Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F27 I0 R1 322 127.1 2757226 91.8% 2531133 223.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,277,559 A→T 13.1% Y31F (TAT→TTT)  soxR → redox‑sensitive transcriptional activator of soxS, autorepressor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,277,5590AT13.1% 258.2 / 2.4 95Y31F (TAT→TTT) soxRredox‑sensitive transcriptional activator of soxS, autorepressor
Reads supporting (aligned to +/- strand):  ref base A (20/61);  new base T (12/2);  total (32/63)
Fisher's exact test for biased strand distribution p-value = 2.27e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

CTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTC  >  NC_000913/4277323‑4277786
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                    
cTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTTTg                                                                                                                                                                                                                                    >  1:915313/1‑239 (MQ=255)
 ttgTCAATAGTCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑a                                                                                                                                                                                                                                  <  1:1038881/237‑1 (MQ=255)
 tGGTCAATTTTCTCTTCAATCCATGCGATAAGATCCTGAATAATTTTCGGAGGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATg                                                                                                                                                                                                                                    <  2:1076470/238‑1 (MQ=255)
  ggTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACCCAGCGGTGGGGCGGCATGGGCGCTGCATTTCCTTG‑aa                                                                                                                                                                                                                                 >  2:1038881/1‑239 (MQ=255)
        tatGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTGTCGGGCCTGGCCTTTTTTG‑AAAGTaaa                                                                                                                                                                                                                           >  1:156730/1‑239 (MQ=255)
           ggtctgtaagccattgtaTAAGGTCTTTAATAATTTTCAGATGGGACTTAAATCTGCCTTTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTAGGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAggg                                                                                                                                                                                                                        <  2:314321/222‑1 (MQ=255)
           gccctgacaTCCATGCGATGAGATCCTGAATAATTTTCTGAAGGTACATAAATCTGCCTCTTTTCAGTGTGCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCTAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAggg                                                                                                                                                                                                                        <  1:98914/231‑1 (MQ=255)
           gcccGTTAATCCTTGAGATAAGGTCCTGAATAATTTTCTTATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAAGTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAggg                                                                                                                                                                                                                        <  2:733348/236‑1 (MQ=255)
           gCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAggg                                                                                                                                                                                                                        <  1:1159545/239‑1 (MQ=255)
             tCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGGATCGGGGCTGAGTTTCTTTG‑AAAGTAAAGGGtt                                                                                                                                                                                                                      >  1:1204249/1‑239 (MQ=255)
              cGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGGACCGGCGCTGCATTTCTTTT‑GAAGTAAAGGGTTg                                                                                                                                                                                                                     >  1:980821/1‑239 (MQ=255)
              cGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGCTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGACAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTCTGGCGGAGTCCGGGCCGCCTTTTCATG‑AAAGAATAGGGtcg                                                                                                                                                                                                                     >  1:1045735/1‑237 (MQ=255)
               gttcaTCCTTGCTATAAGTTCCTGAATAATTTTCTGGTGGGGCATAAATGTGCCTCTTTCCAGTGTTCAGTTCGTTAATTCATCTTGTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAAGTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGa                                                                                                                                                                                                                    <  2:1020802/235‑1 (MQ=255)
               gTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGa                                                                                                                                                                                                                    <  1:423885/239‑1 (MQ=255)
                tCAATCCTTGCGATAAGATCCTGAATAATTTTTTGATGGGACATAAATCTGCCTTTTTGCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGAt                                                                                                                                                                                                                   <  2:1111805/239‑1 (MQ=255)
                  aaTCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCCGCCTTTCTTTGAAAAGAAAAggggggata                                                                                                                                                                                                                  >  2:470933/1‑233 (MQ=255)
                    tCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATATGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGCTTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCAAGTCTTAG‑ACAAAAAAGGGGTGATTagc                                                                                                                                                                                                               >  2:1151629/1‑237 (MQ=255)
                     ccATGGGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCa                                                                                                                                                                                                              <  1:1160004/239‑1 (MQ=255)
                     ccATGCGTTAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTTTGCAGTTCTTTAATTCATCTGTTTGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCTATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCa                                                                                                                                                                                                              <  1:505623/239‑1 (MQ=255)
                     acttgcttttagtccctatataatTTTCTGTGGGGACTTAAATCTCCCTCTTTCCAGTGTTGCGTGCGTTACGTCATCTGTGGGGGAGAAAAAGTCCACACAGAAAATTGAGGCAAAGCGATTTAAGGAAAAGAAAGTACCGCTTATTAAAGCGCTGCTAACCCCCGTTGAAGTGGCGAAACGCAGCAGTGTGGCGGTAACGGCGCTGCATTTCTATG‑AAAGTAAAGGGTAGAGTACCa                                                                                                                                                                                                              <  2:783872/220‑1 (MQ=255)
                       ctggtaTAAGTTCCTGATTAATTTTCTGATGGGACATAAATTTTCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGt                                                                                                                                                                                                            <  2:686351/234‑1 (MQ=255)
                             tAAGATCCTGAATTATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGt                                                                                                                                                                                                      <  1:1361697/239‑1 (MQ=255)
                                     tGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCCGTTCTATG‑TACATAAAAGGGTGGTGACAAGAATCCGTAACaaagg                                                                                                                                                                                              >  2:1361697/1‑235 (MQ=255)
                                     tGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGCGTGGCGGGATCGGCCCGGCAGTTCTTTG‑GAACAAAAGGGTTGGTTACCAGATTCCggtacaaccg                                                                                                                                                                                              >  2:837920/1‑230 (MQ=255)
                                       aataatTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGGATCGGCGCTGCCATTTTATG‑CAAGACAAGGGGTGGTTAACAGCAACCGaaaaaagggga                                                                                                                                                                                            >  2:251599/1‑231 (MQ=255)
                                            ttttCCGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGGTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAg                                                                                                                                                                                       <  1:27016/239‑1 (MQ=255)
                                              ttCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTTTG‑AAAGTAAAGGGTTGATTACCCGTATCCGTAAAAGCGGCaacaaacg                                                                                                                                                                                     >  1:145789/1‑233 (MQ=255)
                                               ttttaTGGGACATAAATCTGCCTTTTTTAAGTGTTCAGTTCGTTAATTCATTTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAgcgg                                                                                                                                                                                    <  2:145789/235‑1 (MQ=255)
                                               tttGATGGGCAATAAATTGGCCTCTTTTCAGTGTTCAGTTCGTTAATTTCTCTGTTGGGGAGTATAATTCCCCAATTTAACTTGAGGTAAAGCGATTTAGGGAAAAGAAATTACACCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAAAAGCGGCAATCAgcgg                                                                                                                                                                                    <  2:1045735/237‑1 (MQ=255)
                                               gcTGATTGGACAGAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAgcgg                                                                                                                                                                                    <  1:1146325/238‑1 (MQ=255)
                                               agagacaggACATAAATTTGCCTTTTTTCAGTTTTCAGTTCGTTAATTCATGTGTTGGGGATTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAgcgg                                                                                                                                                                                    <  2:1085514/232‑1 (MQ=255)
                                                 tGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTGTCGGCGCTGCCTTTCTTTT‑AAAGGAAAAGGGGGAGTACCAGTATCCCAAAAACCGGCAAACacggggg                                                                                                                                                                                  >  2:445528/1‑233 (MQ=255)
                                                 tGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCCGCATTTCTTTG‑AAAATAAAGGGGTGATTACCCGTAACCGGAACAACGGCAATCAgcggcg                                                                                                                                                                                  >  2:1008014/1‑239 (MQ=255)
                                                     gggACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGatat                                                                                                                                                                              <  2:364262/239‑1 (MQ=255)
                                                      ggACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCCTTTCTATG‑AAAGTAAAAGGGTGGTTACCAGAATTCCTAAAAACGGGaaaaaacggggaacaa                                                                                                                                                                             >  2:267084/1‑225 (MQ=255)
                                                      ggACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATC‑AAAATAAAAGGTTGGTTACCAGGAACCGTaaaccggggaaaaaacggggaaaaa                                                                                                                                                                             >  2:922803/1‑216 (MQ=255)
                                                        aCATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATaa                                                                                                                                                                            <  1:1115655/238‑1 (MQ=255)
                                                            aaaTCTGCCTTTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTg                                                                                                                                                                       <  1:428860/239‑1 (MQ=255)
                                                               ttcgCCTTTTTTCAGTTTTTAGTTCGTTAATTTACTTGTTGGGGAGTATAATTCCTCAAGTAAACTTGAGGTAAAGGGATTTAGGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGAtg                                                                                                                                                                    <  2:156730/236‑1 (MQ=255)
                                                                  gCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑CAAGTAAAGGGTTGATTACCAGAATCCGTAAAAACGGCAAACAGCGGCGGTATaaaagccggctct                                                                                                                                                                 >  1:1085514/1‑229 (MQ=255)
                                                                   ccTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGGTGATTACCAGTATCCGTAACAGCGGGAATCAGCGGCGGTTTATACGTGATgtgtg                                                                                                                                                                >  1:888961/1‑238 (MQ=255)
                                                                   ccTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAACGGTGTGGCGGTATCGGCGCGTCATTTCTTTT‑GAAGTAAAGGGGTGATTTCCAAGATCCCTTACAGCGGCAATCAACAGCGAAATaaaaagggggggtt                                                                                                                                                                >  2:983642/1‑228 (MQ=255)
                                                                    ctttttctcgtgtTCAGTTCGGTAAGTCATGGGGTTGGGTGTAAAAGCCCCAAAGTTAACTGTAGGTAAAGCGATTTACGGAAAAGAAAATACCCCGCATTAAAGCGCTGCTAACCCCCGGCTAAGTGGCGAAACGGAGCGGGGTGGCGGTAGCGGCGCTGCATGTCTATG‑AAAGTAAAGGGTTGATTACCGGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTg                                                                                                                                                               <  2:974262/230‑1 (MQ=255)
                                                                      tttttCAGTGTTCAGTTCGTTAATTCATCTTTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAAGTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCg                                                                                                                                                             <  1:298825/238‑1 (MQ=255)
                                                                      ctTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGGATCGGCGCTGCCTTTCTATG‑AAAGGAAAGGGGTGATTACCAGAATCCGTAACACAGGCAATCAACGGGGGATTAAACGGGAGGCGTTGCg                                                                                                                                                             >  1:906297/1‑239 (MQ=255)
                                                                           cAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATg                                                                                                                                                        <  1:445528/239‑1 (MQ=255)
                                                                                ttCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAgcgg                                                                                                                                                                                    <  1:111801/206‑1 (MQ=255)
                                                                                ttCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGGATAGGCGCTGCCTTTCTATG‑AAAGGTAAGGGGTGGTTACCAGTATCCGTAACAACGGCAATCACCGGCGAGATAAAAGTGATTGGTTGCGGTATGTTGcg                                                                                                                                                   >  1:1157070/1‑238 (MQ=255)
                                                                                     ttCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAGCGTGATGTGTTGCg                                                                                                                                                             <  1:734953/224‑1 (MQ=255)
                                                                                          tAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCaaaa                                                                                                                                         <  1:228175/239‑1 (MQ=255)
                                                                                          tAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCCGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGGTATAAAAGTGATGTGTTGGGATATTTTTCAATTATCaaaa                                                                                                                                         >  1:655296/1‑239 (MQ=255)
                                                                                               tctttgtgGGGGAATTAAATTCCTGAATGTTACTTGAGGTAAAGGGAATTAAGGAAAAAAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCt                                                                                                                                    <  2:1204249/235‑1 (MQ=255)
                                                                                               tatcttgtGGGGAATATAATTCCTCAAGTTAACTTGAGGGAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCGGGGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCt                                                                                                                                    <  2:655296/232‑1 (MQ=255)
                                                                                               cATCTTGTGGGGAGTATAATTCCCAAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCt                                                                                                                                    <  1:1256675/239‑1 (MQ=255)
                                                                                               cATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCt                                                                                                                                    <  1:1128614/239‑1 (MQ=255)
                                                                                               cATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCt                                                                                                                                    <  1:1151629/239‑1 (MQ=255)
                                                                                                aTCTGTTGGGGAGTATAATTCCGCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTc                                                                                                                                   <  1:817725/239‑1 (MQ=255)
                                                                                                 tCTGTTGGGGAATATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCa                                                                                                                                  <  1:279401/239‑1 (MQ=255)
                                                                                                  cTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAg                                                                                                                                 <  1:267084/239‑1 (MQ=255)
                                                                                                               taATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTTTCCGCCCCGCCTTTTTATG‑AAAAGAAAAGGTTTGTTAACCGGACCCGTAAAACCGGCAATAAGCGCCCATATAAAACTGCTTTTTTTGGATTTTTTGCAATATTCAAAATTGCTTAACCGATTGTCAtt                                                                                                                     >  2:937909/1‑238 (MQ=255)
                                                                                                                     cTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCCGCCTTTCTATG‑AAAGACAAAGGGTGATTTCCCGTATCCGCACCAGCGGCCAATAGCGGCGAGATAAAACCGGTTGGTTTCGATATGTTTCAAATAACAAAAATGCACAACGAAtttgattttccccgg                                                                                                              >  2:74497/1‑226 (MQ=255)
                                                                                                                       cAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGAtata                                                                                                                                                                             <  2:1069802/174‑1 (MQ=255)
                                                                                                                       cAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCg                                                                                                            <  1:470933/239‑1 (MQ=255)
                                                                                                                       cAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAAGGGTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGAtata                                                                                                                                                                             >  1:1069802/1‑174 (MQ=255)
                                                                                                                         aGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCCGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTTCGATATGTTGCAATTATCAAAATTTGTCAGCGTATTGGCATTCCGCCGGGGa                                                                                                           >  1:1102514/1‑238 (MQ=255)
                                                                                                                          gTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑GAAGTaaa                                                                                                                                                                                                                           >  1:313845/1‑125 (MQ=255)
                                                                                                                          gTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTaaa                                                                                                                                                                                                                           <  2:313845/125‑1 (MQ=255)
                                                                                                                          gTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTAt                                                                                                                                              <  1:871832/202‑1 (MQ=255)
                                                                                                                           ttAACTTGAGGTAAATCGATTTATGGAAAAGGAATTACCCGGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCa                                                                                                        <  1:729589/239‑1 (MQ=255)
                                                                                                                                ttGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGt                                                                                                   <  1:251599/239‑1 (MQ=255)
                                                                                                                                 tGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTg                                                                                                  <  1:1276159/239‑1 (MQ=255)
                                                                                                                                            caTTGATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGGGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTg                                                                                         <  1:531018/236‑1 (MQ=255)
                                                                                                                                                tttGGAAAAGAAATTCCCCCGCATTAAAGCCCGGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTAACGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGGTTCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCgtgt                                                                                   <  2:353550/237‑1 (MQ=255)
                                                                                                                                                tATGGAAAAGAATTTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCgtgt                                                                                   <  1:1037/239‑1 (MQ=255)
                                                                                                                                                tATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGCTATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCCCTGGCGGCCATTGGTGAAGCGTTTggggggt                                                                                   >  1:407667/1‑234 (MQ=255)
                                                                                                                                                      aaaGAAATTACCCCGCTTTAAAGCGCTGCTAACCCCCGGGGAAGGGGCGAAACGGGGCGGTGTGGCGGTTTCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCg                                                                             <  2:269433/239‑1 (MQ=255)
                                                                                                                                                           aaTTACCCCGCATTAAAGCGCTGCCAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAggg                                                                        <  1:922803/239‑1 (MQ=255)
                                                                                                                                                                   cGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGtt                                                                <  1:289964/239‑1 (MQ=255)
                                                                                                                                                                   cGCATTAAAGCCCTGCAAACCCCCGGCGAAGTGGGGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGtt                                                                <  2:407667/239‑1 (MQ=255)
                                                                                                                                                                      cgtAAAGCGCTGCTAACCCCCGGGGAAGTGGAGAAACGCGGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAggg                                                                        <  2:928085/226‑1 (MQ=255)
                                                                                                                                                                          aaGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGGTATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAAGGCATACGTTAAGTGCg                                                         >  1:1057713/1‑239 (MQ=255)
                                                                                                                                                                           aGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTAGCCGTAACAGTGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGa                                                                                                 <  1:1217817/198‑1 (MQ=255)
                                                                                                                                                                                tgctAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTTGCATTCCGCTGGCGGCCCTTTGTGAAACGTTTGGCGGGTTGCCCGCAGGGCAAACGTTAAgctgtcttttt                                                   >  1:928085/1‑229 (MQ=255)
                                                                                                                                                                                              gAAGTGGCGAAACCGAGCGGTGGGGCGGTATCGGCGCTGCAGTTCTATG‑AAAGTAAAGGGTTGATTACCAGTAGCCGTAACAGCGGCAATCATCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCttt                                      <  1:740623/238‑1 (MQ=255)
                                                                                                                                                                                                             cggggTGTTGGGGTTTGGGCGGTGCATTTTTATT‑AAAGTAAAGGGTTGATTACCATTATGCGTAACAGCGGCAATCAGCGGCGATATAAACGGTATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCgag                       <  2:535030/235‑1 (MQ=255)
                                                                                                                                                                                                             aGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCgag                       <  1:1008014/238‑1 (MQ=255)
                                                                                                                                                                                                                           ttCGGCGTTTCATTTCTTTG‑AAAGTAAAGGGTTGATTTCCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGgc        <  2:980821/238‑1 (MQ=255)
                                                                                                                                                                                                                           aTCGGCGCTTCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGgc        <  1:353038/239‑1 (MQ=255)
                                                                                                                                                                                                                           aTCGGCGCTGCTTTTTTATG‑AAAGTAAAGGGTTTGTTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGgc        <  2:906297/239‑1 (MQ=255)
                                                                                                                                                                                                                            tctgcgtttctttttTATA‑AAAGTAAAGGGTTGATTTCCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATGTTCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGgcg       <  2:1157070/228‑1 (MQ=255)
                                                                                                                                                                                                                            tCGGCGCTGCATTTCTATG‑AAAGAAAAGGGTTGGTTTCCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGGTATGTTGCAATTATCAAAATTTCTCAGCGTATTGGGATTCCGCTGGCGACCATTTGGTAAGGGTTTGGCGGGTTGGCCGAACGGCATACGTTAAATGGGGAAGGGGGGGAACAGCATTTGTCCCAAAgggggagagaggtgggaagggg       >  2:321494/1‑219 (MQ=255)
                                                                                                                                                                                                                                 gttgtaTTTCTTTG‑AAAGTAAATTGTTTGTTTCCGGTGTCCGTAACAGGGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTc  <  2:120167/234‑1 (MQ=255)
                                                                                                                                                                                                                                 gcTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCAtt   <  1:983642/238‑1 (MQ=255)
                                                                                                                                                                                                                                    gCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCa                               <  2:440028/207‑1 (MQ=255)
                                                                                                                                                                                                                                    gCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCa                               >  1:440028/1‑207 (MQ=255)
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                    
CTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATG‑AAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTC  >  NC_000913/4277323‑4277786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A