Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F106 I0 R1
|
421 |
125.2 |
4599244 |
98.2% |
4516457 |
137.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
438,743 |
C→A |
7.3% |
G479C (GGC→TGC) |
dxs ← |
1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 438,743 | 0 | C | A | 7.3%
| 382.1
/ 14.4
| 109 | G479C (GGC→TGC) | dxs | 1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
| Reads supporting (aligned to +/- strand): ref base C (51/50); new base A (4/4); total (55/54) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 112 total aligned reads displayed.
TGGCGTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGATCAAAAGCACCCTGATGGGTT > NC_000913/438596‑438891
|
tGGCGTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCa > 2:1017565/1‑149 (MQ=255)
tGGCGTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCa > 2:1017369/1‑149 (MQ=255)
ggCGTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCAc > 4:989330/1‑149 (MQ=255)
cGTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCAcgc < 4:834886/149‑1 (MQ=255)
gTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCAcgcg > 4:640242/1‑149 (MQ=255)
gTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCAcgcg > 2:1067770/1‑149 (MQ=255)
gTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCAcgcg > 4:265711/1‑149 (MQ=255)
cGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAgc < 3:972111/149‑1 (MQ=255)
gATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAgcg < 3:723694/149‑1 (MQ=255)
gACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTg > 2:721310/1‑149 (MQ=255)
gACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTg > 4:1056285/1‑149 (MQ=255)
aCTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGa > 1:308645/1‑149 (MQ=255)
tttCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACg > 4:175932/1‑149 (MQ=255)
tttCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACg > 2:680967/1‑149 (MQ=255)
tttCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACg > 4:467670/1‑149 (MQ=255)
ttCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACgg < 2:576397/149‑1 (MQ=255)
gccgcTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGcc > 1:357875/1‑149 (MQ=255)
gccgcTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGcc > 1:14751/1‑149 (MQ=255)
gcTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATc < 2:108777/149‑1 (MQ=255)
ttCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGt < 4:205465/149‑1 (MQ=255)
ttCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGt < 2:36381/149‑1 (MQ=255)
tCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGtt < 4:212577/149‑1 (MQ=255)
ggCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTtata < 3:265711/149‑1 (MQ=255)
aTCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTg > 4:983844/1‑149 (MQ=255)
aTCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTg > 1:1078255/1‑149 (MQ=255)
tCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGa < 4:1073760/149‑1 (MQ=255)
tACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCg < 1:1033113/149‑1 (MQ=255)
ccAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAAAGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGt < 1:1017565/149‑1 (MQ=255)
aaaGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGtat > 3:271825/1‑149 (MQ=255)
aGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATag < 2:146698/149‑1 (MQ=255)
gTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATaga < 3:527496/149‑1 (MQ=255)
gTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATaga < 2:907174/149‑1 (MQ=255)
ttAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATagag < 1:478199/149‑1 (MQ=255)
gATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCt > 1:332755/1‑149 (MQ=255)
cGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGc < 3:989330/149‑1 (MQ=255)
tcGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGtt < 2:1059233/149‑1 (MQ=255)
cGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGttt < 2:357875/149‑1 (MQ=255)
cACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTg < 1:668701/112‑1 (MQ=255)
cACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTg > 2:668701/1‑112 (MQ=255)
gCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGtttt < 2:183904/141‑1 (MQ=255)
gCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGtttt > 1:183904/1‑141 (MQ=255)
gCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTc < 4:271825/149‑1 (MQ=255)
cTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTGGCAACGCggtc > 1:976804/1‑72 (MQ=255)
cTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTGGCAACGCggtc < 2:976804/74‑3 (MQ=255)
ttCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCAt > 3:283983/1‑142 (MQ=255)
ttCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCgg > 3:233013/1‑149 (MQ=255)
ttCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCgg < 3:490223/149‑1 (MQ=255)
tCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCggg < 1:1067770/149‑1 (MQ=255)
cacaATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCgggg > 4:668792/1‑149 (MQ=255)
acaATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGt > 4:1040651/1‑149 (MQ=255)
acaATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGt > 3:347284/1‑149 (MQ=255)
acaATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCACTCGGGGt < 3:1056285/149‑1 (MQ=255)
aaTGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCa > 4:325153/1‑149 (MQ=255)
tGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATa < 4:233013/149‑1 (MQ=255)
cTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATg > 2:42222/1‑149 (MQ=255)
tttGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATaa > 3:699399/1‑146 (MQ=255)
tttGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGa < 1:680967/149‑1 (MQ=255)
tttGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGa > 1:76875/1‑149 (MQ=255)
ttGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGAc < 3:640242/149‑1 (MQ=255)
ccAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTtat > 4:359493/1‑85 (MQ=255)
ccAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCAt > 3:965907/1‑149 (MQ=255)
aaTTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCAttt > 4:182136/1‑149 (MQ=255)
aTTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTc > 4:102735/1‑149 (MQ=255)
ggTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCgg < 4:956464/149‑1 (MQ=255)
gTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCa < 3:375259/119‑1 (MQ=255)
gTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCa > 4:375259/1‑119 (MQ=255)
gTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGt < 3:983844/149‑1 (MQ=255)
gTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGt > 1:222802/1‑149 (MQ=255)
tAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTa < 3:175932/149‑1 (MQ=255)
tAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTa > 1:714485/1‑149 (MQ=255)
tttttCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGa < 4:1138294/60‑1 (MQ=255)
tttttCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGa > 3:1138294/1‑60 (MQ=255)
tttttCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGc > 2:150360/1‑149 (MQ=255)
tttttCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGc > 3:1125569/1‑149 (MQ=255)
cAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCa < 4:347284/149‑1 (MQ=255)
aGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAg < 2:14751/149‑1 (MQ=255)
aGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAg < 1:391944/149‑1 (MQ=255)
aGCCGCGACAGTTCCACCCCGACCGCGTTGCCACGCGGGGAGCACACAGCTGACGGGCCATCGTTATAGTGATAGCTGGTATGGAGCATCAGACGAAATTCGCGTTCATCGATCGGGGCCATAATGACCCTTTCCGGTAGGCAGCGCAg > 2:515476/1‑149 (MQ=255)
gcggcgTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAgg > 3:646239/1‑149 (MQ=255)
gTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAaga < 4:965907/149‑1 (MQ=255)
gTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAaga < 2:205677/149‑1 (MQ=255)
gTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAaga < 2:222802/149‑1 (MQ=255)
tCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAagag > 1:876046/1‑149 (MQ=255)
aGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAagagag > 3:310215/1‑149 (MQ=255)
ttCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGAt > 4:702017/1‑149 (MQ=255)
aCGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATaga > 4:934623/1‑70 (MQ=255)
cGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGATCaaaa < 1:1017369/149‑1 (MQ=255)
ctacccGCGTGGCAACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGAc < 2:75389/106‑1 (MQ=255)
tacccGCGTGGCAACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGtt > 4:257154/4‑85 (MQ=255)
tacccGCGTGGCAACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGtt < 3:257154/82‑1 (MQ=255)
cGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCg > 1:665850/1‑59 (MQ=255)
cGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCg < 2:665850/59‑1 (MQ=255)
acccGCGTGGCAACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGAt < 1:8239/138‑1 (MQ=255)
acccGCGTGGCAACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGAt > 2:8239/3‑140 (MQ=255)
aCCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGATCAAAAGCAcc > 3:1108355/1‑149 (MQ=255)
gTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGATCAAAAGCACCCTGAt < 4:646239/149‑1 (MQ=255)
ttGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGATCAAAAGCACCCTGATg < 3:325153/149‑1 (MQ=255)
gCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGATCAAAAGCACCCTGATggg > 4:994982/1‑149 (MQ=255)
ccACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGATCAAAAGCACCCTGATGGGt < 3:467670/149‑1 (MQ=255)
cACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGATCAAAAGCACCCTGATGGGtt < 3:1040651/149‑1 (MQ=255)
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TGGCGTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGATCAAAAGCACCCTGATGGGTT > NC_000913/438596‑438891
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
