Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F27 I0 R1 322 127.1 2757226 91.8% 2531133 223.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,159,200 A→C 11.6% T238P (ACT→CCT)  oxyR → oxidative and nitrosative stress transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,159,2000AC11.6% 445.4 / 3.3 168T238P (ACT→CCT) oxyRoxidative and nitrosative stress transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base A (75/65);  new base C (9/16);  total (84/84)
Fisher's exact test for biased strand distribution p-value = 1.30e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 168 total aligned reads displayed.

CGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGT‑ACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATGAGCAGCTGGCAGAGGCCATCCGCGCAAGAATGGATGGCCATTTCGATAAAGTTTTAAAACAGGCGGTTT‑AAACCGTTTAACGCAGCTACCCGATAGGCT  >  NC_000913/4158964‑4159434
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                           
cGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGT‑ACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGCCGGCAGGAACCGGGATCCCt                                                                                                                                                                                                                                           >  1:76813/1‑239 (MQ=255)
      ttGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGT‑ACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTg                                                                                                                                                                                                                                     <  1:340469/239‑1 (MQ=255)
                 attttGGTGGCTATCTTGGAAGGTCACGCGTGGGCGAACCGCGAATGCGT‑ACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCGGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCgctggc                                                                                                                                                                                                                          <  2:1056284/236‑1 (MQ=255)
                       cTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGT‑ACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCCCTTTACTGCCAGCGCTGGCTGTgc                                                                                                                                                                                                                     >  1:429186/1‑238 (MQ=255)
                       cTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGT‑ACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCACCGCGGGCTGTgc                                                                                                                                                                                                                     >  1:326709/1‑238 (MQ=255)
                              tctatGAAGATCACCCGTGGGCGAACCGCGAATGCGT‑ACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAg                                                                                                                                                                                                             <  1:395671/239‑1 (MQ=255)
                                 atGAAGATCACCCGTGGGCGAACCGCGAATGCGT‑ACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACCCTTCCGCGCGGCCAGCCTGGAAACTCCTGGCAGCATGGGGGCGGCAGGGAGCGGGATCACTTTACTGCCACCCCCGGCTGGGCGGCGGGGgcgg                                                                                                                                                                                                          >  2:1348787/1‑238 (MQ=255)
                                  ggAAGATCCCCCGTGGGCGAACCGGGAATGCGT‑ACCGATGGCCGATCTGGCGGGGGAAAACCTGCTGAGGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAAGGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCa                                                                                                                                                                                                         <  2:912286/238‑1 (MQ=255)
                                   gAAGATCCCCCGGGGGCGAACCGGGAAGGCGT‑ACCGATGGGCGATCTGGAAGGGGAAAAACTGCTGATGCTGGAAGATGGGCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCaa                                                                                                                                                                                                        <  2:1371852/239‑1 (MQ=255)
                                    aaGATCACCCGTGGGCGAACCGCGAATGCGT‑ACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGACTGGAAACTCTGCGCAACATGGGGGCGGCCGGGAGCGGGGTCACTTTACTGCCAGGGCTGGCCGGGCCGCCgggagcgaaa                                                                                                                                                                                                       >  2:1023381/1‑231 (MQ=255)
                                     aGATCACCCGTGGGCGAACCGCGAATGCGT‑ACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCaaa                                                                                                                                                                                                       <  1:1105176/238‑1 (MQ=255)
                                      gATCACCCGTGGGCGAACCGCGAATGCGT‑ACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCCGGTAGCGGGATCCCTTTACTCCCAGCCCTGGCTGGGCCCCCgggggcaaaaag                                                                                                                                                                                                     >  2:1312566/1‑229 (MQ=255)
                                         cACCCGTGGGCGAACCGCGAATGCGT‑ACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGGTGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGGTCACTTTACTGCAACCGCTGGCTGTGCCGCCGGAGCGCAAAagccc                                                                                                                                                                                                  >  2:521974/1‑237 (MQ=255)
                                         cACCCGTGGGCGAACCGCGAATGCGT‑ACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGGGCCGCCGGAGGGCAAACGCGa                                                                                                                                                                                                  >  1:662318/1‑239 (MQ=255)
                                         cACCCGTGGGCGAACCGCGAATGCGT‑ACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAAAATGGTGGCGGCAGGTGGCGGGGTACCTTTACTGCAACGCCCGGCTGTGCCGCCGGAGGGCAAAccgcg                                                                                                                                                                                                  >  2:121269/1‑235 (MQ=255)
                                          ccccggggggaacctgggAATGCGTCACCG‑TGGCCGTTCTGGCAGGGGAAAAACTGCGGGGGCTGGAAGATGGGCGCGG‑TTTGCGCGAGCAGGCAATGGGTTTCTGGTTTGAAGCCGGGGCGGATGAAGATACACGCTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGa                                                                                                                                                                                                  <  2:411309/221‑1 (MQ=255)
                                          aCCCGTGGGCGAACCGCGAATGCGT‑ACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACCCACTTCCGCGCGCCCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGACTACTTTACTGCACGGCCGGGCTGTGCCGCCgggggggaaagcggat                                                                                                                                                                                                 >  2:803959/1‑225 (MQ=255)
                                          aCCCGTGGGCGAACCGCGAATGCGT‑ACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACCCTGCGCAACCTGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCCCTGGCCGGGCCGCCGGAGCGCAAACGGGAt                                                                                                                                                                                                 >  1:742795/1‑239 (MQ=255)
                                             cgggggCGAACCGCGAATGCGT‑ACCGTTGGCCGATCGGGCAGGGAAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAGCATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATggg                                                                                                                                                                                              <  1:1348787/236‑1 (MQ=255)
                                                gggCGAACTGCGAAAGGGT‑CCCGATGGCCCGTCGGGCAGGGGAAAAACTGGTGATGCGGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGgt                                                                                                                                                                                            <  2:1184488/238‑1 (MQ=255)
                                                gggCGAACCGGTGATGCGG‑ACCGATGGCCGATCGGGCAGGGGAAAAACTGCTTATGCTGGAAGGTGGTCATTG‑TTTGCGCGATCAGTCAATGGGTTTCTGTTGTGAAGCCGGGGCGGATGAAGATACTCACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGgt                                                                                                                                                                                            <  1:312445/238‑1 (MQ=255)
                                                 ggCGAACCGCGAATGCGT‑ACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATACCTTTACTGCCACCGCTGGCTCTGCCGCCGGAGGGCAAACGCGCTGGGgttg                                                                                                                                                                                          >  1:263191/1‑239 (MQ=255)
                                                      aCCGGGAATGCGT‑ACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTAt                                                                                                                                                                                     <  1:24807/239‑1 (MQ=255)
                                                       ccggtgaTGCGG‑ACCGGTGGCCTACCTGGCAGTGGAAAAACTGCTGAGGCGGGAAGATGGTCACTG‑GTTGCACGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTAt                                                                                                                                                                                     <  2:97899/232‑1 (MQ=255)
                                                            aaTGCGT‑ACCGATGGCCGATCTGGCGGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGcc                                                                                                                                                                                <  1:620500/238‑1 (MQ=255)
                                                              ttggggatggttGGCCGTTTGGGGAGGGGAAAAACTGTTGATGCTGGAAGTGGGGCCCGG‑TTTGCGCGATCAGGCCATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACGCTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCg                                                                                                                                                                               <  2:124801/227‑1 (MQ=255)
                                                                  t‑ACCGGTTGCCGGTCTGGCAGGGGAGAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGTAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCAt                                                                                                                                                                          <  1:166641/238‑1 (MQ=255)
                                                                  t‑ACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCAt                                                                                                                                                                          <  1:951255/238‑1 (MQ=255)
                                                                  gtcccGCTGGCCGATTTTGGAGGGGAAAAACTGCTGTTGCTGGAAGATGGGCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGGTCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCAt                                                                                                                                                                          <  2:525191/236‑1 (MQ=255)
                                                                  ctgccgggtgcctgtttggggggggAAAACCTGTGGGTGTGGGAAGAGGGTCCCTG‑TCTGCGCGATGAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGCTGAAGATACGCAGTTCCGCGGGACCAGCCTGGAAACTCGGCGTAACATGGTGGCGGCAGGTAGCGGGAGCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCAt                                                                                                                                                                          <  2:1243016/218‑1 (MQ=255)
                                                                   cgccGGTGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCAt                                                                                                                                                                          <  1:710152/236‑1 (MQ=255)
                                                                    aCCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCAtt                                                                                                                                                                         <  1:131024/238‑1 (MQ=255)
                                                                       gtttgCCGATCTGGAAGGGGAAAAACTGGTGACGCGTGAAGGTGGTCTCTG‑TGTGCGCGAGCCGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGAAGAAGATACAGACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGc                                                                                                                                                                     <  2:489531/235‑1 (MQ=255)
                                                                        aTGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCCCTTTACTTCCAGCGCTGGCTGTGCCGCCGCACCGCAAACGCGGTGGGGTGGTTTTTCTCCCGTGCCTTAAAcc                                                                                                                                                                    >  2:214335/1‑239 (MQ=255)
                                                                        aTGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCCCTTTACTGCCAGCGCTGGCTGGGCCCCCGGAGCGACAACCCGATGGGGTGGTTTTCCCGCCTGGCATTAAGcg                                                                                                                                                                    >  2:964803/1‑238 (MQ=255)
                                                                                tCTGGCAGGGGAAAAACTGCTGATGCTGGATGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCCCTGGCTGTGCCGGCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGGGCCTTAAGCCGGAAccc                                                                                                                                                             >  1:787297/1‑237 (MQ=255)
                                                                                tCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAAcaa                                                                                                                                                             >  1:839683/1‑236 (MQ=255)
                                                                                tCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCCGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGGGCATTAAGCCGGAACCa                                                                                                                                                             >  1:525900/1‑238 (MQ=255)
                                                                                 cTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCAcg                                                                                                                                                           <  1:1259447/239‑1 (MQ=255)
                                                                                     cAGGGGAAAATCTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCAcgccg                                                                                                                                                        <  1:904365/238‑1 (MQ=255)
                                                                                     cAGGGGAAAAACTGCTGATGCTGGAAGTTGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACGCACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCAcgccg                                                                                                                                                        <  1:361709/238‑1 (MQ=255)
                                                                                     cAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCAcgccg                                                                                                                                                        <  1:1257302/238‑1 (MQ=255)
                                                                                           aaaaaCTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTAt                                                                                                                                                  <  1:1003320/238‑1 (MQ=255)
                                                                                              acttgcttttGCTGGAAGAT‑GTCCCTGTTTTTGGGGATCAGGAAAGGGGTTTCGTTTTTGAAGCCGGGGCGGATGAAGATCCCCCTTTCCGGCGGTCCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTCCTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGc                                                                                                                                              <  2:81142/230‑1 (MQ=255)
                                                                                              aaCTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGAGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGc                                                                                                                                              <  1:121269/239‑1 (MQ=255)
                                                                                                  gctgATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTCTTTGCCTgg                                                                                                                                          >  1:968481/1‑239 (MQ=255)
                                                                                                      gttgtGGAAGTTGGTCACTT‑TGTGCGGTACCAGGAAATGGGTTTCGGTTTTGAAGCCGGGGCGGATGAAGGTACACACTTCCGCGCGGCCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTTGCGGGATCCCTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTa                                                                                                                                      <  2:429186/235‑1 (MQ=255)
                                                                                                                     cccTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACTCTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCAc                                                                                                                        <  1:1162785/236‑1 (MQ=255)
                                                                                                                             tGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGGTTATCTGCCGTGCCTTAAGCCGGGACCCCGCCGCCCCATTGGCCTGGTTTATCCTCCTGGCTCACCGCCgcgc                                                                                                                >  2:1162785/1‑239 (MQ=255)
                                                                                                                             tGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCACAAACGCGATGGGGATGTTTATCTGCCGTGCATTAACCCGGAACCACCCCGCACTATTGGCCTGGTTTATCGTCCAGGGTCACCGCAgcgg                                                                                                                >  1:934140/1‑238 (MQ=255)
                                                                                                                             tGCGCGATCAGGCAATGGGTTTCTGTTGTGAGGCCGGGGCGGATGAAGATACCCGCTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTgcg                                                                                                                 <  1:793048/238‑1 (MQ=255)
                                                                                                                               cgcaATCGGGCAATGGGTTTTTTTTTTGAAGCCGGGGCGGATAAAGATCCACACTTCCGCGCGACCAGCCTGGAAGCTCTGCGCAACTGGGGGGCTGCAGGTAGCGGGATCCCTTGACTGCCAGCGCTGGCTGTGCCTCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAg                                                                                                              <  2:249944/239‑1 (MQ=255)
                                                                                                                                            tGGGTTTTTGTTTTGAGGCGGGGGGGGATGAAGATACCCCCTTCCGGGGGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCCCTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATGagcag                                                                                                 <  2:953053/239‑1 (MQ=255)
                                                                                                                                            tGGGTTTCTGGTTTGAGGGCGGGGCGGATTAAGATTCCCACTTCCGCTCGTCCAGCCTGGAAACTCGGCGCAACAGGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAACCGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATGagcag                                                                                                 <  1:337855/239‑1 (MQ=255)
                                                                                                                                              ggTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCCATGagca                                                                                                  >  1:844540/1‑236 (MQ=255)
                                                                                                                                                  tgtGTTTTGAAGCCGGGGGGGATGAAAATACAACCCTCCGGGCGACCGGTCGGGAACCTCGGGCCACCATGGGTGCGCAAGGTAGCGGGTACCCTTTACTGCCAGCGCTGGCTGTGCGGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGACCCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATGAGCAGCTGGCa                                                                                           <  2:1018978/237‑1 (MQ=255)
                                                                                                                                                  tCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCAcgccg                                                                                                                                                        <  1:823741/178‑1 (MQ=255)
                                                                                                                                                  tCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGGTTTTCGTCCTGGCTACCCGCCGCGCCACCGCCAAGaggagcgtgaa                                                                                           >  2:617550/1‑234 (MQ=255)
                                                                                                                                                  tCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGGTGTTTATCTGCCGGGCATTACGCCGGACCCACGCCGCACTAATGGCCTGGTTTATCGGCCTGGCTCACCGACCCCCAGCCGCCATGagcagcgtgaa                                                                                           >  2:1274521/1‑234 (MQ=255)
                                                                                                                                                    tGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGGAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCCCTATTGGCCTGGTTTATCGTCCCGGCCCACCGCCGCGCAGCCCCAATAAGCAACTGGCcga                                                                                         >  2:266508/1‑239 (MQ=255)
                                                                                                                                                      ttttGAAGCCGGGGCGGATGAAGTTACACCCTTCCGCGCGCCACGCCTGGAAACCCTTGGCAACATGGGGGCGGCAGGTCGCGGGATCTCTTTCCTGCCAGCGCGGGCTGGGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATGAGCAGCTGGCAGAgg                                                                                       <  2:392615/239‑1 (MQ=255)
                                                                                                                                                        ttGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATGGGCGCCTGCGAGAGGc                                                                                      >  1:454060/1‑238 (MQ=255)
                                                                                                                                                          gAAGCCGGGGCGGATGAAGATACCCACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATGAGCAGCTGGCAGAGGCCAt                                                                                   <  1:266508/239‑1 (MQ=255)
                                                                                                                                                           aggtcGGGGGGGATGAACTTACACTCTTCCGCGGGACCGGGCGGGAAACTGTGGGAAACTGGGTGGCGGCAGGTGGCGGGATCACTTTACTGCCTGCGCGGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAGCCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATGAGCAGCTGGCAGAGGCCATc                                                                                  <  2:76035/235‑1 (MQ=255)
                                                                                                                                                               cgggtgggagaaaGTTACACCCTTCCGCGCGACCATCCTGGAAACTCTGCGGAACATGGGGGCGGCAGGTAGGGGGCTACCTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTAGCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATGAGCAGCTGGCAGAGGCCATCcg                                                                                <  2:839683/226‑1 (MQ=255)
                                                                                                                                                                ggggCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGGAAACGCGATGGGGTTGTTTATCTGCCGTTCATTAAGCCGGACCCACGCGGCCCTATTGGCCTGGTTTTTCTTCCTGGCTCACGCCCGCGCAACCCGCAACAGCCGCTGGCAAAGGCCATcccggc                                                                             >  2:738172/1‑235 (MQ=255)
                                                                                                                                                                ggggCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATGAGCAGCTGGCAGAGGCCATCCgcgc                                                                             >  1:268544/1‑239 (MQ=255)
                                                                                                                                                                ggggCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCCATGAACACCTGGCAGAGGCCATCCccgc                                                                             >  1:465830/1‑239 (MQ=255)
                                                                                                                                                                                cacacTTCCGCGCGACCAGCCGGGAAACCCTGCGCAACATGGTGGCGGCAGGTAGCGGGTTCCCTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATGAGCAGCTGGCAGAGGCCATCCGCGCAAGAATGGATGGCCAt                                                             <  1:1054059/239‑1 (MQ=255)
                                                                                                                                                                                     ttCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCCTTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCCCTGCGCAGCCGCCTTGAGCACCTGGCCAAGGCAATCCGCGCAACACTGGGTGGCCAtttggg                                                        >  2:311395/1‑236 (MQ=255)
                                                                                                                                                                                     ttCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCCCTATTGGCCTGGTTTATCGTCCTGGTTCACCCCTGGGCAGCCGCTATGAGCAGCTGGCAAGGGCCACCCGCCCAAAAATGGAAGGCCATTTAGa                                                        >  2:8345/1‑239 (MQ=255)
                                                                                                                                                                                       ccGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCCCTATTGGCCTGGTTTATCGTCCTGGCTCACCCCTGCGCAGCCGCTATTGCCAGCGGGCAGAGGCCCCCCGCCCAAAAATGGAGGGCCATTTCGaaa                                                      >  2:1215074/1‑237 (MQ=255)
                                                                                                                                                                                       ccGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATGAGCAGCTGGCAGAGGCCATCCCCGCAAGAATGGATGGCCATTTCGTTa                                                      >  1:974935/1‑239 (MQ=255)
                                                                                                                                                                                        cgcgggtcccgcttggcacccttGCGAAACAGGGGGGCGGGGGGGGGCGGGACCCCTTTACGGCCAGCGCTGGGGTGGCCGCCGGAGCGCAACCGCATTGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTAACCGCTGCGCAGCCGCTATGAGCAGCTGGCAGAGGCCATCCGCGCAAGAATGGATGGCCATTTCGATaa                                                     <  2:787297/217‑1 (MQ=255)
                                                                                                                                                                                        cgcgcgACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCa                                                                                                                                                                                                         <  2:824289/91‑1 (MQ=255)
                                                                                                                                                                                        cgcgcgACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCa                                                                                                                                                                                                         >  1:824289/1‑91 (MQ=255)
                                                                                                                                                                                          cgcgACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATTAGCAGCTGGCAGAGGCCATCCGCGCAAGAATGGCTGGCCATTTCGCTAAAg                                                   >  1:1226465/1‑239 (MQ=255)
                                                                                                                                                                                          cgcgACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCCCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTCCGCAGCCCTTATGAGCAGCTGGCAGGGGCCATCCGCGCAAGAATGGATGGCCATTTCGAAAAAg                                                   >  2:1122634/1‑239 (MQ=255)
                                                                                                                                                                                                     ttggaccctttggcAACTTGGGGGCGGGAGGTGGGGGGTGTCCTTTAGTGCCAGGTCTGGTCGGGCAGCCGGGGCGCAAACGCGAGGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTGTCGTCCTGGCTCACCGCTGCGCAGCCGCTATGAGCAGCTGGCAGAGGCCATCCGCGCAAGAATGGATGGCCATTTCGATAAAGTTTTAAAACAg                                        <  2:659054/227‑1 (MQ=255)
                                                                                                                                                                                                     tGGAAACTCGGCCCAACAGGGTGGCGGGAGGTAGCGGGATCACTTTCATGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTAACTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATGAGCAGCTGGCAGAGGCCATCCGCGCAAGAATGGATGGCCATTTCGATAAAGTTTTAAAACAg                                        <  1:1312566/239‑1 (MQ=255)
                                                                                                                                                                                                     gggAAACTCGGCGCAACAGGGTGTCGGCAGGTAGCGGGATCACTTTGCTGCCAGCGCGGGCTGTGCCGCCGGAGCGCAAACGGGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATGAGCAGCTGGCAGAGGCCATCCGCGCAAGAATGGATGGCCATTTCGATAAAGTTTTAAAACAg                                        <  1:1238992/238‑1 (MQ=255)
                                                                                                                                                                                                      ggAAACTGTGCCAAATATGGTGGCGCGAGGTAGGGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGAAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATGAGCAGCTGGCAGAGGCCATCCGCGCAAGAATGGATGGCCATTTCGATAAAGTTTTAAAACAgg                                       <  1:102246/239‑1 (MQ=255)
                                                                                                                                                                                                          aCTCTCCGAAACTTGGGGGGGGCAGGTGGGGGGACCCTTTTTCCGCGCGCGGTGGCTGGCGCGGCGGGGCGAAAACGCGATGGGGTTGTTTATTGGCCGGGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCGCACCGCTGCGCAGCCGCTATGAGCAGCTGGCAGAGGCCATCCGCGCAAGAATGGATGGCCATTTCGATAAAGTTTTAAAACAGGCGGt                                   <  2:17131/239‑1 (MQ=255)
                                                                                                                                                                                                             ctGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAg                                                                                                              >  1:560506/1‑161 (MQ=255)
                                                                                                                                                                                                             ctGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAg                                                                                                              <  2:560506/161‑1 (MQ=255)
                                                                                                                                                                                                             ctGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATGag                                                                                                    >  1:237646/1‑171 (MQ=255)
                                                                                                                                                                                                             ctGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATGAGCAGCTGGCAGAGGCCATCCGCGCAAGAATGGATGGCCATTTCGCTAAAGTTTTAAAAAAGGCGGTTT‑a                               >  1:1318379/1‑239 (MQ=255)
                                                                                                                                                                                                              tGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCGGCTATGAGCAGCTGGCAGAGGCCATCCGCGCACGAATGGGTGGCCCTTTCGATAAAGTTTTAAAAAAGGCGGTTT‑aa                              >  2:870627/1‑239 (MQ=255)
                                                                                                                                                                                                               gcgcAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATGAGCAGCTGGCAGAGGCCATCCGCGCACGAATGGATGGCCATTTCGATAAAGTTTTAAAACAGGCGGTTT‑aa                              >  1:175635/1‑238 (MQ=255)
                                                                                                                                                                                                               gcgcAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATGAGCAGCTGGCAGAGGCCATCCGCGCAAGAATGGATGGCCATTTCGTTAAAGTTTTAAAACAGGCGGTTT‑aa                              >  1:451984/1‑238 (MQ=255)
                                                                                                                                                                                                               gcgcAACATGGGGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATGAGCAGCTGGCAGAGGCCATCCGCGCAAGAATGGATGGCCATTTCGATAAAGTTTTAAAACAGGCGGTTT‑aaa                             <  1:521974/239‑1 (MQ=255)
                                                                                                                                                                                                                cgcAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCAcgccg                                                                                                                                                        >  2:394532/1‑116 (MQ=255)
                                                                                                                                                                                                                cgcAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCAcgccg                                                                                                                                                        <  1:394532/116‑1 (MQ=255)
                                                                                                                                                                                                                cgcAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCCCTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCCATGAGCCGCTGGCACAGGCCCTCCCCCCCAGAAGGGATAGCCATTTCGATACAGTTTTAAAAAACGCGGTTT‑taa                             >  2:467381/1‑238 (MQ=255)
                                                                                                                                                                                                                 gcAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTCCGCAGCCCCTATGCGCAGCCGGCCGAGGCCATCCCCGCAAGAATGGAGGGCCATTTTGATAAAGTTTTAAAACAGGGGGGTT‑aaaac                           >  2:1037690/1‑237 (MQ=255)
                                                                                                                                                                                                                           ggcgggcgGTAGGGGGACTCCTTTACCGCCAGCGCTGGCCTTGCCGCCGGGGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATGAGCAGCTGGCAGAGGCCATCCGCGCAAGAATGGATGGCCATTTCGATAAAGTTTTAAAACAGGCGGTTT‑AAACCGTTTAACGc                  <  1:803393/238‑1 (MQ=255)
                                                                                                                                                                                                                               gcAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTTTGAGCAGCTGGCAGAGGCCATCCGCGCAAGAAGGGATGGCCCTTTCGATAAAGTTTTAAAACAGGGGGTTTAAAACGGTTTAAccaaca               >  2:709093/1‑233 (MQ=255)
                                                                                                                                                                                                                               gcAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATGAGCAGCTGGCAGAGGCCATCCGCGCAAGAATGGATGGCCATTTCGATAAAGTTTTAACACAGGCGGTTT‑AAAACGTTTAAagcagca              >  1:1226497/1‑237 (MQ=255)
                                                                                                                                                                                                                               gcAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATGAGCAGCTGGCAGAGGCCATCCGCGCAAGAATGGATGGCCATTTCGATAAAGTTTTAAAACAGGCGGTTT‑TAACCAttaccttttaaac             >  1:1276827/1‑228 (MQ=255)
                                                                                                                                                                                                                                   gTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATGAGCAGCTGGCAGAGGCCATCCGCGCAAGAATGGATGGCCATTTCGATAAAGTTTTATAACAGGCGGTTT‑TAACCCTTTaaaccacgccaccg         >  1:628650/1‑227 (MQ=255)
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                           
CGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGT‑ACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTG‑TTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAGCCGCTATGAGCAGCTGGCAGAGGCCATCCGCGCAAGAATGGATGGCCATTTCGATAAAGTTTTAAAACAGGCGGTTT‑AAACCGTTTAACGCAGCTACCCGATAGGCT  >  NC_000913/4158964‑4159434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A