Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F27 I0 R1
|
322 |
127.1 |
2757226 |
91.8% |
2531133 |
223.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,706,790 |
C→A |
10.7% |
T148K (ACG→AAG) |
rsxB → |
SoxR iron‑sulfur cluster reduction factor component, putative iron‑sulfur protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,706,790 | 0 | C | A | 10.7%
| 178.5
/ 15.5
| 67 | T148K (ACG→AAG) | rsxB | SoxR iron‑sulfur cluster reduction factor component, putative iron‑sulfur protein |
| Reads supporting (aligned to +/- strand): ref base C (22/38); new base A (4/3); total (26/41) |
| Fisher's exact test for biased strand distribution p-value = 4.17e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.48e-01 |
AAAATCAACCGTTGCGCCCCAGGTGGCGAAGCTGTGATG‑CTAAAAATTGCCGAGTTGCTTAATGTCGAGCCGCAGCCGCTGGATGGCGAAGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCA > NC_000913/1706555‑1707025
|
aaaaCCACCCGTTGCGCCCAAGGGGGGGAAGGTGGGATG‑TTAAAAATGCCCGAGTTGGTTAAGGGCGGGCCGCAGCCGCTGGATGGCGAAGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACggg < 2:1003536/239‑1 (MQ=255)
tCACCCGTTGCCCCCCAGGTGGCGAAGCTGTGATG‑CTAAAAATTGCCGAGTTGCTTAATGTCGAGCCGCAGCCGCTGGATGGCGAAGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGc < 1:994761/239‑1 (MQ=255)
ccccccGTTTCCCCCCGGGTGGGGAAGCT‑TGGTGTGTAAAAATTGCCGGGTTGCTTAATGTGGAGCCGCCGCCGCTGGATGGCGAAGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGc < 2:724693/235‑1 (MQ=255)
aattttgtataagaggcagTGGGGAAGCTTGGATT‑GTAAAAATTGCCGATTTGCTTAATGTCGAGCCGCAGCCGCTGGATGGCGAAGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGc < 2:1113314/221‑1 (MQ=255)
cgtgtcgcCCCAGGTGGCGAAGCTGTGATG‑CTAAAAATGTCCGAGTTGCTTAATGTCGAGCCGCAGCCGCTGGATGGCGAAGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAAttt < 1:1313446/234‑1 (MQ=255)
gcCCCAGGTGGCGAAGCTGTGATG‑CTAAAAATTGCCGAGTTGCTTAATGTCGAGCCGCAGCCGCTGGATGGCGAAGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATgtgt < 1:381476/239‑1 (MQ=255)
tGGCGAAGCTGTGATG‑CTAAAAATTGCCGAGTTGCTTAATGTCGAGCCGCAGCCGCTGGATGGCGAAGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATcc < 1:1172238/237‑1 (MQ=255)
tgATG‑CTAAAAATTGCCGAGTTGCTTAATGTCGAGCCGCAGCCGCTGGATGGCGAAGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTTGCGCTACCCGTGCCATGCCTACGGTAATGAGGGGTCTCTGTACGGGCTGCAATTTTTttgtctgtctctttttaccatc > 1:1113314/1‑220 (MQ=255)
g‑CTAAAAATTGCCGAGTTGCTTAATGGCGAGCCGCAGCCGCTGGATGGCGAAGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAAt < 1:492845/208‑1 (MQ=255)
cggtgtGCTTATGGGCGGGCCGGAGCCGGTGGGTGGGGAGGCGGAAGGGATAACGCCTGCGGGGATGGGGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAAc < 2:117544/234‑1 (MQ=255)
aggCTTAATGGCGGGCCGCAGCCGCTGGATGGCGAAGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGt < 1:1199852/237‑1 (MQ=255)
tttAAGGTCGGGCCGCAGCCGCTGGATGGGGAAGGGCAAGGGAAAACGCCGGGGGGGATGGGGGCGGTTATTGAAGAAAATAACTGTATTGGCTGCAATAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGc < 2:1053139/238‑1 (MQ=255)
agccgcagccgcTGGATGGCGAAGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGGATTCAGGCGTGTCCGGGAGACCCCATCGGTGGCGCTCCCCATGCCATTCATACGGTAAATGGGGATCTCTTTCCGGGCTGCAATTTATGTGTTTGTCACTGCCAGACCACCCGAATCTCGTTGCAACCGGGCGCAAAAaca > 2:1199852/1‑236 (MQ=255)
gccgcagacgcTGGATGGCGAAGCGAAAGAGATAACGGCTGCGCGGATGGTGGTGGTTATTGATGAAAATAACTGTTTTGGCTGCAATAAATGTAGTCCGGCGTGTCCGGTAGACGCCCTCGTTGGCGATACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTAAGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAATCACCt < 2:400386/238‑1 (MQ=255)
cgcTGGATGGCGAAACGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAAGGTATTCAGGCGGGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTcc < 2:1297133/236‑1 (MQ=255)
gATGGGGAATCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAAt < 2:929960/238‑1 (MQ=255)
aGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTg < 1:894092/238‑1 (MQ=255)
cgcAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGGAATGAGTGATCTCTTTACGGGCTGCCATTTATTGGTTGTTCCTGTCCCCACGCACTCAATCTCGTTGCAACCGGGCGCCGAAACACCTGACCCCCGGAAATGGGactggcaa > 2:893394/1‑232 (MQ=255)
gcAAGAGATAACGCCTGGGGGGTTGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTAGTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTTCCATGCATACGGTAATGAGTGATCTCTGTAAGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGaa < 1:627525/237‑1 (MQ=255)
tAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTcc < 1:246943/238‑1 (MQ=255)
ccccTGCGCGGTTTGTTGGTTTTTTTGTTGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTTCCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTg < 2:584606/237‑1 (MQ=255)
gtgtgtgtggtggCGGTTTTTGATGAAAATAAGTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTGGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTAt < 2:44873/232‑1 (MQ=255)
tgggttttttGATGAAAATAACTTTTTTGGCTGGCCTAAATGTTTTGAGGCGTGTTCGGTAGACGCCCTCGGTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTg < 2:745665/230‑1 (MQ=255)
ttttttagtaaaagtaCTGTTTTGGCTGCCCTAAATGTATTCAGGCGTGTCCGGTAGGCGCCATGGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAaca < 2:856228/223‑1 (MQ=255)
ttactggttaaaaTGACTGTCATGGCCGCACTAAATTTATTCAGGCGTGTCCGGTAAGCGCCATCGGTGGCGCTACCCGTGGCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAaca < 1:270953/229‑1 (MQ=255)
ttttGATGAAAATAACTGTGTTGGCTGCACTAAATGGATTCAGGGGTGTCCGGTTGACGCCATCGGTGGCGCTACCCGTGCCATTGATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACAcc < 2:461951/237‑1 (MQ=255)
tgatgaAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTccc > 1:1005842/1‑226 (MQ=255)
tgatgaAAAAAACTGTATTGGCTGCCCTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTccc < 2:1005842/226‑1 (MQ=255)
tatgaAAATTATTGTTTTTGTTGGCCTAAATGTATCCCGGTGGTGCCGGTAGGCGCCATCGTTGGCCGTACCCTTGCCATGCATACGGTAATGAGGTATCTCTGGACGGGCTTCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑ttc < 2:405185/238‑3 (MQ=255)
gaAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGAACCCTGGAAATGGGATCTGAACACCATTCCCGGGCGGTACATTCCCGTGGAacacacagctta > 2:865718/1‑231 (MQ=255)
cTGTACTGGCTTCCCTCAATGTATTCAGGGTTGTCCGGTAGACGCCATCGTTGGCGCTATCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCGCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAGATGGGATCTGAACACCATTCCCGTCCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATtc < 1:497421/239‑1 (MQ=255)
ttGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGc > 2:947143/1‑239 (MQ=255)
gCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGCCTCCTGGCAATTGGATCTGAACACCATTCCCGTGCGGATCATTCCCGTGGCACCACA‑TGCTTAATTTTTTTACAGCAtt > 2:123356/1‑239 (MQ=255)
tGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCTTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAAAACCCTTCCCGTGCGTTCCATTCCCCGGGAACACCA‑TCCTTAAATTATTTCCTGCCTTcc > 2:570517/1‑238 (MQ=255)
aCTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTc > 2:288992/1‑184 (MQ=255)
aCTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTc < 1:288992/184‑1 (MQ=255)
aCTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTAGCATTCCCGTGGAACACCA‑TTCTTAAGTTATTCTCTGCATTCAGaa > 1:784338/1‑239 (MQ=255)
aCTAAAAGTTTTCAGGCCTGGCCGGTAGACGCCATCGTTTGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGa < 1:1305046/238‑1 (MQ=255)
aTGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGCACATGGATTCTGAACACCATTCCCGAGCGTATCTTTCCCGTGGAACACAC‑ACCTTAAGTTATTTTCTCCTTTCaaaaaaaaa > 2:1128855/1‑238 (MQ=255)
cAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGACCACCATTCCCGGGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTATGAATTCCGAAaaaataaaa > 2:986705/1‑236 (MQ=255)
cAGGCGTGGTCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCCTACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACCCCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCt < 1:49687/239‑1 (MQ=255)
tgtCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTAAGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGAtt > 1:123922/1‑239 (MQ=255)
tgtCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCGGTAAGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTCCATCTCGTTGCAACCGGTCGCAGAACCACCTGACTCCTGGAACTGGGATCTGACCCCCATTCCCGTGCGTATCTTTCCCGTGGAACACAC‑TCCCTAAGTCATACTCTGCATTCAGAaaaaaaaaaaaaggggat > 2:608956/1‑230 (MQ=255)
tCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGAACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAAAACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGCTTTc > 1:486360/1‑239 (MQ=255)
tAGACGACATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTGGCAGAAACACCTGACTCCTGAAACTGGGAACTGAAAACCATTCCCGTGCGTATCATTCCCGTGGAAAACCA‑TGCTTAAGTTATTCTTTGCATTACGAAAAAATAAAATCAGGGATTTAAAcgg > 2:677456/1‑239 (MQ=255)
cGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAAcggcgg < 1:865718/238‑1 (MQ=255)
cGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTAAGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACggcggc > 1:1208202/1‑239 (MQ=255)
gCCGTCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAAATTAGGTGTTGAACCGTGCCCAACGCACTGCATCGCGTTGCAACCGCTAGCAGAAACACCTCACTCCTGGAATGGGGTTCTGAACACACTTCCCGTGCCAATCATTACCGTGAAAAACCC‑ACTTTAAGTTATTCTCTGCCGTCGGAAAAAAAAAAATCtagaagttaaactcgggca > 2:1246586/1‑221 (MQ=255)
gCCATCGTTGGAGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGGGCCCGACGCACGGCATCTCGTTGCAACCGGTCGAAGAAACACCTGACTCCTGGAAATGGGAACTGGACACCATTACCTTGCGTGTCCTTCCCGTGGAA‑ACCACTGCTTGAGTTATTATCTGCATTCAGAAAAAATAACATCTGGGATTTCacaggaggc > 2:1028373/1‑230 (MQ=255)
tGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCAtccatcca < 1:947143/239‑1 (MQ=255)
ggCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCAc < 1:662064/239‑1 (MQ=255)
ctccaccggtcccttcATACGGGAATTGGTGATTTCTGGAAGGGCCTCAATTTATGGGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCg < 2:1208202/223‑1 (MQ=255)
ccGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAATCGCCTGGCTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCAATCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATg < 1:422077/239‑1 (MQ=255)
aTGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAAcc < 1:123356/238‑1 (MQ=255)
atttgtgaaTGAGGTATCCCTGTACGGGCTGCAATTTATGTGTTGACCCGTGCCCGACGCACTGAATTTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTCTTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAg < 1:1246586/230‑1 (MQ=255)
aCGGTAATGAGTGAGCTCTGTACGGGCTGCAATTTATGTGTTCATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACCCCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCa < 1:1028373/239‑1 (MQ=255)
cGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCaa < 1:570517/239‑1 (MQ=255)
cGGTAATGAGTGATCTCTGGACGGGCTTCAATTTAAGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCaa < 1:1128855/239‑1 (MQ=255)
cGGTAATGAGGGATCTCTGTACGGGCTTCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCaa < 1:986705/239‑1 (MQ=255)
tGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAAcggc > 1:845455/1‑198 (MQ=255)
tGAGGGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAAcggc < 2:845455/198‑1 (MQ=255)
tGAATGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATGCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAACAAATAAAATCTGGGATTTCAACGGCGGACTCCCTCCACCGGAGATGAAAACCCAGGCCAACggga > 1:842833/1‑236 (MQ=255)
aGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGTAGATGAAAACCAAGTCCAACGGTaca > 1:605377/1‑238 (MQ=255)
tctcTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATTTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGCATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAATTAAACTATGGGATTCCAACAAGGGCACCCTCACCCCGGGGATTAAAACCCAACCCAAAggacaaccccc > 2:1155189/1‑229 (MQ=255)
tGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGGACACCCCTgccc > 1:260953/1‑236 (MQ=255)
tGTAAGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAACATAAAATCTGGGATTTCAAAGGGGGCATTCATCAACCGGAAATGAAAACCCAGTCCAAAGGGAAACCCCTgggcg > 2:1363051/1‑238 (MQ=255)
gTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTAAACGGCGGCATCCATCCACCGGAAGTGAAAACCCAATCCAACGGAACAACCCTGCCCCa > 2:197785/1‑239 (MQ=255)
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AAAATCAACCGTTGCGCCCCAGGTGGCGAAGCTGTGATG‑CTAAAAATTGCCGAGTTGCTTAATGTCGAGCCGCAGCCGCTGGATGGCGAAGCGCAAGAGATAACGCCTGCGCGGATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCA‑TGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCA > NC_000913/1706555‑1707025
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
