Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F15 I0 R1	137	139.7	3319070	88.4%	2934057	138.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	1,929,870	A→C	41.1%	intergenic (‑953/‑215)	USA300HOU_1794 ← / → USA300HOU_1796	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	1,929,870	0	A	C	41.1%	48.9 / 305.7	200	intergenic (‑953/‑215)	USA300HOU_1794/USA300HOU_1796	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (65/53); new base C (43/39); total (108/92)
Fisher's exact test for biased strand distribution p-value = 7.74e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.42e-01

Only 100 of 204 total aligned reads displayed.

AGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGT  >  CP000730/1929730‑1930010

aGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGa                                                                                                                                              <  1:687652/141‑1 (MQ=255)

     aTTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCtt                                                                                                                                         <  2:438635/141‑1 (MQ=255)

       tCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTAt                                                                                                                                       >  1:893844/1‑141 (MQ=255)

          aTCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTAtttt                                                                                                                                    >  2:1121115/1‑141 (MQ=255)

            cTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCg                                                                                                                                  <  2:401195/141‑1 (MQ=255)

             tATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGt                                                                                                                                 >  2:793150/1‑141 (MQ=255)

                  gCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GCA‑TAA‑GGTGATGCTTATTTTCGTTcaca                                                                                                                            >  1:832876/1‑141 (MQ=255)

                    tAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCAcatc                                                                                                                          <  2:770331/141‑1 (MQ=255)

                           atatAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCGGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCAc                                                                                                                   <  2:759330/141‑1 (MQ=255)

                               aaCTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGt                                                                                                               >  2:1504494/1‑141 (MQ=255)

                                   tATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGtcatc                                                                                                           <  2:1206584/141‑1 (MQ=255)

                                    aTCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGtcatca                                                                                                          >  1:184202/1‑141 (MQ=255)

                                     tCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAg                                                                                                         >  2:326718/1‑141 (MQ=255)

                                        gAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTgg                                                                                                      >  2:753997/1‑141 (MQ=255)

                                         aaGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGc                                                                                                     >  2:24189/1‑141 (MQ=255)

                                              aGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGc                                                                                                >  2:781169/1‑141 (MQ=255)

                                               gtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTCC‑TTTGCTACTCATGTTCTTTCTCATCATAGCACCAGTCAGCAGTGGCTGTGctg                                                                                              <  2:1345461/134‑3 (MQ=255)

                                               gtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctg                                                                                              >  1:1178069/8‑139 (MQ=255)

                                               gtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctg                                                                                              >  1:377700/8‑139 (MQ=255)

                                               gtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTGCACATCATAGCACCAGTCATCAGTGGCTGTGctg                                                                                              >  1:1535795/8‑139 (MQ=255)

                                                tagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgt                                                                                             <  1:1309695/135‑4 (MQ=255)

                                                 gACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAt                                                                                             >  2:1601841/1‑141 (MQ=255)

                                                 gACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAt                                                                                             >  1:1127000/1‑141 (MQ=255)

                                                 gACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAt                                                                                             <  2:862931/141‑1 (MQ=255)

                                                 agatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgtt                                                                                            >  2:185500/6‑137 (MQ=255)

                                                 agatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgtt                                                                                            <  2:715002/136‑5 (MQ=255)

                                                  gatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgttg                                                                                           <  1:404582/137‑6 (MQ=255)

                                                  gatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgttg                                                                                           <  2:1656859/137‑6 (MQ=255)

                                                  gatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgttg                                                                                           >  1:1135401/5‑136 (MQ=255)

                                                  aCTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAtt                                                                                            >  1:95482/1‑141 (MQ=255)

                                                  aCTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAtt                                                                                            >  1:95058/1‑141 (MQ=255)

                                                   atatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgttgc                                                                                          >  2:1558170/4‑135 (MQ=255)

                                                   atatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgttgc                                                                                          <  2:884479/138‑7 (MQ=255)

                                                    tgtgCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGc                                                                                          >  2:1071957/1‑141 (MQ=255)

                                                     atgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGt                                                                                        <  1:1558170/140‑1 (MQ=255)

                                                       gCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGtt                                                                                       <  2:1448315/141‑1 (MQ=255)

                                                        cTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatt                                                                                     <  2:604171/141‑4 (MQ=255)

                                                         ttGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                                                                                    <  2:1540901/141‑5 (MQ=255)

                                                          tgtatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattat                                                                                   >  2:62587/13‑139 (MQ=255)

                                                            tataTTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGttttttt                                                                                  <  1:611918/141‑1 (MQ=255)

                                                               atTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCtt                                                                               >  2:1315681/1‑141 (MQ=255)

                                                                 ttGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTAt                                                                             <  1:1066229/141‑1 (MQ=255)

                                                                  cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatt                                                                                     >  2:953128/5‑128 (MQ=255)

                                                                  cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTAttt                                                                           >  1:1160939/5‑140 (MQ=255)

                                                                  cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTg                                                                           >  2:419108/5‑141 (MQ=255)

                                                                  cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑ATTGCTAATCATGTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTg                                                                           >  2:656539/5‑141 (MQ=255)

                                                                  cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCA‑TTACTTTGCTAATCATTTTCGTTCACATCATAACACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTg                                                                           >  2:518595/5‑141 (MQ=255)

                                                                  cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGCAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTg                                                                           <  1:782490/137‑1 (MQ=255)

                                                                    ccGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTgg                                                                          >  1:1519713/1‑141 (MQ=255)

                                                                    cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc                                                                         <  1:1619207/139‑1 (MQ=255)

                                                                     agatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt                                                                        >  1:303314/2‑141 (MQ=255)

                                                                      gatgatATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCt                                                                        <  2:199270/141‑1 (MQ=255)

                                                                        gggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCA‑TTACTTTGCTAATCAGTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttag                                                                     >  1:1569239/4‑138 (MQ=255)

                                                                         gatATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAg                                                                     <  1:753997/141‑1 (MQ=255)

                                                                          atatAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGt                                                                    >  1:562697/1‑141 (MQ=255)

                                                                           tataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa                                                                  <  2:260133/141‑2 (MQ=255)

                                                                              aataatAGAGACGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACg                                                               >  2:578323/1‑141 (MQ=255)

                                                                               ataatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGc                                                              <  2:1101199/137‑1 (MQ=255)

                                                                                 aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgttgc                                                                                          >  1:586757/3‑105 (MQ=255)

                                                                                  atagAGTCGCCTATCTCTCAGGCGTCAAGT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaac                                                           <  2:1651970/140‑2 (MQ=255)

                                                                                   tagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaaca                                                          >  2:907281/1‑139 (MQ=255)

                                                                                    agagTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATa                                                          >  1:1503160/1‑141 (MQ=255)

                                                                                    agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa                                                         <  2:1170798/141‑4 (MQ=255)

                                                                                    agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa                                                         >  1:483866/1‑138 (MQ=255)

                                                                                     gagTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATAc                                                         <  1:1643263/141‑1 (MQ=255)

                                                                                      agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaat                                                       >  1:659176/1‑136 (MQ=255)

                                                                                      agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaat                                                       <  1:333207/141‑6 (MQ=255)

                                                                                       gTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACaa                                                       <  1:1601841/141‑1 (MQ=255)

                                                                                       gTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACaa                                                       >  2:875771/1‑141 (MQ=255)

                                                                                       gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaata                                                      >  2:1063340/1‑135 (MQ=255)

                                                                                       gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaata                                                      <  1:1116210/141‑7 (MQ=255)

                                                                                       gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaata                                                      <  2:622170/141‑7 (MQ=255)

                                                                                       gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGATGGGG‑TAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaata                                                      >  1:798539/1‑135 (MQ=255)

                                                                                        tCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACaaa                                                      <  1:1464183/141‑1 (MQ=255)

                                                                                          gCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAAt                                                    >  2:1261408/1‑141 (MQ=255)

                                                                                          gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                                                   <  2:377700/141‑10 (MQ=255)

                                                                                          gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                                                   <  1:107660/141‑10 (MQ=255)

                                                                                            cTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAAAAg                                                  >  1:828419/1‑141 (MQ=255)

                                                                                            cTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattatactt                                                                               >  2:14523/1‑102 (MQ=255)

                                                                                            cTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattatactt                                                                               <  1:14523/111‑10 (MQ=255)

                                                                                            cTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaa                                                 <  2:1009074/141‑12 (MQ=255)

                                                                                            cTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCATTAC‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaa                                                 >  1:1433287/1‑130 (MQ=255)

                                                                                            cTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGT‑GCA‑TTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGGAAACGCaacaaataattaa                                                 >  1:389714/1‑130 (MQ=255)

                                                                                               tctctcAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTCGACGCAATACAAAATAGGTg                                               >  1:627953/1‑141 (MQ=255)

                                                                                                       gCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAg                                       >  2:398026/1‑141 (MQ=255)

                                                                                                          tCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACACAATAGGTAACATATACCCg                                    >  2:593632/1‑141 (MQ=255)

                                                                                                           cAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGc                                   >  1:234803/1‑141 (MQ=255)

                                                                                                           cAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGc                                   >  1:1014603/1‑141 (MQ=255)

                                                                                                              tttAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCAcc                                <  2:82037/141‑1 (MQ=255)

                                                                                                                 aGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATGTAGCCGCACCAAt                             >  2:136528/1‑141 (MQ=255)

                                                                                                                  gACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATa                            <  2:219729/141‑1 (MQ=255)

                                                                                                                    cGCAGAGAGGAGGT‑GTA‑TAA‑GTTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATaaa                          <  2:148404/141‑1 (MQ=255)

                                                                                                                     gCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATaaaa                         >  1:1089195/1‑141 (MQ=255)

                                                                                                                     gCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATaaaa                         >  1:71364/1‑141 (MQ=255)

                                                                                                                              aggT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGTCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCa                >  2:767599/1‑141 (MQ=255)

                                                                                                                                        aa‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCa        >  1:482454/1‑141 (MQ=255)

                                                                                                                                           ggTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTatttgcgg      <  1:433283/141‑8 (MQ=255)

                                                                                                                                           ggTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCaaa      <  2:273451/141‑1 (MQ=255)

                                                                                                                                           ggTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCaaa      <  1:1002215/141‑1 (MQ=255)

                                                                                                                                            gTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTatttgcggt     <  2:310055/141‑9 (MQ=255)

AGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGT‑GTA‑TAA‑GGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGT  >  CP000730/1929730‑1930010

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A