Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F17 I0 R1
|
155 |
84.1 |
1797446 |
90.9% |
1633878 |
230.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,992,567 |
T→C |
20.3% |
E84G (GAG→GGG) |
pgsA ← |
phosphatidylglycerophosphate synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,992,567 | 0 | T | C | 20.3%
| 116.6
/ 2.2
| 56 | E84G (GAG→GGG) | pgsA | phosphatidylglycerophosphate synthetase |
| Reads supporting (aligned to +/- strand): ref base T (28/11); new base C (7/5); total (37/19) |
| Fisher's exact test for biased strand distribution p-value = 4.81e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTACCGCAGCCACAAAGAAAAGTGCAATACCGGCGTACTCAACCCAAATGTTCGGACGCCACAGCAGCCATGCCAACGCCACCATCTGGGCAGTGGTTTTCACTTTCCCAATCCAGGAGAC‑GGCCACGCTACTGCGTTTACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGT‑‑CACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAATACAAAGAATGGGATAAGGATGACACGGAACAGTGTAAGCAACGTAGG > NC_000913/1992331‑1992802
|
gTACCGCAGCCACAAAGAAAAGTGCAATACCGGCGTACTCAACCCAAATGTTCGGACGCCACAGCAGCCATGCCAACGCCACCATCTGGGCAGTGGTTTTCACTTTCCCAATCCAGGAGAC‑GGCCACGCTACTGCGTTTACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATAATAATTT‑CACGGGCGACCATCGTTGCCGCCGGAAATGTCACCCACC‑AGCTTGGATAATGCTCg > 2:847588/1‑239 (MQ=255)
aCCGCAGCCACAAAGAAAAGGGCAATCCCGGCGTACCTAACCCAAATGGTCGGCCGCCACAGCAGCCATGCCAACGCCACCATCTGGGCAGTGGTTTTCACTTTCCCAATCCAGGAGAC‑GGCCACGCTACTGCGTTTACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCg < 2:439172/237‑1 (MQ=255)
acaAAGAAAAGTGCAATACCGGCGTACTCAACCCAAATGTTCGGACGCCACAGCAGCCATGCCAACGCCACCATCTGGGCAGTGGTTTTCACTTTCCCAATCCAGGAGAC‑GGCCACGCTACTGCGTTTACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGAGATAATTCCCGGT‑T‑ACCAGcg > 2:723192/1‑237 (MQ=255)
acaAAGAAAAGTGCAATACCGGCGTACTCAACCCAAATGTTCGGACGCCACAGCAGCCATGCCAACGCCACCATCTGGGCAGTGGTTTTCACTTTCCCAATCCAGGAGAC‑GGCCACGCTACTGCGTTTACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATAATAATTT‑CACGGACGATCATCGTGGCCACCGGTCATGTCACCCACA‑ACCTGAGATAAAACACGGT‑A‑ACCAacac > 1:46979/1‑239 (MQ=255)
aaaGTGCAATCCCGGCGTACTCAACCCAAATGTTCGGACGCCACAGCAGCCATGCCAACGCCACCATCTGGGCAGTGGTTTTCACTTTCCCAATCCAGGAGAC‑GGCCACGCTACTGCGTTTACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCg < 2:337154/239‑1 (MQ=255)
tACCGGCGTACTCAACCCAAATGTTCGGACGCCACAGCAGCCATGCCAACGCCACCATCTGGGCAGTGGTTTTCACTTTCCCAATCCAGGAGAC‑GGCCACGCTACTGCGTTTACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGGGATAATGCCCGGT‑T‑ACCAGCCCAATGGCAATAGCCACg > 2:17327/1‑239 (MQ=255)
atccGGCGTACTCAACCAAAAGTTCCGGGACCCAAAGTCGGTATGCCAAGGCCACCATCGGGCCAGTGGTTTCACCTTTCACAATCCAGGAGAC‑GGCGACACTTCTGCGTTTACCCAACT‑CCTCCATCCATTCGCGTTGCGCAGAAATAATAATGT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGG‑T‑ACCAGCCCCATGGCGATAGCCACg < 1:562044/237‑1 (MQ=255)
gCGTACTCAACCCAAATGTTCGGACGCCACAGCAGCCATGCCAACGCCACCATCTGGGCAGTGGTTTTCACTTTCCCAATCCAGGAGAC‑GGCCACGCTACTGCGTTTACCCAACT‑CCGCCATCCATTCGCGTAGCGCTGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCCCC‑AGCTGCGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCAcaaaa > 2:184867/1‑233 (MQ=255)
gCGTACTCAACCCAAATGTTCGGACGCCACAGCAGCCATGCCAACGCCACCATCTGGGCAGTGGTTTTCACTTTCCCAATCCAGGAGAC‑GGCCACGCTACTGCGTTTACCCAACT‑CCGCCACCCATTCGCGTAGCGCAGAAATAATAATTT‑CCCGGGCCATCATCGTTGCCGCCGGTACTTCAACCCACC‑AGCTGTGATAATGCACGGT‑T‑CCAAGCACCACGGCGAAAACCCAGAGaaa > 1:145279/1‑238 (MQ=255)
gCGTACTCAACCCAAATGTTCGGACGCCACAGCAGCCATGCCAACGACACCATCTGGGCAGTGGTTTTCACTTTCCCAATCCAGGAGAC‑GGCCACGCTACTGCGTTTACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAAAACTAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGGGATAATGCTCGGT‑T‑ACCAGCACCAGGGCGATAGCCACGaaaaa > 1:233187/1‑238 (MQ=255)
gCGTACTCAACCCAAATGTTCGGACGACACAGCAGCCATGCCAACGCCACCATCTGGGCAGTGGTTTTCACTTTCCCAATCCAGGAGAC‑GGCCACGCTACTGCGTTTACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAGATAATAATTT‑CACGGGCAACCATCGTTGCAGCCGGTATTGTCACCCCCC‑AACTGTGCAAATGCCTGTG‑T‑ACCAGCCCCACGGGGGAAGCCAccaaa > 1:655797/1‑233 (MQ=255)
cTCAACCCAAATGTTCGGACGCCACAGCAGCCATGCCAACGCCACCATCTGGGCAGTGGTTTTCACTTTCCCAATCCAGGAGAC‑GGCCACGCTACTGCGTTTACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATACTAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCCCGGT‑T‑ACCAGCACCATGCCGATACCCACCAGAACTTTa > 1:132626/1‑238 (MQ=255)
ccAAAGTTTGGGCCGCCACAGCAGCAATGCCACACCAACCATGTGGGAAGGGGTTTTCCCTTTCCCAACCCA‑GTGACAGGCCACGCTACTGCGTTTACCCAACC‑CCGCCATCCACTCGCGTAGCGCAGAAATAATAATTG‑CGCGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCGCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAGCTTTATCTGCca < 1:859127/239‑1 (MQ=255)
aaaTGTTCGGACGCCACAGCAGACATGCCAACGCCACCATCTGGGCAGTGGTTTTCACTTTCCCAATCCAGGAGAC‑GGCCACGCTACTGAGTTTACCCAACT‑CCGCCATCCATTTCCGTACCGCAGAAATAATAATTT‑CACGGGCGCTCACCGTGTCCGCCGGTAATGTAACCCACC‑ACCTGAGATAATGCCCGGT‑T‑CCACCCACCATAGCGAGAGCCACCAAAACTATATCTGCcaac > 1:16841/1‑237 (MQ=255)
aTGTTCGGACGCCACAGCAGCCATGCCAACGCCACCATCTGGGCAGTGGTTTTCACTTTCCCAATCCAGGAGAC‑GGCCACGCTACTGCGTTTACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGTTAGCCACGAGAACTTTATCTGCCACAgg > 2:74811/1‑239 (MQ=255)
cGGACGCCACAGCAGCCATGCCAACGCCACCATCTGGGCAGTGGTTTTCACTTTCCCAATCCAGGAGAC‑GGCCACGCTACTGCGTTTACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCCCGAGAACTTTATCTGCCACAGGGTcca > 2:329920/1‑237 (MQ=255)
cGGACGCCACAGCAGCCATGCCAACGCCACCATCTGGGCAGTGGTTTTCACTTTCCCAATCCAGGAGAC‑GGCCACGCTACTGCGTTTACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCCCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCAAAGGGGCac > 2:130624/1‑238 (MQ=255)
cccccACAGCAGCTAGGCCATAGCGACCATCTGGGCGGTGTTTTTCACTTCCCCAATCGAGGAGAC‑GGCCACGAGACTGCGTTTGCCCAACT‑CCGCCAGCCATGCCCGTGGTGCAGAAATAAGAATTC‑AAGGGGCGATCAGCGTTGCCGCCGGTAATGTCACCCACC‑AGGTGTTATAATGCCCGGT‑T‑ACCAGCACCATGGCGATAGCAGCGAGAACTTTATCTGCCACAGGGTCAAGGa < 1:330185/236‑1 (MQ=255)
cagcCATGCCAACGCCTCCTTCTGGGCAGGGTTTTTCACTTCCCCAATCCAGGGGAC‑CGCCACGCTACTGCGTTTACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCaa < 2:233187/239‑1 (MQ=255)
cGCCCCAATCTGGGCAGGGGTTTTCCCTTTCCCAATCCAGGAGAC‑GGCCACGCTACTGCGTTTACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTActct < 2:895384/239‑1 (MQ=255)
ccaTCTGGGCAGTGGTTTTCACTTTCCCAATCCAGGAGAC‑GGCCACGCTACTGCGTTTACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCCCGAAAACTTTATCTGCCAAAGGGCCAGGGAAAGAACCAAACC‑GGGACCTCTGGtt > 1:895384/1‑238 (MQ=255)
ccaTCTGGGCAGTGGTTTTCACTTTCCCAATCCAGGAGAC‑GGCCACGCTACTGCGTTTACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCCCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAAAACTTTATCTGCCACAGGGTCCAGGAAAGAACCAAACC‑GGGTACCCTGGTTc > 1:817148/1‑239 (MQ=255)
gtgTGGTTTCCAGTCTCCCAATCCAGGGGAC‑GGCCACGCTCGTGCGTTGACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATAATAATTG‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTGATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAgcggcg < 2:710065/236‑1 (MQ=255)
ccgttgTTTCCACTTTCCCAAACCAGGAAAG‑GGCCCAGTTACGTGGTTTACCCAAGC‑CCGCCATCCATTCGGGTAGCGAAGAAATAATAATTT‑CAAGGGCGATCAGCGTTGCCGCCGGTAATGTCACCAACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAgcggcg < 1:373282/233‑1 (MQ=255)
ttccccTTCCCCAATCCAGGAGCC‑GGCCCCGCTTCTGCGTTTACCCAACC‑CCGCCATCCCTTCGCGTAGCGCAAAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAGCGGCGTGCCAGaa < 1:48606/234‑1 (MQ=255)
tttCCCAATCCAGGAGAC‑GGCCACGCTACTGCGTTTACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCa > 2:48606/1‑238 (MQ=255)
tCCCAATCCAGGAGAC‑GGCCACGCTACTGCGTTTACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAACTAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACTAGCAACATGGCGATAGCCACGAGACCTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAACGGCGTCACAGAAACACATCg > 2:866968/1‑239 (MQ=255)
tCCAGGAGAC‑GGCCACGCTACTGCGTTTACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAGCGGCGTTcccacaacaccaaacacaac > 2:262905/1‑221 (MQ=255)
ggCCACGCTACTGCGTTTACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGT‑‑CAcc > 2:651609/1‑238 (MQ=255)
ggCCACGCTACTGCGTTTACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACAAGCACCATGGCGATAGCCACGAGACCTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGCACTCTGGTTCCAGCGGCGTGCCAGTAAACCATCGAACcagacagccccc > 2:237702/1‑233 (MQ=255)
cGCTACTGCGTTTACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGCAATGTCACCCCCC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCCCCATGGCGCTAGCCACGAGCACTTTATCTGCCACAGGGTCAAGGAAAGCACCAACAC‑GGGCACCCTGGCTCCAGCGGCGTGCCAGAAAACCATCGAACCAGCCAAC‑‑CAccgccggg > 1:438566/1‑237 (MQ=255)
gcattccGTTTACCCAACTCCCCCCCACCATTC‑CGAGACGCCAAAAAAAAAATTTCCCCGGCCGAGCACCGTGCCCGCCGTACATGTCCCCCTCC‑GGCTGTGAAAATGCCCGGT‑T‑CCCAGCACCATGGCGATAGCCACGAGACCTTTATCTGCCACAGGGTCAAGAAAAGCACCAACCC‑GGGGACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCATTCAGT‑‑CACCGCCGCGa < 1:469361/233‑1 (MQ=255)
tttACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAGCGGCGTCCCAAAAAACAATCGAACCAGTCAGC‑‑CACC‑CCCCGACACCGaaaaa > 1:71139/1‑238 (MQ=255)
ttACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGT‑‑CAACGCCGCGCCGCAAAAAAt > 1:372292/1‑239 (MQ=255)
aCCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGACCTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAGCGGCGTGCCCGAAAACCATCGAACCCGTAAGT‑‑ACCCCCCCCGACGCAGAAAAtaa > 1:280897/1‑237 (MQ=255)
aCCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAAc > 2:750156/1‑208 (MQ=255)
ccatccatTCGCGTAGCGCAGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGT‑‑CACCGCCGCGACGCCGAAAATGAGCGCggcggcc > 2:12481/1‑238 (MQ=255)
ccatccatTCGCGTAGCGCAGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGT‑‑CACCGCCGCGACGCAGAAACTGAGCGCGGCGGCa > 2:787242/1‑239 (MQ=255)
cctttggcccAGAAATAATATGTC‑CACGGGGTCTCCTCGGTGCCGCCGGTAAGGT‑ACCGACCGAGTTGTATAAACGCCGGGT‑T‑ACCGGACCCCTGGTGATGCCCCGGAAAGCTTTATCGGCCACAGGGTAAAGGAAAGCACCAAACC‑GGGTACCCTGGTTCCAGCGGCGTGCCAGAAAACCAGCGAACCAGCCAGT‑‑CACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGAc < 1:202719/230‑1 (MQ=255)
tAGCGCAGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGT‑‑CACCGCCGCGCCGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAgg > 2:578440/1‑239 (MQ=255)
ataatTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGT‑‑CACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGCCCAGGGGCCAGGCAGATa > 2:431263/1‑239 (MQ=255)
ataatTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGT‑‑CACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGAACAGGTGACAGGCAGATa > 2:629804/1‑239 (MQ=255)
ataatTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGCTAGT‑‑CACCGCCGCGACGCAGAAAATTAACCCGGGGGCAAACGGAGACCCGGGGACAGGCAGATa > 2:178386/1‑239 (MQ=255)
aatTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGT‑‑CACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGGGACAGGCAGATaaa > 2:523772/1‑239 (MQ=255)
ttcGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCAAAGGGTCAAGGAAAGCACCAACCC‑GGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGT‑‑CACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAATACAAAGaa < 2:280897/238‑1 (MQ=255)
tgctgcgcacccgGTAATTCCCCCCTCC‑ATCGGTGAAATTGC‑CGGTCT‑ACCAACCCCAGGGCGATACCCACGAGATCTTTACCGGCCCCGGGGTCAAGGAAAGC‑CCAAACCGGGGTACGCGGGTTCCAGCGGAGTGCCAGAAAACCATCGAACCAGTCAGT‑‑CACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAATACAAAGaa < 1:787242/229‑1 (MQ=255)
ccgGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGT‑‑CACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAATACAAAGAATGGGATAAgg > 2:586384/1‑239 (MQ=255)
cggtatctccccccccc‑AGGTTTAATAATGCTCGGT‑T‑ACCCGCCCCATGGCGATCGCCAGGAAACTTTTACCGGCCACGGGGTCAAGAAAAGCACCAACCC‑GGGTATCCGGGTTCCAGCGGCGTGCCAGAAACCCATCGAACCAGTCAGT‑‑CACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAATACAAAGAATGGGATAAGGa < 1:586384/228‑1 (MQ=255)
tgaTGTCCCCCCCC‑AGCTGTGATAATGCTCGGT‑T‑CCCAGCCCGATGGCGATAGCCACGAGAACTTTATCGGCCACAGGGTCAAGAAAAGCCCCAAACC‑GGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAATACAAAGAATGGGATAAGGa < 2:597576/236‑1 (MQ=255)
cccacaca‑aGCGGTGATCATGCGCGGT‑T‑ACCAGCACCATGGCGATAGCCGCGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGT‑‑CACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAATACAAAGAATGGGATAAGGATGACACGGa < 2:145279/235‑1 (MQ=255)
ccccccccatgtgtgATAATGCCCGTT‑TCACCA‑CACCATGGCGATAGCCCCGAAAACTTTAGCGGCCAAAGGGCCAAGGAAAGCCCCAAACC‑GGGTACTTTGGTTCCAGCGGCGCGCCAGAAACCCAGCGACCCAGTCAGT‑‑CACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAATACAAAGAATGGGATAAGGATGACACGGa < 1:578440/228‑1 (MQ=255)
ccccaccacggttgAAAACGCCCGGT‑T‑CCCAACACCTTGGCAATAGCCACGGAAACTTTATCTGCCACAGGGTCAAGGAAAGCACAAAACC‑GGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGT‑‑CACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAATACAAAGAATGGGATAAGGATGACACGGaa < 2:246660/227‑1 (MQ=255)
c‑aGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGT‑‑CACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGCTaa > 2:666647/1‑195 (MQ=255)
c‑aGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGT‑‑CACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGCGACAGGCAGATAAAAGACCAATACAAAGAATGGGTTAAGGATAACACGGAACAgtgg > 2:533403/1‑238 (MQ=255)
gCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGT‑‑CACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGGCAGGCAGATAAAAGACCAACAAAAAAAAAGGGGAAAAGATGacaagagaaaggtaaa > 1:397586/1‑226 (MQ=255)
tGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGT‑‑CACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAATACAAAGAATGGGATAAGGAGGACACGGAACAGTGTAAGccagtccct > 2:158079/1‑231 (MQ=255)
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GTACCGCAGCCACAAAGAAAAGTGCAATACCGGCGTACTCAACCCAAATGTTCGGACGCCACAGCAGCCATGCCAACGCCACCATCTGGGCAGTGGTTTTCACTTTCCCAATCCAGGAGAC‑GGCCACGCTACTGCGTTTACCCAACT‑CCGCCATCCATTCGCGTAGCGCAGAAATAATAATTT‑CACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACC‑AGCTGTGATAATGCTCGGT‑T‑ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACC‑GGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGT‑‑CACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAATACAAAGAATGGGATAAGGATGACACGGAACAGTGTAAGCAACGTAGG > NC_000913/1992331‑1992802
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
