Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F27 I0 R1
|
322 |
127.1 |
2757226 |
91.8% |
2531133 |
223.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,509,356 |
A→T |
13.6% |
Y152* (TAT→TAA) |
yhfW ← |
phosphopentomutase‑related metalloenzyme superfamily protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,509,356 | 0 | A | T | 13.6%
| 144.9
/ 2.6
| 66 | Y152* (TAT→TAA) | yhfW | phosphopentomutase‑related metalloenzyme superfamily protein |
| Reads supporting (aligned to +/- strand): ref base A (13/43); new base T (8/2); total (21/45) |
| Fisher's exact test for biased strand distribution p-value = 1.02e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TCGACGCCATAG‑CCCATATGCACGACCTGGAAACCGTTGTCATAAGCGCCAGAACGCGGCGCATTGATACCAATAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GACCTGGCCTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCGGAAACTAATGCCTGCTCAACACGGTCAATCACATCGCGAAAAGGCATCCGCAGCGGCGGTAACGGGCGCGTGCCTAAAATTTCCTGATGCCCCATAAAGGTATCGCCACCTTCATGTTGCAGCTCTGCC > NC_000913/3509120‑3509590
|
tCGACGCCATAG‑CCCATATGCACGACCTGGAAACCTTTGTCATAAGCGCCAGAACGCGGCGCATTGATACCAATAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGCCCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTtata < 2:923893/239‑1 (MQ=255)
aCGCCATAG‑CCCATATGCACGACCTGGAAACCGTTGTCATAAGCGCCAGAACGCGGCGCATTGATACCAATAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGCCAAAAGAGAT‑ACCAGAGA‑GA‑TTGGC‑GGCAAA‑GTtttaaa > 1:1059723/1‑236 (MQ=255)
cggcATCG‑CCCATAGGCCCGACATGGAAACCGTTGTCATAAGCGCCAGAACGCGGCGCAGTTATACCAATAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCAACAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GAcc < 2:785305/236‑1 (MQ=255)
cGCCATAGCCCCATATGCACGACCTGGAAACCGTTGTCATAAGCGCCAGAACGCGGCGCATTGATACCAATAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GAc < 1:735186/239‑1 (MQ=255)
cGCCATAG‑CCCATATGCACGACCTGGAAACCGTTGTCATAAGCGCCAGAACGCGGCGCATTGATACCAATAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGGGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GAc < 1:1112932/238‑1 (MQ=255)
cGCCATAG‑CCCATACGCACGACCTGGAAACCGTTGTCATAAGCGCCAGAACGCGGCGCATTGATACCAATAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GAcc < 1:292195/239‑1 (MQ=255)
gCCATAG‑CCCATATGCACGACCTGGAAACCGTTGTCATAAGCGCCAGAACGCGGCGCATTGATTCCAATAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GAcc < 1:1326586/238‑1 (MQ=255)
ccATAG‑CCCATATGCACGGCCTGGAAACCGTTGTCATAAGCGCCAGAACGCGGCGCATTGATACCAATAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GACCt < 1:488714/238‑1 (MQ=255)
cATATGCCCGACCTGGAAACCGTTGTCATAAGCGCCAGAACGCGGCGTATTGATACCAATAAAGCGCTCTTTTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GACCTGGCCTAAAt < 1:624526/239‑1 (MQ=255)
atGCACGACCTGGAAACCGTTGTCATAAGCGCCAGAACGCGGCGCATTGATACCAATAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTCAT‑GTTTTA‑AACCTGGCCCAAATc‑c > 1:95738/1‑238 (MQ=255)
atGCACGACCTGGAAACCGTTGTCATAAGCGCCAGAACGCGGCGCATTGATACCAATAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGCCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAA‑GTTATA‑AACCTGGCCTtaaaac > 1:747958/1‑235 (MQ=255)
gcaggccTGGAAACCGTTGTCATTAGCGCCAGAACGCGGCGCATTGATACCAATAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GACCTGGCCTAAATC‑CGc < 1:997564/232‑1 (MQ=255)
cGACCTGGAAACCGTTGTCATAAGCGCCAGAACGCGGCGCATTGATACCAATAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGCCCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTGGTCAAAAGAGAT‑AACAAGAA‑GA‑TTGGC‑GGGAATAGTTAAG‑AACCTGG‑CTACAAC‑CGCCTC‑g > 1:1340792/1‑239 (MQ=255)
cGACCTGGAAACCGTTGTCATAAGCGCCAGAACGCGGCGCATTGATACCAATAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAACGGGAT‑CACAGAGA‑GA‑TTGGCGGGTAAT‑TTTTTA‑GCCTTGGctcaatcccccctc > 1:719173/1‑226 (MQ=255)
cGACCTGGAAACCGTTGTCATAAGCGCCAGAACGCGGCGCATTGATACCAATAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGCCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGCC‑GGGAAA‑GTTTTA‑AACCTGGCCCaaaaaccccccc > 2:26989/1‑230 (MQ=255)
ccTGGAAACCGTTGTCATAAGCGCCAGAACGCGGCGCATTGATACCAATAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATATAACCTGCCCTAAACC‑CCCCCC‑gag > 1:27621/1‑239 (MQ=255)
ggAAACCGTTGTCATAACCGCCAGAACGCGGCGCATTGATACCAATAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGCCGTCAAAAGAGAT‑CACAGAGG‑GA‑TTGCC‑GGCAAT‑GTTTTT‑GACCTGGCCCAAATC‑CACCTC‑CGGAttg > 1:938431/1‑238 (MQ=255)
gTTGTCATAAGCGCCAGAACGCGGCGCATTGATACCAATAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCCCCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CCCCGAGA‑GA‑TTGGC‑GGGAAT‑TTTTTT‑AACCCGGCCTaaaaaccccccggagttatctttc > 2:997564/1‑217 (MQ=255)
ttGTCATAAGCGCCAGAACGCGGCGCATTGATACCAATAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTTTT‑GACCCGGCCTAAATC‑CCCCTC‑CAGATTATAGccca > 1:962774/1‑236 (MQ=255)
tCATAAGCTCCAGAACGCGGCGCATTGATACCAATAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCCCGATCCGCCCAATTTTGATTGCGTCGCCAAAACAGAC‑AACAGA‑A‑GACTTGGCGGGAAAT‑GTTATA‑GACCAGCCTTAAATA‑CCCCCG‑AAGTTAATCGCCaacac > 2:714125/1‑236 (MQ=255)
aaGCCCCAAAACGCGGCGCTTTGATACCAAAAACGCCCCCTTTTTTGTTTTCGGGCGATTCGAGAATGCGTTGACTGTCTGTTAACAGGCCCCCAAA‑GGTAATTGCCCGCCCGACCTGTCCCTGCTCACGCACGATACGACCATTTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GACCTGGCCTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAAcc < 2:1059723/239‑1 (MQ=255)
aGCGCCAGAACGCGGCGCATTGATCCCAATAAAGCCCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GACCTGGCCTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAACCg < 1:1371090/239‑1 (MQ=255)
aGCGCCAGAACGCGGCGCATTGATACCAATAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GC‑TTGGC‑GGTAAT‑GGTATA‑AACCCGGCCTAAATC‑CGCCTC‑GGGGTTTTTGCCAATACCAAcc > 1:62935/1‑238 (MQ=255)
attttttccaaaaaaaGCGTCTTTCTTTGTTTTCGGGGCCATCGAGAATGGGTTGCCTGTGGGTTAACAGCCCACAAAA‑TGTAATGCCCCGCCCGCCCTGTCCCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CCAAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GCCCTGGCCTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGa < 2:1120683/226‑1 (MQ=255)
aTTGATCCCAATAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GACCTGGCCTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGa < 1:1066813/238‑1 (MQ=255)
tACCAATAAAGCGCCCTTCTTTGCTTTCGGCGGCAACGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGCCCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GACCTGGCCTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGc < 1:288869/239‑1 (MQ=255)
aTAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGCGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑TTTATT‑AGCCTGGTCTAAAAC‑ACCCTC‑CGGATTATTGCCCCAACCAACACCCTGATTGACCCACCGAAATTGcccagc > 1:961383/1‑234 (MQ=255)
aTAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GACCTGGCCTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAAACGCCCGATTTACCCCCAGaaaattcacata > 1:519867/1‑230 (MQ=255)
aTAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAA‑GTTATA‑AACCCGGCCTAAATC‑CCCCTC‑GAGATTATCGCCAATACGAACCGCCTGATTTGCCCCCAGCAAATACAGatc > 1:399270/1‑239 (MQ=255)
gcCCTTTTTTGCTTTCTGGGGCATCGGGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GACCTGGCCTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCa < 1:380101/239‑1 (MQ=255)
cccTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTTTA‑GACCTGGCCTAAAAT‑CGCCCC‑GAGATTATCGGCCATCGCAACCCCCCGATTTACCCCCAGAAAATGCAGATCATccccc > 1:478276/1‑237 (MQ=255)
cccTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑AAACTGGCCTAAATC‑CGCCTC‑GAGATTATCTCCAATTCCAACCGCCCGGTTGAACCACAACAAATTCAGAACATCAcccc > 1:643109/1‑237 (MQ=255)
tGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCGGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GACCTGGCCTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTcc < 1:608520/239‑1 (MQ=255)
cGAGAATGCGTTGCCTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGCCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑TACCTGGCCTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCg < 1:276811/239‑1 (MQ=255)
gggaattttttgctggTCGTTTAACAGGCCACAAAA‑TGTAAGGCCCCGACAGACCTGTCCCTGCCACCGCACGAATCGACCAATTTTGATTGGGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAA‑GTTATA‑GACCTGGCCTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCgg < 2:399270/224‑1 (MQ=255)
gggaACGCGTTGACTGTCTGTTAACCGGCCACCAAA‑GTAAATGCCCCAACCGCCCTTGACCGGCCCACCCACGATAGTGCCAATTTTGATTGCTGCGT‑AAAAAAGATCCACAGAAA‑GA‑TTGGC‑GGTAAG‑GTTAAA‑GCCTGGGCCAAAACC‑CGCCTC‑GAGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCgg < 2:185914/237‑1 (MQ=255)
gaaaaTGGGTTGACTGGCGGTTAACAGGCCCACAAA‑TGTAAGGCCCCGACCGCCCTGTCCCTGCTCACGCACGATACGCCCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GACCTGGCCTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCgg < 1:26989/236‑1 (MQ=255)
ttttgttggtggTTAAACGGCCCCCAAA‑TTAAATGACCCGACCGACCTGTCCCTGCTCCCGCACGATACGACCAATTTTGATTGGGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GACCTGGCCTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAATCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCGGAAACTAAt < 2:519867/229‑1 (MQ=255)
tttGCCTTTCGTTTAACCGGCCACAAAA‑TGTAATGCCCCGACCGACCGGTACCTGCCCCCGGACGGTACCACCAATTTTATCTGGTTCGTAAAAAAGAAT‑CACAGGGA‑GA‑TTGGC‑GGTAAT‑GTTAAA‑GCCCTGGCCTAAACC‑CGCCTC‑GAGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCGGAAACTAAt < 2:18979/238‑1 (MQ=255)
cTGCCGGTTACAAGGCCCACAAA‑TTTAAGGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GACCTGGCCTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCGGAAACTAATGCCTg < 1:1254648/239‑1 (MQ=255)
ttacagtgCCACAAAT‑TGTAAGGCCCCGACCGCCCTTTCCCTCCCCACCCCAGGTAAGACCATTTTTGTTGGGCTCCGC‑AAAGAGAA‑CACAGGGAGGA‑TGGGC‑GGTAAT‑GTTAAA‑GACCTGGCCTAAATC‑CGCCTC‑GGGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCGGAAACTAATGCCTGCTCAaca < 2:95738/232‑1 (MQ=255)
tAACAGGCCAACAAA‑TGTAATGCCCCCACCGGCCTGTACCTGCTCACGCACGATACGACCAATTTGGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GACCTGGCCTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCGGAAACTAATGCCTGCTCAaca < 1:802237/238‑1 (MQ=255)
taaaagCCCCCAAATTGTATTGCCCCGACCGACCGGTACCTGCTCACGCAGGATACGCCCAATTTGGTTTGCGTCGTAAAAAGAGAC‑CCCAGAGG‑GA‑TTGGC‑GGTAAT‑GTTATA‑GCCCGGGCCTAAACC‑CGCCTC‑GAGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCGGAAACTAATGCCTGCTCAaca < 2:340445/233‑1 (MQ=255)
acccggCCCCAAAA‑TTAAATGCCCCAGCCGACCTTTACCTGCTCACGCAGGAAACGACCAATTTGGTTGGCGTCGTCAAAAGAGAC‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GCCCTGGCCTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCGGAAACTAATGCCTGCTCAACACg < 2:914065/235‑1 (MQ=255)
tAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GACCTGGCCTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGat < 1:15791/168‑1 (MQ=255)
ccgaccgaCCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTCAT‑GTTTTA‑GAACTGGCCTAAAAC‑CGCCTC‑GCGATTATCGCCAAACGCACACCCCCGCTTGACCCCCAGCAAATTCAGACAATCCCCACCGCGGCCCCCCCTCCCACCCCCCGACAAC‑AAAGCCTGCTCAAAACGCTCCACCACACCCCCaaaaacaa > 2:102648/1‑235 (MQ=255)
accgaccTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GACCTGGCCTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAAACCCCCGATTGACCCCCAGAAATTGCAGATCATCGCCACGGC‑GCCCCCCCTGCCACCCACCGGGAACTAATTCCTGCTCAACACGGGCAATCCCATCCCGCAAAAGCaac > 1:379459/1‑236 (MQ=255)
ccTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GACCTGGCCTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAACCGCCTGa < 1:306837/131‑1 (MQ=255)
ccTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑AACCTGGCCTAAATC‑CTCCCC‑GAGATTTACGCCAATTCCAACCCCCTCATTTGCCCCCAGCAATTGCAGATCCACCCCACGGC‑GCCCCCCCCTCCCGCCCACCGGAACTAATGCCTCCTCAAAACCGCCAATAACACCGCGAAAAgaaaaaccccac > 2:57931/1‑228 (MQ=255)
cTGTACCTGCTCACAGACGATACGACCAATTTTGATTGCGTCGTAAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTAGA‑GCCCTGGCCTAAATC‑CGCCGC‑GAGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCGGAAACTAATGCCTGCTCAACACGGTCAATCACATCGCGAAAAGGCATCCGCAgcg < 1:539191/239‑1 (MQ=255)
cTGTACCTGCCCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GACCTGGCCTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCGGAAACTAATGCCTGCTCAACACGGTCAATCACATCGCGAAAAGGCATCCGCAgcg < 1:812935/239‑1 (MQ=255)
ctccccccccacgATTCGCCAATTTTTGATTGCGTCGACAAAAGAGAT‑CACGGAAA‑GA‑TTGGC‑GGTAAT‑GTTATA‑CACCTGGCTTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCGGAAACTAATGCCTGCTCAACACGGTCAATCACATCGCGAAAAGGCATCCGCAGCGGCGGTa < 2:643109/230‑1 (MQ=255)
cgcacgATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GACCTGGCCTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAACCCCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCGGAAACTAAAGCCTTCTCAAAACGGTCAATCACATCGCGAAAAGGCATCCCCAGCGGCGGTAACCGgc > 1:32534/1‑238 (MQ=255)
aCCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GACCTGGCCTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAACCGCCCGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCACCCAGCGGAAACTAATGCCTGCTCAACACGGTCAATCACATCCCGAAAAAGCACCCGCACCGGCGGGAACGGgggccggccccaaa > 1:472965/1‑229 (MQ=255)
aaatttttttttgtgcgtcAAAAGAGGC‑CAAAGAAA‑GA‑TTTGG‑GGTAAC‑TTTAAA‑CACCGGGCCGAAATCGCGCC‑C‑GAATTTAACCCCCACCGCAGCCGCCTGATTGCCCCACAGAAATTGCAGACCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCGGAAACTAATGCCTGCGCAACACGGTCAATCACATCGCGAAAAGGCATCCGCAGCGGCGGTAACGGGCGCGTGCCTAAAAtt < 2:779559/224‑1 (MQ=255)
tttGGGTCGACAAAAGAGAC‑CACAGAGA‑GG‑TTGGC‑GGAAAT‑GTTTGA‑CCGCCGTCCATAACC‑CGCCTCGGAGA‑TATCGCCAATCGCAACCGCCGGATTGACCCACAGAAATTGCAGAACATCGCACCGGC‑GCTCCACCTGCCAGCCAGCGGAAACTAATGCCGGCTCAACACGGTCAATCACATCGCGAAAAGGCATCCGCAGCGGCGGTAACGGGCGCGTGCCTAAAATGTCCTGATg < 2:780649/238‑1 (MQ=255)
atgtgctcctcAAAAGGAAC‑CACAGAGA‑GA‑TTGGG‑GGAAAT‑GTTATA‑GACCTGGCCTAAATC‑CGCCTC‑GAGATTACCGCAAATCGCAACCGCCTGATTGACCCACAGAAAGTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCGGAAACTAATGCCTGCTCAACACGGTCAATCACATCGCGAAAAGGCATCCGCAGCGGCGGTAACGGGCGCGTGCCTAAAATTTCCTGATg < 1:1145106/230‑1 (MQ=255)
aTTGCGTCGTCAAAAGAGAT‑CCAAGAGG‑GT‑TTGGC‑GGTAAT‑TTTAAA‑GACCTGGCCTAAATC‑CGCCTC‑GGGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCGGAAACTAATGCCTGCTCAACACGGTCAATCACATCGCGAAAAGGCATCCGCAGCGGCGGTAACGGGCGCGTGCCTAAAATTTCCTGATg < 1:617902/239‑1 (MQ=255)
ataaagggacagt‑CACAGAGG‑GT‑TTGGC‑GGTAAG‑GTTATA‑ACCCGGGCCTAAACC‑CGCCTC‑GAGATTAACCCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCGGAAACTAATGCCTGCTCAACACGGTCAATCACATCGCGAAAAGGCATCCGCAGCGGCGGTAACGGGCGCGTGCCTAAAATTTCCTGATGCCCCATa < 1:764487/227‑1 (MQ=255)
gtcAAAAGAGAT‑CACAGAGA‑GT‑TTGGC‑GGTAAT‑GTTATA‑GACCTGGCCTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCGGAAACTAATGCCTGCTCAACACGGTCAATCACATCGCGAAAAGGCATCCGCAGCGGCGGTAACGGGCGCGTGCCTAAAATTTCCTGATGCCCCaca < 1:923583/238‑3 (MQ=255)
aaagggatcgagaggggtttGGC‑GTTAAT‑GTTATA‑GCCCTGGCCTAAATC‑CGCCTG‑GAGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCGGAAACTAATGCCTGCTCAACACGGTCAATCACATCGCGAAAAGGCATCCGCAGCGGCGGTAACGGGCGCGTGCCTAAAATTTCCTGATGCCCCATAAAGGt < 1:348622/221‑1 (MQ=255)
tcacgggggatttGGG‑GGTAAT‑TTTATA‑CGCCTGGCAAAAACC‑CCCCTC‑GGAGTTACCGCAAATCCCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCGGAAACTAATGCCTGCTCAACACGGTCAATCACATCGCGAAAAGGCATCCGCAGCGGCGGTAACGGGCGCGTGCCTAAAATTTCCTGATGCCCCATAAAGGTATCGc < 2:379459/226‑1 (MQ=255)
aaggagaaggggC‑GGTAAT‑GGAAAG‑AACCTGGCATAAATG‑CCCCGG‑TAGATTATCACCAAACGCAAACCACCGAGTGACCCACAGAAATTGCAGATCACCGCCACGGC‑GCTCCACCGGCCAGCCAGCGGAAACTAATGCCTGATCAACACGGTCAATCACAGCGCGAAAAGGCATCCGCAGCGGCGGTAACGGGCGCGTGCCTAAAATTTCCTGATGCCCCATAAAGGTATCGCCACCt < 2:957405/229‑1 (MQ=255)
t‑GTTTTA‑GCCCTGGCCTAAGTC‑CGCCTC‑GAGATTATCGCCAATCGCACCCGCCTGATTGACCCACAGAAATTGCAGATCAGCGCCACGGC‑GCTCCACCTGCCAGCCAGCGGAAACTAATGCCTGCTCAACACGGTCAATCACATCGCGAAAAGGCATCCGCAGCGGCGGTAACGGGCGCGTGCCTAAAATTTCCTGATGCCCCATAAAGGTATCGCCACCTTCATGTTGCAGCTCTGcc < 1:714125/239‑1 (MQ=255)
t‑GTTATA‑GCCCTGGCCTAAACC‑CGCCCC‑GAGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCCCCTGCCAGCCAGCGGAAACTAATGCCTGCTCAACACGGTCAATCACATCGCGAAAAGGCATCCGCAGCGGCGGTAACGGGCGCGTGCCTAAAATTTCCTGATGCCCCATAAAGGTATCGCCACCTTCATGTTGCAGCTCTGcc < 1:1156964/239‑1 (MQ=255)
gtttAAA‑GCCCGGGCCTAAATC‑CGCCTC‑GAGATTACCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCGGAAACTAATGCCTGCTCAACACGGTCAATCACATCGCGAAAAGGCATCCGCAGCGGCGGTAACGGGCGCGTGCCTAAAATTTCCTGATGCCCCATAAAGGTATCGCCACCTTCATGTTGCAGCTCTGcc < 1:659802/237‑1 (MQ=255)
gTTAAA‑GCCCTGGCCTAACTC‑CGCCTC‑GAGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCGGAAACTAATGCCTGCTCAACACGGTCAATCACATCGCGAAAAGGCATCCGCAGCGGCGGTAACGGGCGCGTGCCTAAAATTTCCTGATGCCCCATAAAGGTATCGCCACCTTCATGTTGCAGCTCTGcc < 1:998132/238‑1 (MQ=255)
ttATA‑GCCCTGGCCTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCGGAAACTAATGCCTGCTCAACACGGTCAATCACATCGCGAAAAGGCATCCGCAGCGGCGGTAACGGGCGCGTGCCTAAAATTTCCTGATg < 1:869029/197‑1 (MQ=255)
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TCGACGCCATAG‑CCCATATGCACGACCTGGAAACCGTTGTCATAAGCGCCAGAACGCGGCGCATTGATACCAATAAAGCGCCCTTCTTTGCTTTCTGCGGCATCGAGAATGCGTTGACTGTCGGTTAACAGGCCACCAAA‑TGTAATGACCCGACCGACCTGTACCTGCTCACGCACGATACGACCAATTTTGATTGCGTCGTCAAAAGAGAT‑CACAGAGA‑GA‑TTGGC‑GGTAAT‑GTTATA‑GACCTGGCCTAAATC‑CGCCTC‑GAGATTATCGCCAATCGCAACCGCCTGATTGACCCACAGAAATTGCAGATCATCGCCACGGC‑GCTCCACCTGCCAGCCAGCGGAAACTAATGCCTGCTCAACACGGTCAATCACATCGCGAAAAGGCATCCGCAGCGGCGGTAACGGGCGCGTGCCTAAAATTTCCTGATGCCCCATAAAGGTATCGCCACCTTCATGTTGCAGCTCTGCC > NC_000913/3509120‑3509590
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
