Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F17 I1 R1	9	35.8	789048	93.0%	733814	141.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP000730	2,648,382	G→A	C108C (TGC→TGT)	lltB ←	MFS family major facilitator transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	2,648,382	0	G	A	100.0%	139.7 / NA	40	C108C (TGC→TGT)	lltB	MFS family major facilitator transporter
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (24/16); total (24/16)

AAGATTGGTGCCAAAGCTGGTGCACATGATAAAAATATTTGATAGTTCGCCATAGCTTGAGCTCTACCATTATCTGTACTTAGTTTGGCTAATAAAGTTAAAGTCACGAGAGGAATAATTCCGCAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTCCCAATCCCGTTAAAAGTACTTTTTTCGAATCACGAGAATCTATACT  >  CP000730/2648260‑2648516

aaGATTGGTGCCAAAGCTGGTGCACATGATAAAAATATTTGATAGTTCGCCATAGCTTGAGCTCTACCATTATCTGTACTTAGTTTGGCTAATAAAGTTAAAGTCACGAGAGGAATAATTCCACAACCAATTGCTTGAAAt                                                                                                                      <  1:134001/141‑1 (MQ=255)

 aGATTGGTGCCAAAGCTGGTGCACATGATAAAAATATTTGATAGTTCGCCATAGCTTGAGCTCTACCATTATCTGTACTTAGTTTGGCTAATAAAGTTAAAGTCACGAGAGGAATAATTCCACAACCAATTGCTTGAAATa                                                                                                                     <  2:71104/141‑1 (MQ=255)

     tGGTGCCAAAGCTGGTGCACATGATAAAAATATTTGATAGTTCGCCATAGCTTGAGCTCTACCATTATCTGTACTTAGTTTGGCTAATAAAGTTAAAGTCACGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCt                                                                                                                 <  1:159368/141‑1 (MQ=255)

       gTGCCAAAGCTGGTGCACATGATAAAAATATTTGATAGTTCGCCATAGCTTGAGCTCTACCATTATCTGTACTTAGTTTGGCTAATAAAGTTAAAGTCACGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTg                                                                                                               <  1:291589/141‑1 (MQ=255)

           cAAAGCTGGTGCACATGATAAAAATATTTGATAGTTCGCCATAGCTTGAGCTCTACCATTATCTGTACTTAGTTTGGCTAATAAAGTTAAAGTCACGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGatat                                                                                                           >  2:62223/1‑141 (MQ=255)

            aaaGCTGGTGCACATGATAAAAATATTTGATAGTTCGCCATAGCTTGAGCTCTACCATTATCTGTACTTAGTTTGGCTAATAAAGTTAAAGTCACGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGAtata                                                                                                          >  1:323010/1‑141 (MQ=255)

            aaaGCTGGTGCACATGATAAAAATATTTGATAGTTCGCCATAGCTTGAGCTCTACCATTATCTGTACTTAGTTTGGCTAATAAAGTTAAAGTCACGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGAtata                                                                                                          >  1:5499/1‑141 (MQ=255)

                                aaaTATTTGATAGTTCGCCATAGCTTGAGCTCTACCATTATCTGTACTTAGTTTGGCTAATAAAGTTAAAGTCACGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTAtg                                                                                      >  1:273259/1‑141 (MQ=255)

                                       tGATAGTTCGCCATAGCTTGAGCTCTACCATTATCTGTACTTAGTTTGGCTAATAAAGTTAAAGTCACGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACt                                                                               <  1:348162/141‑1 (MQ=255)

                                         aTAGTTCGCCATAGCTTGAGCTCTACCATTATCTGTACTTAGTTTGGCTAATAAAGTTAAAGTCACGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGc                                                                             >  2:167769/1‑141 (MQ=255)

                                          tAGTTCGCCATAGCTTGAGCTCTACCATTATCTGTACTTAGTTTGGCTAATAAAGTTAAAGTCACGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGca                                                                            <  2:19188/141‑1 (MQ=255)

                                              tCGCCATAGCTTGAGCTCTACCATTATCTGTACTTAGTTTGGCTAATAAAGTTAAAGTCACGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACaaa                                                                        >  1:319011/1‑141 (MQ=255)

                                                           aGCTCTACCATTATCTGTACTTAGTTTGGCTAATAAAGTTAAAGTCACGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGatat                                                           >  2:269972/1‑141 (MQ=255)

                                                             ctctACCATTATCTGTACTTAGTTTGGCTAATAAAGTTAAAGTCACGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAATTTATGTGTCACTGCACAAATAAAGCTAGATATGa                                                         <  2:220304/141‑1 (MQ=255)

                                                                    atgaTCTGTACTTAGTTTGGCTAATAAAGTTAAAGTCACGAGATGAATAATTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTAt                                                  <  2:353270/138‑1 (MQ=255)

                                                                                tAGTTTGGCTAATAAAGTTAAAGTCACGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTCCCAATCCCGt                                      >  1:185470/1‑141 (MQ=255)

                                                                                tAGTTTGGCTAATAAAGTTAAAGTCACGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTCCCAATCCCGt                                      >  2:134511/1‑141 (MQ=255)

                                                                                tAGTTTGGCTAATAAAGTTAAAGTCACGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTGGATATAGCAAATAATCGACAGTTATGTATCACTGCACAAATAAAGGCACACATGATCACTATTCCCAATCCCGt                                      >  2:273669/1‑141 (MQ=255)

                                                                                            taaagttaaagtCACGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTCCCAATCCCGTTAAAAGTACttt                          >  2:127262/1‑141 (MQ=255)

                                                                                            taaagttaaagtCACGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTCCCAATCCCGTTAAAAGTACttt                          >  2:292537/1‑141 (MQ=255)

                                                                                            taaagttaaagtCACGAGAGGAATAATTCCACAACCAATTGCTTGAAATAAACTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTTCCATTCCAGTTAAAAGTACttt                          >  2:79510/1‑141 (MQ=255)

                                                                                               agttaaagtCACGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTCCCAATCCCGTTAAAAGTACtttttt                       >  1:109831/1‑141 (MQ=255)

                                                                                                gttaaagtCACGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTCCCAATCCCGTTAAAAGTACTTTTTTc                      <  2:319011/141‑1 (MQ=255)

                                                                                                     agtCACGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTAATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTCCCAATCCCGTTAAAAGTACTTTTTTCGAATc                 <  2:37273/141‑1 (MQ=255)

                                                                                                      gtCACGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTCCCAATCCCGTTAAAAGTACTTTTTTCGAATCa                >  1:167846/1‑141 (MQ=255)

                                                                                                      gtCACGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTCCCAATCCCGTTAAAAGTACTTTTTTCGAATCa                >  2:352427/1‑141 (MQ=255)

                                                                                                      gtCACGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTCCCAATCCCGTTAAAAGTACTTTTTTCGAATCa                >  1:275646/1‑141 (MQ=255)

                                                                                                          cGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTCCCAATCCCGTTAAAAGTACTTTTTTCGAATCACgag            <  2:2302/141‑1 (MQ=255)

                                                                                                          cGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTCCCAATCCCGTTAAAAGTACTTTTTTCGAATCACgag            <  2:5499/141‑1 (MQ=255)

                                                                                                          cGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTCCCAATCCCGTTAAAAGTACTTTTTTCGAATCACgag            >  2:226036/1‑141 (MQ=255)

                                                                                                          cGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTCCCAATCCCGTTAAAAGTACTTTTTTCGAATCACgag            <  2:10284/141‑1 (MQ=255)

                                                                                                          cGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTCCCAATCCCGTTAAAAGTACTTTTTTCGAATCACgag            <  2:323010/141‑1 (MQ=255)

                                                                                                          cGAGAGGAATAATTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTCCCAATCCCGTTAAAAGTACTTTTTTCGAATCACgag            <  1:317719/141‑1 (MQ=255)

                                                                                                             gagGAATAATTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTCCCAATCCCGTTAAAAGTACTTTTTTCGAATCACGAGAAt         <  1:29821/141‑1 (MQ=255)

                                                                                                                    aatTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTCCCAATCCCGTTAAAAGTACTTTTTTCGAATCACGAGAATCTATACt  >  1:175137/1‑141 (MQ=255)

                                                                                                                    aatTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTCCCAATCCCGTTAAAAGTACTTTTTTCGAATCACGAGAATCTATACt  >  1:356570/1‑141 (MQ=255)

                                                                                                                    aatTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTCCCAATCCCGTTAAAAGTACTTTTTTCGAATCACGAGAATCTATACt  >  1:276994/1‑141 (MQ=255)

                                                                                                                    aatTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTCCCAATCCCGTTAAAAGTACTTTTTTCGAATCACGAGAATCTATACt  >  1:363532/1‑141 (MQ=255)

                                                                                                                    aatTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTCCCAATCCCGTTAAAAGTACTTTTTTCGAATCACGAGAATCTATACt  >  1:161867/1‑141 (MQ=255)

                                                                                                                    aatTCCACAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTCCCAATCCCGTTAAAAGTACTTTTTTCGAATCACGAGAATCTATACt  >  2:111448/1‑141 (MQ=255)

AAGATTGGTGCCAAAGCTGGTGCACATGATAAAAATATTTGATAGTTCGCCATAGCTTGAGCTCTACCATTATCTGTACTTAGTTTGGCTAATAAAGTTAAAGTCACGAGAGGAATAATTCCGCAACCAATTGCTTGAAATAACCTTGATATAGCAAATAATATAAAGTTATGTGTCACTGCACAAATAAAGCTAGATATGATTACTATTCCCAATCCCGTTAAAAGTACTTTTTTCGAATCACGAGAATCTATACT  >  CP000730/2648260‑2648516

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A