Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A17 F57 I1 R1
|
25 |
173.1 |
3446910 |
97.6% |
3364184 |
149.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP000730 |
1,058,293 |
G→A |
A1215V (GCA→GTA) |
atl ← |
bifunctional N‑acetylmuramoyl‑L‑alanine amidase/mannosyl‑glycoprotein endo‑beta‑N‑acetylglucosaminidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP000730 | 1,058,293 | 0 | G | A | 98.9%
| 566.8
/ NA
| 186 | A1215V (GCA→GTA) | atl | bifunctional N‑acetylmuramoyl‑L‑alanine amidase/mannosyl‑glycoprotein endo‑beta‑N‑acetylglucosaminidase |
| Reads supporting (aligned to +/- strand): ref base G (2/0); major base A (108/74); minor base C (2/0); total (112/74) |
| Fisher's exact test for biased strand distribution p-value = 5.17e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 187 total aligned reads displayed.
GATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTGCAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCAGCTTGTTTAGCATATTTAATACCTTCACGTAAAGGATC > CP000730/1058147‑1058438
|
gATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACa > 2:152310/1‑149 (MQ=255)
cTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATATTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTCGCATATTGGTGTGTTCCTGGATGTACAGGAt > 2:1561784/1‑149 (MQ=255)
tATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGAtt > 1:320592/1‑149 (MQ=255)
aTGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTc > 1:1152870/1‑149 (MQ=255)
ttCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGGGTGTTCCTGGATGTACAGGATTGCac > 2:78697/1‑148 (MQ=255)
tCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCAtc > 2:474437/1‑149 (MQ=255)
tCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCAtc > 2:261416/1‑149 (MQ=255)
tCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAATAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGGACAGGCTTCGAtc > 1:160865/1‑149 (MQ=255)
cATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGTATGTACAGGATTCCAtct < 2:1165871/149‑1 (MQ=255)
aagtgtGCTTATGTGTATTGGGGGATGTCGACGGATGTGCCGACTTCGCGAATTTTATCACAGTAGCCTTTGATGATTTGATCCCTTGTGTTATCCCAATCTACATCTGTAGCATATTGGTTTGTTCCTGGATGTACAGGATTCCAtct < 2:103216/144‑1 (MQ=255)
ttGTTGCTTTTTTATATTGTGGGATGTCGACGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCTTTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCAtctc < 2:1091160/148‑1 (MQ=255)
gTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCAt < 1:165588/149‑1 (MQ=255)
gTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCAt < 1:1410265/149‑1 (MQ=255)
cTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTg < 2:253315/149‑1 (MQ=255)
tataTTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAgt < 2:489046/149‑1 (MQ=255)
atatTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAgtg > 2:61084/1‑149 (MQ=255)
atTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTa > 1:969853/1‑149 (MQ=255)
tgtgGGATGTCGAAGTATTTGCCGACATCGCCAATTTTATCAAAGTAACCTTTGATGATTTGTGCATTGATGTTAGCCCAAGCTACATCTGTGGCATATTGGTGGGTTCATGGCTGTCCAGGATTCCATCTCATTTTGTAAAGTGTAtt > 2:667515/1‑149 (MQ=255)
gtgGGATGTCGAAGTATTTGGCGACTTCGCCAATTTTAGCATGGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCAGAATAGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTACAGTGTAttt > 2:433096/1‑149 (MQ=255)
gtgGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGCTTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTAttt > 1:575798/1‑149 (MQ=255)
gATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGAc > 1:267729/1‑149 (MQ=255)
gATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGAc > 2:917753/1‑149 (MQ=255)
atctCGAAGTAGTTGCCGACGTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGAcc < 1:341174/146‑1 (MQ=255)
aTGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGTTGTACAGGATTCCATCTCATTTTGTAAAGTGTAGTTTGAcc > 1:23665/1‑149 (MQ=255)
aTGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTCAAGTGTATTTTGAcc > 1:1566778/1‑149 (MQ=255)
aTGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGAcc < 1:529458/149‑1 (MQ=255)
gTCGAAGTATTTGCCGTCTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAg < 2:273022/149‑1 (MQ=255)
tCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGc > 1:52151/1‑149 (MQ=255)
tCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGc < 2:544696/149‑1 (MQ=255)
tCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTGGACCAGc > 2:131092/1‑149 (MQ=255)
gAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCtt < 2:294870/149‑1 (MQ=255)
gAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCtt < 2:1288249/149‑1 (MQ=255)
gTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTa < 2:687481/149‑1 (MQ=255)
ttttGCCGAGTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATAGTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACa < 2:989273/148‑1 (MQ=255)
ttcggCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACa < 2:70861/145‑1 (MQ=255)
aTTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGGTAGCCCAATCTACATCTGTAGCATATTGGTGTGTGCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACa < 2:60066/149‑1 (MQ=255)
ttGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTCAATTGTATTTTGACCAGCTTTTACata < 1:960078/149‑1 (MQ=255)
ttGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACata < 1:51313/149‑1 (MQ=255)
gCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATg > 1:11662/1‑149 (MQ=255)
ccGACTTCGCCAATATTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCGGCTTTTACATATGa > 2:953584/1‑149 (MQ=255)
ggcAATTTTATCATAGTAGGCTTTGATGATTTTAGCATTGGTGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGAGTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGa < 2:514832/147‑1 (MQ=255)
gCCAATTTTCTCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGa < 1:1505797/149‑1 (MQ=255)
gCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGa < 1:1058363/149‑1 (MQ=255)
ccAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCTTAATGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAACGGTATTTTGAACAGCTTTTGCATATGAGTTGCCgcg > 2:1402972/1‑147 (MQ=255)
aTTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCAGTAGCATATTGTTGTGTTCCTGGACGTCCAGGATAACCCAAAATTTAGTATATCGTATTTTGACAAGCTGTTACATAAGATTTGCCGATGaa > 2:606058/1‑149 (MQ=255)
ttttATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCATGCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAAt < 2:625852/149‑1 (MQ=255)
ttttATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTATCATATTTGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTTTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAAt < 2:1099986/149‑1 (MQ=255)
ttttATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAAt < 1:799604/149‑1 (MQ=255)
ttATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAAttt > 1:1480001/1‑149 (MQ=255)
tatcagtggaggcTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTa < 2:381647/137‑1 (MQ=255)
cATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGca > 2:376930/1‑149 (MQ=255)
gtagCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGcaccac > 2:562510/1‑149 (MQ=255)
tagCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCaccacc > 2:1401450/1‑149 (MQ=255)
tttGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCGTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGa > 1:1220041/1‑149 (MQ=255)
gatgatTTTAGCAGTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTg < 1:867291/149‑1 (MQ=255)
tgatTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCGGAATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCt > 1:1423093/1‑149 (MQ=255)
gatTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCtt > 1:1012110/1‑149 (MQ=255)
ttttAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCtttt < 1:383115/149‑1 (MQ=255)
tttAGCTTTGATGTCAGCCCAATTTACATCTGTAGCATATTGGTGTTTTTCTGCATGTACAGGATTCCATCTCATTTTGTAAAGTTTATTTTTACCAGCTTTTACATATGAGTTGCCGATGAATTGAGCACCACCAACGATTGCTTTTg < 2:167263/149‑1 (MQ=255)
ttGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACtgt > 2:1240666/1‑149 (MQ=255)
ttGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACtgt > 1:1236002/1‑149 (MQ=255)
gATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTgtgt < 2:969853/149‑1 (MQ=255)
aTGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTc > 1:365003/1‑149 (MQ=255)
aTGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTc > 1:673532/1‑149 (MQ=255)
aTGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTc > 1:1013824/1‑149 (MQ=255)
aTGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATAGCTGTTGATACTGTGTc > 2:803707/1‑149 (MQ=255)
aTGTTAGCCCAAACTACATCTGTAGCATATTGGTATGTTCCTGGATGTACAGGATTCCATCTAATTTTGTAAAGTGAATTTTGACCAGCTTTTACATATGAGTTGCCGATGATTTTAGAACAACCAACGATTGCTTTTGATACTgtgtt > 2:121218/1‑148 (MQ=255)
ttAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCa > 1:1282440/1‑149 (MQ=255)
tAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTGTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCaa > 1:1368431/1‑149 (MQ=255)
cccAATCTACTTCTGGAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCa < 2:159519/149‑1 (MQ=255)
cccAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCa > 1:1566703/1‑149 (MQ=255)
ccAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCAg > 1:484340/1‑149 (MQ=255)
ccAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCAg > 1:1510311/1‑149 (MQ=255)
ccAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCAg > 1:301571/1‑149 (MQ=255)
ccAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGCAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGTTACTGTGTCACAACCAg > 1:1155901/1‑149 (MQ=255)
ccAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTACATATCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCTGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACGAg > 1:765856/1‑149 (MQ=255)
aTCTACATCTGTAGCATATTGGTGTGTTCCTTTATGTACAGGATTCCATCTCATGTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCAGCtt < 2:1121971/149‑1 (MQ=255)
aTCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCAGCtt < 1:917753/149‑1 (MQ=255)
cATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGTCGATGAATTTCGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCACCTTGtttt > 2:1353392/1‑148 (MQ=255)
cATCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGGTGAATTTAGCGCCTTCGACGATTGCTTTTGATACTGTGTCCCAACCAGCTTGTTTa < 1:1696601/149‑1 (MQ=255)
tCTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGCGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCAGCTTGTTTAGc > 2:1684203/1‑149 (MQ=255)
cTGTAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCCCCACCAACGATTGCTTTTGATACTGTGTCCCAACCAGCGTGTTTAGCa > 2:1413724/1‑149 (MQ=255)
tAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCAGCTTGTTTAGCatat < 2:1058218/149‑1 (MQ=255)
tAGCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCAGCTTGTTTAGCatat > 2:1107782/1‑149 (MQ=255)
aGCATAGTGGTGTGTTCCTGGAAGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCAGCTTGTTTAGCATAtt > 2:1171282/1‑149 (MQ=255)
gCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCCGCTTGTTTAGCATAttt > 1:449022/1‑149 (MQ=255)
gCATATTGGTGTGTTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCAGCTTGTTTAGCATAttt > 2:144551/1‑149 (MQ=255)
ttGGTGTGTTCCTGGATGTACAGGATTCCATCTCACTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCAGCTTGTTTAGCATATTTAATAc > 1:764116/1‑149 (MQ=255)
gtgtgtTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCAGCTTGTTTAGCATATTTAATACCtc > 1:63158/1‑148 (MQ=255)
gtgtgtTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCGTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCAGCTTGTTTAGCATATTTACTACCtt > 2:739311/1‑149 (MQ=255)
gtgtgtTCCTGGATGTACAGGATTCCATCTAATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCAGCTTGTTTAGCATATTTAATGCCtt > 2:1257991/1‑149 (MQ=255)
tgtgtTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCAGCTTGTTTAGCATATTTAATACCTTc < 1:252950/149‑1 (MQ=255)
gttgtTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCAGCTTGTTTAGCATATTTAATACCTTc < 2:19802/147‑1 (MQ=255)
gtgtTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCAGCTTGTTTAGCATATTTAATACCTTCa < 2:929651/149‑1 (MQ=255)
gtgtTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTAGACCAGATATTACACAGGAGTTAACGATGAATTTAGCACAACCAACGATTGCTTTTGATCCTGTGTCCCAACCAGCTTCTTTAGCATATTTAATACCTTCa > 2:102578/1‑149 (MQ=255)
gtTCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCAGCTTGTTTAGCATATTTAATACCTTCACg < 2:896842/149‑1 (MQ=255)
ttCCTGGATGTACACGATTCCATCTCATTTTGTAAAGTGAACTTTTACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCAGCTTGTTTAGCATATTTAATACCTTCACGt < 1:319000/149‑1 (MQ=255)
tCCTGGATGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCAGCTTGTTTAGCATATTTAATACCTTCACGTa > 1:82901/1‑149 (MQ=255)
aTGTACAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCACCGCTTGCTTTTGATACTGTGTCCCAACCAGCTTGTTTAGCATATTTAATACCTTCACGTAAAgggt > 1:505769/1‑147 (MQ=255)
aTGTACAGGATTCCATCTCATTTTATAAGGTGTATTTTAACAAGCTTTCACATAGGAGTTGCTGATGCATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCAGCTTGTTTAGTATATCTAATACCTTCACGTAAAGGAt < 2:1706810/149‑1 (MQ=255)
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GATCCTATGTTCATGTTGCTTATTTATATTGTGGGATGTCGAAGTATTTGCCGACTTCGCCAATTTTATCATAGTAGCCTTTGATGATTTTAGCATTGATGTTAGCCCAATCTACATCTGTAGCATATTGGTGTGTTCCTGGATGTGCAGGATTCCATCTCATTTTGTAAAGTGTATTTTGACCAGCTTTTACATATGAGTTGCCGATGAATTTAGCACCACCAACGATTGCTTTTGATACTGTGTCCCAACCAGCTTGTTTAGCATATTTAATACCTTCACGTAAAGGATC > CP000730/1058147‑1058438
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
