAGGCTCAATGTTGTTGTGGTGGCGGAAAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGAAAGTCATCTTTTAACGCCGGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTg                                                                                                                                                                                      <  2:636026/237‑1 (MQ=255)
                                                         tGTACAATACCATTTTCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCCGCAATGGCAAGTCATCTTTTACCGCCAGATACTCCTACCTTTCCACACCCCGTTGCCTGTCCAGATCAGCCCA‑ACCAATGAAAA‑TCCCCCCCAGCCTAATACGCACAGAAAgcaagt                                                                                                                                                                                       >  2:405330/1‑233 (MQ=255)
                                                           tACAATACCATTTTCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCcccc                                                                                                                                                                                                                  >  2:1369977/1‑209 (MQ=255)
                                                           tACAATACCATTTTCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTccc                                                                                                                                                                                                                  <  1:1369977/209‑1 (MQ=255)
                                                            aCAATACCATTTTCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATc‑gcg                                                                                                                                                                                                                                       >  1:17087/1‑188 (MQ=255)
                                                            aCAATACCATTTTCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATc‑gcg                                                                                                                                                                                                                                       <  2:17087/188‑1 (MQ=255)
                                                                tACCATTTTCCGTATCAATAATTCCCGGCCAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACTCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑CCGCAGGTCAAGGCAAA‑TCTCCCCCCGACTAATTCGCAGAGAAAAAACGTGCCCGGCt                                                                                                                                                                               >  2:1103548/1‑239 (MQ=255)
                                                                tACCATTTTCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTGGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAAAAAGTGCCAGGca                                                                                                                                                                               >  2:1042976/1‑238 (MQ=255)
                                                                tACCATTTCCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGCCGCTCAAGTTTTTCCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCt                                                                                                                                                                               <  1:166733/239‑1 (MQ=255)
                                                                     ttttCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGCTCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCcgc                                                                                                                                                                                                               >  1:410877/1‑202 (MQ=255)
                                                                     ttttCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGt                                                                                                                                                                          >  1:367861/1‑239 (MQ=255)
                                                                     ttttCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCACAGAAAGATAGGGCCAGGCTTCAGt                                                                                                                                                                          >  1:961402/1‑239 (MQ=255)
                                                                     ttttCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGAAAGGAAAA‑TCTCCCCGCGACTAATGCGCGGAGAAGGATAGTGCCAGGCTTCAGt                                                                                                                                                                          >  1:212444/1‑239 (MQ=255)
                                                                     ttttCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑CCGCGAAGCAAGGAAAA‑TCTCCCCGCGCCTAATGCGCAAAGAAAAATAGGGCCAGGCTTCAGt                                                                                                                                                                          >  2:623090/1‑239 (MQ=255)
                                                                     ttttCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAAATC‑GCCCAGAGCAAGGAAAA‑TCTCCCCCCGACTAATGCCCGAGGAAAGAAAGTGCCAGGCttacgt                                                                                                                                                                          >  2:1159530/1‑235 (MQ=255)
                                                                     ttttCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTCCGACTCTTCCACCACCAGTTTACTGCTCAGCTC‑GCGCCACGCAAGGAAAA‑TCACCCCGCGAATAATGCGCAGGGAAAGAAAAGGCCAGGCCTccat                                                                                                                                                                          >  2:755970/1‑236 (MQ=255)
                                                                     ttttCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGGTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCcgc                                                                                                                                                                                                               <  2:410877/202‑1 (MQ=255)
                                                                        tCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGCGAAAGATAGTGCCAGGCTTCAGTTTc                                                                                                                                                                       >  1:656128/1‑239 (MQ=255)
                                                                            tATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCTGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCTCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAacc                                                                                                                                                                   >  1:53263/1‑239 (MQ=255)
                                                                            tATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGGGCAAGGAAAA‑TCTCCCCCCGCCTAATGCCACGAGAAAGAAAATGCAGGGCTTCAATTTCAacc                                                                                                                                                                   >  2:813217/1‑239 (MQ=255)
                                                                            tATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATgcg                                                                                                                                                                                                     >  1:269209/1‑205 (MQ=255)
                                                                                    atTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGGGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGccc                                                                                                                                                           <  1:623090/239‑1 (MQ=255)
                                                                                          ggCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCCGAGAAAGATAGAGCCAGGCTTAAGTTTCACCCACCACCCCCAccc                                                                                                                                                      >  2:964712/1‑237 (MQ=255)
                                                                                          ggCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGCTAGGGCCAGGCTTCAGTTTCAACCACCAGCCCCAccg                                                                                                                                                      >  1:973730/1‑238 (MQ=255)
                                                                                                          tCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGGGAAAGATCGTGCCAGGCTTAAGTTTACACCACCACCCCCACCCCCGGAAGGCAACggag                                                                                                                                      >  2:1071984/1‑236 (MQ=255)
                                                                                                          tCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGtt                                                                                                                                      >  1:165720/1‑238 (MQ=255)
                                                                                                          tCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGAGCCACGCTTCCGTTTCAACCACCAGCCCCACCGCCGGACGGCCCCgggt                                                                                                                                      >  1:433787/1‑236 (MQ=255)
                                                                                                          tCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAATGCCAGGCTTCAGTTTCAAACACCAGCCCACCCCCCGGAAGGcaccgggt                                                                                                                                      >  2:1267522/1‑231 (MQ=255)
                                                                                                           cGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCCCCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTcc                                                                                                                                    <  1:1042976/239‑1 (MQ=255)
                                                                                                                        tCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTCCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAACATACTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCCCCGGACGGCCACGGTTCCCCCCTTCTTTgct                                                                                                                       >  1:368339/1‑237 (MQ=255)
                                                                                                                         cAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCACTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGCCCACGGTTCCCCGcttcttcaatt                                                                                                                      >  1:663059/1‑234 (MQ=255)
                                                                                                                            tttttttttGGGGGTGGAAAAAAAACTGATCAATTGGGAAAATAATACGTTCCAGCAATGGCAAGTCACCTTTTAACGCCATTTCCTGCGACTCTTCCACCCCCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTcc                                                                                                                   <  2:586762/238‑1 (MQ=255)
                                                                                                                                tttCGGGGGGGGGATAAAAAACGGATCGATAGGGGAAATAATACGCTCCGGCAATGGCAAGTCATTTTTAAACGCCAGTTCCGGCGCTTCTTCCACCCCCGGTTTGCGGCCCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGct                                                                                                               <  2:23525/239‑1 (MQ=255)
                                                                                                                                  ttgggggggggATAAAAAACGTCTCGTATTGGGAAAAAATCCGAGCCTGAAATGGCAAGGCAGCTTTTAACCCCGCTTCCGGCGACTCCTCCCCCACCAGTTTGCTGCTCAGATC‑GGGCAGAGCAAGGAAAA‑CCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGctct                                                                                                             <  2:1052854/230‑1 (MQ=255)
                                                                                                                                      gtggCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGc                                                                                                          >  1:97727/1‑238 (MQ=255)
                                                                                                                                      gtggCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGc                                                                                                          >  1:324180/1‑238 (MQ=255)
                                                                                                                                      gtggCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGGGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGc                                                                                                          >  2:969924/1‑238 (MQ=255)
                                                                                                                                             atgaaaaaCTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTGAACGCCAGTTCCTGCGACTCTTCCCCCCCCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGgt                                                                                                   <  1:905707/235‑1 (MQ=255)
                                                                                                                                                 tgtttttaagagccggggAAATAACCCACTCCACCAAGGCCAGGTCATCTTTTAACGCCTTTCCCTGAGCCCCTCCCCCCACCAGTTTGCTGCTCAGATC‑GGGAAGAGCAAGGAAAT‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCTCCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCt                                                                                              <  2:339620/224‑1 (MQ=255)
                                                                                                                                                       gATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCCCTTCCCCCACGGGGGCTTcagcc                                                                                        >  2:441048/1‑235 (MQ=255)
                                                                                                                                                               tGGGAAATAATGCGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCATCTCACg                                                                                <  1:18758/239‑1 (MQ=255)
                                                                                                                                                                 ggAAATATTCCGTTCCCGCAATGGCAAGTCATCTTTTACCCCCAGTCCCGGCGACTCTCCCCCCCCCAGTTTGCTGCCAAGATC‑GGGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCCCCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCATCTCACGGa                                                                              <  2:1026046/239‑1 (MQ=255)
                                                                                                                                                                  gAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGCCGGCCACGGTTCCCCGCTTCTTTATTTTCCAACCCTTGCACCCGGGGGGCTTCGGGCaccccccggcc                                                                             >  2:829288/1‑229 (MQ=255)
                                                                                                                                                                  gAAAAAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCCCCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCATCTCACGGa                                                                              <  1:1267522/238‑1 (MQ=255)
                                                                                                                                                                         tccggtCCAGCAATGGCAAGTCATCTTTTAACCCCAGTTCCTGCGACTCTTCCACCCCCAGTTTGCGGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCATCTCACGGACAATTTTa                                                                      <  1:949332/234‑1 (MQ=255)
                                                                                                                                                                         taCGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGGGCATCTAACGGCCAATTTTa                                                                      >  1:235968/1‑239 (MQ=255)
                                                                                                                                                                            gATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCAtct                                                                                    >  1:339620/1‑222 (MQ=255)
                                                                                                                                                                              tCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGAATCTACCGGACAATTTTAGTGAt                                                                 >  1:1107183/1‑239 (MQ=255)
                                                                                                                                                                              tCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGATTCAGTTTCAACCACCAGCCCCACCGCCGGCAGGCCACGGTTCCCCGCTTCTTTGATTTTCAGCGCTTTCACACGGTGGGGTTCGGGCATCCCCAGGCCCATTTTaagaga                                                                 >  2:157118/1‑234 (MQ=255)
                                                                                                                                                                                 aGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCCCTTGCACCAGGTGTGCTTCGAGCATTCCACGGACAATTTTAATGaa                                                                 >  2:384679/1‑235 (MQ=255)
                                                                                                                                                                                   cAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCATCTCACGGCCAATTTTAGTGATACTg                                                             >  1:302218/1‑238 (MQ=255)
                                                                                                                                                                                     aTGGCACGTCATCTTTTAACCCCAGTTCCGGCCACTCTTCCACCCCCAGTTTGCTGCCCAGATC‑CCGCAGACCAAGGAAAA‑TCCCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCATCTCACGGACAATTTTAGTGATACTGGCa                                                          <  2:961402/239‑1 (MQ=255)
                                                                                                                                                                                        gCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGCCGGCCACGGTTCCCCGATTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGACCATCCCCCGGACAATTTAAggggtcatggcggga                                                       >  2:933199/1‑225 (MQ=255)
                                                                                                                                                                                        gCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAACCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTCCACCAGGTGGGCTTCTCGCCTCCCACGGCCAATTTTAGGGGAACTGGCAgag                                                       >  2:1079334/1‑237 (MQ=255)
                                                                                                                                                                                        gCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACAACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGAt                                                                                                                       >  1:511901/1‑175 (MQ=255)
                                                                                                                                                                                         cAATTCCTCTTTTAACGCCAGTTCCTGCGACTCTCCCCCCACCAGTTTGCTGCTCAGAAC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCATCTCACGGACAATTTTAGTGATACTGGCAGGa                                                       <  1:56385/238‑1 (MQ=255)
                                                                                                                                                                                             tCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGgt                                                                                                   >  1:1022228/1‑190 (MQ=255)
                                                                                                                                                                                                  ttttAACGCCAGTCCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCATCTCACGGACAATTTTAGTGATACTGGCAGGAGCCAGTTgcg                                             <  1:1071984/239‑1 (MQ=255)
                                                                                                                                                                                                       aCGCCGTTTCCTGCGCCCCTCCCCCCACCAGTTTGGTGGCCAGATC‑GCGAAGAGCAAGGAAAT‑GCCCCCCGCGACTAAGCGGCAGAGAAAGAGAGTGCCAGGCTTGAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCATCTCACGGACAATTTTAGTGATACTGGCAGGAGCCAGTTGCGCCAGa                                        <  2:165720/239‑1 (MQ=255)
                                                                                                                                                                                                              ttCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCATCTCACGGACAATTTTAGTGATACTGGCAGGAGCCAGTTGCGCCAGACGGGaaa                                 >  1:1066471/1‑239 (MQ=255)
                                                                                                                                                                                                              ttCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCATCTCACGGACAATTTTAGGGATACTGGCAGGAGCCAGTTGCGCCAGACGGGaaa                                 >  1:232147/1‑239 (MQ=255)
                                                                                                                                                                                                              ttCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGGGCTTCGAGCATCTCACGGCCAATTTTAGTGATCCTGGCAGGGGCCAGTTTGGCCCGACGGGaaa                                 >  2:776997/1‑239 (MQ=255)
                                                                                                                                                                                                                 ctggaaccttcccccccccaGTTTGCTGCACAGACT‑GAGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCATCTCACGGACAATTTTAGTGATACTGGCAGGAGCCAGTTGCGCCAGACGGGAAAGAt                              <  1:828885/222‑1 (MQ=255)
                                                                                                                                                                                                                   gcgcCTCTTCCCACCCCAGTTTGCTTCTCGAACC‑CGGCAGAGCAAGGAAAA‑TCCCCCCGCGACTAAGGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCATCTCACGGACAATTTTAGTGATACTGGCAGGAGCCAGTTGCGCCAGACGGGAAAGATCg                            <  2:147027/239‑1 (MQ=255)
                                                                                                                                                                                                                        tctTCCACCCCCAGTGTGCTTCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAAGGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCATCTCACGGACAATTTTAGTGATACTGGCAGGAGCCAGTTGCGCCAGACGGGAAAGATCGATAcg                       <  1:1103548/239‑1 (MQ=255)
                                                                                                                                                                                                                        cctTCCCCCCCCAGTTTG‑TGGGCAGAACAGCGCGGAAAAAGGAAAC‑TCCCCCCGCGCCTAAGGCGCAGGGAAAGATAGGGCCAGGCTTCAGTTTCAACCACCAGCCCCCCCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCATCTCACGGACAATTTTAGTGATACTGGCAGGAGCCAGTTGCGCCAGACGGGAAAGATCGATAcg                       <  2:367861/238‑1 (MQ=255)
                                                                                                                                                                                                                             ccccgccaGTTTGCTGCCCAAGAC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCATTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCATCTCACGGACAATTTTAGTGATACTGGCAGGAGCCAGTTGCGCCAGACGGGAAAGATCGATACGCgaga                  <  1:434422/234‑1 (MQ=255)
                                                                                                                                                                                                                                  ccaGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTcc                                                                                                                   <  2:438591/137‑1 (MQ=255)
                                                                                                                                                                                                                                  ccaGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTcc                                                                                                                   >  1:438591/1‑137 (MQ=255)
                                                                                                                                                                                                                                    aGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCATCTCACGGACAATTTTAGTGATACTGGCAGGAGCCCGTTGCCCCAGACGGGGAAGATGGAACAGCGAGCCTGGAcc           >  2:1181029/1‑239 (MQ=255)
                                                                                                                                                                                                                                      tttGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCATCTCACGGACAATTTTAGTGATACTGGCAGGAGCCAATTTCGCCCGAGGGGGAAGaccagaaaccagacctggaacaa         >  2:1000823/1‑217 (MQ=255)
                                                                                                                                                                                                                                      tttGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACAAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCATCTCACGGACAATTTTAGTGATACTGGCAGGAGCCAGTTGCGCCAGACGGGAAAGATCGATACGCGAGACTGGACCaa         >  1:709939/1‑239 (MQ=255)
                                                                                                                                                                                                                                       ttGCTGCTAAGATC‑GCGCAGAGCAAGGAAAA‑TCCCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCATCTCACGGACAATTTTAGTGATACTGGCAGGAGCCAGTTGCGCCAGACGGGAAAGATCGATACGCGAGACTGGACCa          <  1:776997/237‑1 (MQ=255)
                                                                                                                                                                                                                                       ttGCGGCTCAGGTC‑GCGGAGAGCAAGGAAAA‑GCCCCCCGAGACTAATGCGAAGAGAAAGATAGGGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCATCTCACGGACAATTTTAGTGATACTGGCAGGAGCCGGTTGCGCCAGACGGGAAAGATCGATACGCGAGACTGGAcc           <  1:989939/236‑1 (MQ=255)
                                                                                                                                                                                                                                       ttGCCGCCCAAATC‑GCGCAGCG‑AAGGAAAACTCCCCCCGCCACTAATGCCCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCCCCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCATCTCACGGACAATTTTAGTGATACTGGCAGGAGCCAGTTGCGCCAGACGGGAAAGATCGATACGCGAGACTGGACCAAg        <  2:97727/239‑1 (MQ=255)
                                                                                                                                                                                                                                             ctCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCATCTCACGGACAATTTTAGTGATACTGGCAGGAGCCAGGTGGGCCAAACGGGAAAGATCGGTAAGCCAGACTGGACCAAGGTGgtc  >  1:1055483/1‑239 (MQ=255)
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                               
GCTCCAGCGCCTCGCCGAGCGGCATCTC‑TTTTACATCCTCGTAGAACGGCATGCGATGTACAATACCATTTTCCGTATCAATAATTCCCGGCAAGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATAATACGATCCAGCAATGGCAAGTCATCTTTTAACGCCAGTTCCTGCGACTCTTCCACCACCAGTTTGCTGCTCAGATC‑GCGCAGAGCAAGGAAAA‑TCTCCCCGCGACTAATGCGCAGAGAAAGATAGTGCCAGGCTTCAGTTTCAACCACCAGCCCCACCGCCGGACGGCCACGGTTCCCCGCTTCTTTGATTTCCAGCTCTTGCACCAGGTGTGCTTCGAGCATCTCACGGACAATTTTAGTGATACTGGCAGGAGCCAGTTGCGCCAGACGGGAAAGATCGATACGCGAGACTGGACCAAGCTGATC  >  NC_000913/1668015‑1668489

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A