Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F17 I0 R1
|
155 |
84.1 |
1797446 |
90.9% |
1633878 |
230.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
842,815 |
C→A |
17.2% |
Q162K (CAA→AAA) |
rlmF → |
23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 842,815 | 0 | C | A | 17.2%
| 140.9
/ 2.2
| 59 | Q162K (CAA→AAA) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| Reads supporting (aligned to +/- strand): ref base C (26/22); new base A (2/9); total (28/31) |
| Fisher's exact test for biased strand distribution p-value = 4.50e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CGGGCGGATTATATTCATCACCTTGCCGATTTACTGGCAGAAGCAAGCGGAACAATTCCAGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGC‑GACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCAGCAACAGGAGTTGTGGTGTGAAGGCGGTGAAGTCACCTTTATCAAAAAGATGATTGAAGAGAGCA > NC_000913/842578‑843052
|
cgggcGGATTTATTTCATCCCCTTGCCGATTTCCTGGCAGAAGCAAGCGGAAAAATTCCAGCGAATGCCATCATTATGGATACTGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGGGTTTTA‑CCGGTAGTGAAACCAGCCGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGc < 1:804806/238‑1 (MQ=255)
ggcGGATTATATTCATCACCTTGCCGATTTACTGGCAGAAGCAAGCGGAACAATTCCAGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCaaa > 2:279598/1‑239 (MQ=255)
ggcGGATTATATTCATCACCTTGCCGATTTACTGGCAGAAGCAAGCGGAACAATTCCAGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCCCCATTGGTCT‑GCGTCGGCaaa > 2:166844/1‑239 (MQ=255)
tcatccCCTTGCCTATTTACTGGCAGAAGCAAGGGGAACAATTCCCGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTgggg < 1:269627/239‑1 (MQ=255)
tcaacaCCTTGCCGATTTACTGGCAGAAGCAAGCGGAACAATTCCAGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTgggg < 2:264163/239‑1 (MQ=255)
tcaCCTTGCCGATTTACTGGCAGAAGCAAGCGGAACAATTCCAGCGACTGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATACGCTGATTGGCGTACATGACTATGGCTGGAGTTTTA‑CCGGTAGGGAAGACAGCGGCCCGGGGTTAAGCAGATGGCAGGCGATTTTCGGATATAAACCAGGGCATAACAGGCCCATTCGGCT‑GCGGCGGAACAAAGAGAGGGGGG‑CGa > 1:801309/1‑239 (MQ=255)
tcaCCTTGCCGATTTACTGGCAGAAGCAAGCGGAACAATTCCAGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGGGCAGGGGGTTATCAGTTCTAATCCGGGGTTTAACACCGCCATTC‑TCTGGCTGCGGCaaaaaaaaaaggggggga > 1:136163/1‑226 (MQ=255)
aCCTTGCCGATTTACTGGCAGAAGCAAGCGGAACAATTCCAGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGGGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGGCCCATTCGTCT‑GCGTCGGCAAAAAAAGAGTGGGG‑CGAtt > 2:678892/1‑239 (MQ=255)
tGCCGATTTACTGGCAGAAGCAAGCGGAACAATTCCAGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGGGTTAAGCAGTGCGCAGGCGCTTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGAAAAAAGAGAGGGGGG‑CGAGTTTTa > 1:582767/1‑239 (MQ=255)
tgcgttttCCTGGCAGAAGGAAGGGGAACAATTCCAGCGAATGCCAGCATTCTGGAGAGCGGTGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCGGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTaa < 1:861553/234‑1 (MQ=255)
gCCGATTTACTGGCAGAAGCAAGCGGAACAATTCCAGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTaa < 2:582767/239‑1 (MQ=255)
agcaagcGGAACAATTCCAGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGTTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATaaaa < 2:632373/239‑1 (MQ=255)
aagcGGGACAATTCCAGCGAATGCCAGCATTCGGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAAc < 2:898591/238‑1 (MQ=255)
aaatggAACAATTCCAGCGAATTCCCGCATTCTGGATTGCTGCTTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGGCAGGTCTTAAGCAGTGGTCAGGCAATTATCAGTTCTAATACGGGGCTTAACCGCGCCATTCGTAT‑GCGTCCGCAAAAAGAGAGCGGGG‑CGATTTTTAACGGCATCATCCATAAAAACg < 1:678892/235‑1 (MQ=255)
ggAACAATTCCAGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAg < 2:199260/237‑1 (MQ=255)
ggAAAAATTCCAGGGAATGCCAGGATTTGGGAAATCGGGGTTGGTGCAAACTGTATGTAACCGCTGATTGGTGTACATGAATATGGGTGGCGTTTTA‑CCGGTAGGGAAACCAGCAGCCAGGCGTTAAGCAGGTCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAg < 1:529862/237‑1 (MQ=255)
aaCAATTCCAGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACGTTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑Caa < 2:440757/238‑1 (MQ=255)
ttCCAGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATacgac < 2:346443/239‑1 (MQ=255)
ttcaggcaaTGCCAGTATTCTGGATTTCGGGTTGGGGGCGAACTGTATTTATCCGCTGAGTGGCGTACATGAATATGGCTGGCGTTTCA‑CCGGTAGTGAACCCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATacgacg < 1:279598/232‑1 (MQ=255)
tCCAGCGAATGCCAGCATTCTGGATATCGGCGTTTGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATacgacg < 2:676534/239‑1 (MQ=255)
gggAATGCCAGCATGTTGGATATCCGGGTTTGTGCGAACTGTATTTATCCGATGATTGGCCGACATGAATCTGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCAGCCATAAAAACGAG‑CAATACGAcgc‑gtc < 2:66707/237‑3 (MQ=255)
tagaagacAGTATTGTGGATATTGGTTGTGGTGGCAACTGTATTTATCCGCTGGTTGGCGTACGTGAATATTGCTGGCGTGTGA‑AGTGTAGTAAACACAGCAGGCAGGCGTTAAGCAGTGTGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTGT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCAGCCATAAAAACGAG‑CAATACGACGC‑Gccc < 1:855057/232‑1 (MQ=255)
tGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTCTCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGAGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGTGCCATTCGTCT‑GCGTCGGCAAAAAGGGGGTGGGG‑CGATTTTTAACGGCATCTACCCTAAAAACGAC‑CAAAacaaacggcccttgg > 1:860176/1‑226 (MQ=255)
tGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCCTAAAAACGAG‑CAATACGACCC‑GACCTtgt > 2:566416/1‑239 (MQ=255)
ctgttttctgtttttCGGCTGTGGTGCGAATTGATTTTACCGGGTGTTTGGCGTCAATGAATGTGTGTGGGGTTTTC‑CCGGTAGTGAAACAAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGTTTACCAGTTCTAACCCGGGGCTAAACCGCGCTATTCGTCG‑GCGTCGGCAAAAAGAGAGTGGGG‑CGTTTTTTAACGGCATCACCCAAAAAAACGAG‑CAATACGCCGC‑GACCTTGTGT‑a < 1:325393/225‑1 (MQ=255)
cATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCCAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGC‑GACCTTGTGT‑AAc > 2:208403/1‑238 (MQ=255)
cGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATACCCCATAAAAACGGG‑CAAAACGACCC‑GACCTTTGGTAAACCCCCCATccccc > 1:387804/1‑237 (MQ=255)
cGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAAGCGTTAAGCAGTGCGCAGGCGGTTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGC‑GGCTTTTTAACGGCATCCTCCATAAAAACGGG‑CACAACGCCGC‑GCCCTTGGGT‑AACCGCCCATTCCAca > 1:490404/1‑238 (MQ=255)
gtacttttttttttcggttgtttGGCGTAAATG‑ATATGGGTGGGGTTTTACCCGGTAGTGAAACCCGCCGCCGGGCGTAAAGCGGGGCGAGGGGGTTTATCATTTTTATTCCGGGGCTTAACCGCCCCATTCGTCG‑GCGTCGGCAAAAAGAGGGGGGGG‑CGTTTTTTAACGGCATCACCCCAAAAAACGAG‑CAATACGACGC‑GACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCt < 1:713585/218‑1 (MQ=255)
ttATTCATCCGCTGTGTGGGATCCTGGAATTTGGGTGGTTTTTTA‑CCGGTAGGGAAACACGCAGCCGTGCTGTAAGCGGTGCGCAGGCGATTACAAGTTCTAACCGGGGGCTTAACCGCGCAATTCGTCC‑GCTTCGGCAAAAGGAGGGTGGGG‑CAATTTTTAACGGCATAATCCATAAAAACGAG‑CAATACGAGGC‑GCCCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCa < 1:771061/238‑1 (MQ=255)
tgttttACCCGGTTATTGGCTTCAGTGAATTTGGTTGGCTTTTGA‑CCGGTAGGAAAACCAGCAGCCGGGCTTTAAGCAGGGCCAAGGCGATTACCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGC‑GACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCa < 2:136163/236‑1 (MQ=255)
tATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACCC‑GACCTTGTGG‑AACCCGCCATTCCCCGATTCCGCCGCTGCGGccc > 2:635164/1‑237 (MQ=255)
cTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTCATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCCAAAAGAGCGGGGGG‑CGATTTTTAACGGCATACTCCCTAAAACACAG‑CAAAACGAACC‑GACCCTTGGT‑AACCCACCCTTCCCAAATTCCGCCGCTGCggacgcggccgggaa > 1:58866/1‑226 (MQ=255)
cTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATaaaa < 2:437991/169‑1 (MQ=255)
cTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATaaaa > 1:437991/1‑169 (MQ=255)
cTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACCC‑GACCTTGTGT‑AACCCGCCATTCCACGATTCCCCCCCGCCGGCACGGGCAgggaa > 1:519236/1‑236 (MQ=255)
cTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGGGGGG‑CGATTTTTAACGGCCTCATCCGTAAAAACGAG‑CAA‑AAGACCCGGCCCTTGTGT‑AACCCGCCATTCCCACATTCccccgcccgggaccgggggggagg > 1:788222/1‑221 (MQ=255)
gATTGGCGTACAGGAATATGGCGGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCGGGCTTTAAGCAGGGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGAAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGC‑GACCTTGTGT‑ACCCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTg < 2:244312/239‑1 (MQ=255)
ggggggggtttttA‑CGGGTAGTAAACCCGGCCGCGGGGCGTTAAACAGTGCGCAGGGGATTACCAGTTTAAACCGGGGGCTAACCCGCGCCATTCGGTG‑GGGGGGGAAAAAAGAGAGGGGGG‑CGATTTTTAACGCCATCACCCATAAAAACGGG‑CAATCCGCCGC‑GACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAAcc < 1:566416/230‑1 (MQ=255)
ctggcGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGC‑GACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCCGGTAGTGAGCGGAAAAGCCGTAACCTgg > 2:722284/1‑239 (MQ=255)
ggcGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTAGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGC‑GACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCCCTGGGGCACGGGCAGGAAGTGAGCGTAAACGCCGTAACCCgggg > 1:67216/1‑239 (MQ=255)
gcGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGGGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACCC‑GCCCTTGTGT‑AACCCGCCATTCCCCGCTTCCGCCCCTCCGGCCCGGGCAGGTAGGAGGCGAAAAACCCGGAACCCggggg > 1:171736/1‑238 (MQ=255)
gcGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGC‑GACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGAAGTGAGCGTAAACGCCGTAACCTggg > 2:548728/1‑237 (MQ=255)
cccgggtggaaaaCCAGGAGCCGGGGTTTAAGCAGGGCGCGGGGGATTAGCAGTTCAAAGCGGGGGCTTACCCGCGCCAGTCGTCG‑GCGTGGGAAAAAAGAGAGGGGGG‑CGATTTTTAACGCCACCATCCAAAAAAACGAG‑CAATCCGACGC‑GACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACaa < 1:296114/229‑1 (MQ=255)
aaaCCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGC‑GACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCCCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGAcattgc > 2:634171/1‑233 (MQ=255)
gTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGC‑GACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGAAGATGCACTGAACTTTGGCGGCCAGCAACAg > 2:443077/1‑239 (MQ=255)
tGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGC‑GACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTCAGCGCAAACGCCGGAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCACCAACAgg > 2:227239/1‑239 (MQ=255)
gcAGGCTATTATCAGTTCAAAGCCGGGGTTTAACCGCGCCATTCGGCT‑GCGTCGGAAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCACCCATAAAACCGAG‑CAATACGACGC‑GCCCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCAGCAACAGGAg < 2:171736/238‑1 (MQ=255)
ggCGATTAACAGTTCTAATCCGGGTCTTAACCGGGCCATTCGTCT‑GCGTCGGAAAAAAGAGAGGGGGG‑CGATTTTAAACGGCATCATCCATAAAAACGAG‑CAATACGACGC‑GACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCAGCAACAGGAGTtg < 2:591993/238‑1 (MQ=255)
aTCAGTTATAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGACGGAAAAAAGAGAGGGGGG‑CAATTTTTAACGGCATCACCCATAAAAACGAG‑CAATACGACGC‑GACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCAGCAACAGGAGTTGTGGTGTGa < 2:387804/239‑1 (MQ=255)
gTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGC‑GACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCACCAACAGGGGTTGTGGTGTGAAGGc > 2:420660/1‑239 (MQ=255)
tCTAAGCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGGGTGGGG‑CGATTTTTAACGGCATCATCAATAAAAACGAG‑CAATCGGCCGG‑GACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCAGCAACAGGAGTTGTGGTGTGAAGGCg < 2:490404/238‑1 (MQ=255)
aTCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGC‑GACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGGAGTGAGCGTAAACGCCGTAACCTGGGGCTGGACAAAGACGCTGCACTGAACTTTGGCGCCCAGCAACAGGAGGGGTGGGGTGAAGACGGGGag > 1:583099/1‑238 (MQ=255)
gggCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGC‑GACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACCAAAACGATGACCTGAACTTTGGCGGCCAGCAACAGGAGTTGTGGGGTGAAGGCGGTGAAGTc > 2:17965/1‑237 (MQ=255)
gcCATTCGTTG‑GCTTCGGCAAAAAGAGAGGGGGG‑CTATTTTTAACGGCATCATCCAAAAAAACGAG‑CAATGCGACGC‑GACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCAGCAACAGGAGTTGTGGTGTGAAGGCGGTGAAGTCACCTTTATCaaaaa < 2:712672/239‑1 (MQ=255)
gcCATTCGTCG‑GGGGCGGAAAAAAGGGAGTAGGG‑CGATTTTAAACGGCATCACCCAAAAAAACGAG‑CAATACGGCGC‑GACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCAGCAACAGGAGTTGTGGTGTGAAGGCGGTGAAGTCACCTTTATCaaaaa < 2:67216/239‑1 (MQ=255)
t‑GCGCCGGAAAAAAG‑GAGTGGGGTCTTTTTTTAACGGATCCCTCAAAAAAAGCGAG‑CATAGCGGCGC‑GCCCTTGGGA‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCAGCAACAGGAGTTGTGGTGTGAAGGCGGTGAAGTCACCTTTATCAAAAAGATGATTGaa < 1:208403/239‑1 (MQ=255)
gctgcGGAAAAAGGAGAGTGGGG‑CGATTTTAAACGGCATAATCCA‑AAAAACGGGACAATCCGCCGG‑GCCCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCAGCAACAGGAGTTGTGGTGTGAAGGCGGTGAAGTCACCTTTATCAAAAAGATGATTGAag < 2:70083/235‑1 (MQ=255)
cGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGC‑GACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCAGCAACAGGAGTTGTGGTGTGAAGGCGGTGAAGTCACCTTTTTCAAAAAGATGATTGAagg > 2:619345/1‑238 (MQ=255)
gCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGC‑GACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGGAGTGCGCGTAAACACCGTAACCTGGGGCCAAACAAAGACAAGGCCCGGACCTTTTGCGGCCACAAAAAGGGGATGTGTGGGGACGGAGGGGAGGTCACCTGTTTCAAAAACAGAATTGaaagaagaa > 1:881792/1‑232 (MQ=255)
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CGGGCGGATTATATTCATCACCTTGCCGATTTACTGGCAGAAGCAAGCGGAACAATTCCAGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTA‑CCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCT‑GCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGC‑GACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCAGCAACAGGAGTTGTGGTGTGAAGGCGGTGAAGTCACCTTTATCAAAAAGATGATTGAAGAGAGCA > NC_000913/842578‑843052
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
