Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F176 I0 R1
|
792 |
112.0 |
3729108 |
98.1% |
3658254 |
142.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,701,843 |
Δ1 bp |
6.3% |
intergenic (+9/+21) |
yhjV → / ← dppF |
putative transporter/dipeptide/heme ABC transporter ATPas |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,701,843 | 0 | G | . | 6.3%
| 437.9
/ 21.2
| 127 | intergenic (+9/+21) | yhjV/dppF | putative transporter/dipeptide/heme ABC transporter ATPas |
| Reads supporting (aligned to +/- strand): ref base G (64/55); new base . (5/3); total (69/58) |
| Fisher's exact test for biased strand distribution p-value = 7.26e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.18e-01 |
Only 100 of 131 total aligned reads displayed.
TTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGC > NC_000913/3701698‑3701991
|
ttGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCAt > 2:780646/1‑149 (MQ=255)
tgtgTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATg < 1:167033/149‑1 (MQ=255)
gtgtCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACGGTTGAAGCTGATTGAGTAAACCGGAGCGCATg‑g < 1:657580/149‑1 (MQ=255)
tgtCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑Gc > 4:428396/1‑149 (MQ=255)
gTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCg > 2:580795/1‑149 (MQ=255)
gTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTACTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGTAGCGCATG‑GCCCCg > 2:497954/1‑149 (MQ=255)
ccTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGtt < 2:531396/149‑1 (MQ=255)
cTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGttt > 3:213807/1‑149 (MQ=255)
cTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGttt > 1:523208/1‑149 (MQ=255)
tCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGGGC‑CATGCGCTCCGGttta < 1:475175/149‑2 (MQ=255)
tCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGtttt < 2:383797/149‑1 (MQ=255)
cATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTtg < 4:242564/149‑1 (MQ=255)
gTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGtt > 3:477608/1‑149 (MQ=255)
tGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGGGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGc > 4:841177/1‑149 (MQ=255)
tGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGc > 4:392650/1‑149 (MQ=255)
gATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCg > 3:830952/1‑149 (MQ=255)
gATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCg < 2:929467/149‑1 (MQ=255)
ataAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGAttt < 4:283305/149‑1 (MQ=255)
ataAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGAttt > 2:849993/1‑149 (MQ=255)
taAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGAtttt < 3:369765/149‑1 (MQ=255)
taAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGAtttt < 3:706109/149‑1 (MQ=255)
aaaGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTc > 4:17091/1‑149 (MQ=255)
cacaACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGTATTTTCATCCTGa > 2:626229/1‑149 (MQ=255)
cacaACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGa < 4:139120/149‑1 (MQ=255)
acaACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGGGC‑CATGCGCTCCGGttta > 4:6689/1‑117 (MQ=255)
acaACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGAt < 3:692839/149‑1 (MQ=255)
aaCTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCa > 2:338188/1‑149 (MQ=255)
aaCTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCa > 1:585790/1‑149 (MQ=255)
aCTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGGGC‑CATGCGCTCCGGttta < 1:630434/115‑2 (MQ=255)
aCTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCaa > 1:69388/1‑149 (MQ=255)
cTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAAc < 2:582651/149‑1 (MQ=255)
tGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACa < 3:17091/149‑1 (MQ=255)
gAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGAt > 1:892610/1‑142 (MQ=255)
gAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGAt < 2:892610/142‑1 (MQ=255)
gAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGc > 3:219244/1‑149 (MQ=255)
aaCTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAACCCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCaaaa < 4:533657/149‑1 (MQ=255)
aCTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAAc < 2:138541/149‑1 (MQ=255)
ttCGTGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACaa < 1:351079/149‑1 (MQ=255)
tCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAg < 4:744711/149‑1 (MQ=255)
tCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAg < 3:651497/149‑1 (MQ=255)
tCGCGGATTTAAAGCCTGGCTGATTCTACTGTACGGCATTTTGCTATGCTTGTCGCCACGGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCCGCGGATTTTCATCCTGATCAACAGCAAAACAAg < 1:497954/149‑1 (MQ=255)
cgcgGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGc < 1:125639/149‑1 (MQ=255)
cgcgGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACCCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGc < 4:876195/149‑1 (MQ=255)
ggATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTAc < 1:780646/149‑1 (MQ=255)
tttAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAg > 2:200601/1‑149 (MQ=255)
tAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGtt < 2:215368/149‑1 (MQ=255)
aaGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGa < 3:822664/149‑1 (MQ=255)
aGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGAc > 4:225930/1‑149 (MQ=255)
cTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGAccgc < 3:151242/149‑1 (MQ=255)
ttCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTaa < 2:101887/89‑1 (MQ=255)
ttCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTaa > 1:101887/1‑89 (MQ=255)
tCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCtt > 3:433768/1‑149 (MQ=255)
tCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCtt < 2:835018/149‑1 (MQ=255)
gctgTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTa < 2:904852/149‑1 (MQ=255)
gTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTTATCAACAGCAAAACAAGCTACCAGTTGACCGCTGTAGTCTTTTAGCt < 4:213807/149‑1 (MQ=255)
tACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTg > 1:14023/1‑149 (MQ=255)
ggCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGTAGCGCATG‑GCCCCGGCTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAACTACCAGTTGACCGCCGTAGTCTTTTAGCTGCgg > 4:743158/1‑149 (MQ=255)
ggCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATc < 4:733575/95‑1 (MQ=255)
ggCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCgg > 4:231713/1‑149 (MQ=255)
ggCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCgg > 2:406877/1‑149 (MQ=255)
cATGTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCATTTAGCTGCGGCt > 4:787813/1‑149 (MQ=255)
ttttGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGc > 3:504962/1‑149 (MQ=255)
tttGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCa > 3:311271/1‑149 (MQ=255)
tATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACGGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGa > 1:767165/1‑89 (MQ=255)
tATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGa < 2:767165/89‑1 (MQ=255)
tATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTgg > 3:183725/1‑149 (MQ=255)
tATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTgg < 2:621954/149‑1 (MQ=255)
tGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGt < 3:787813/149‑1 (MQ=255)
ttGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGa > 2:868386/1‑58 (MQ=255)
ttGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGAt < 3:553264/85‑1 (MQ=255)
tGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAg < 3:225930/149‑1 (MQ=255)
tCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAggg < 1:360511/149‑1 (MQ=255)
tCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAggg < 1:849993/149‑1 (MQ=255)
gCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTGTTGTGAGTTAACGCTGCGGATATTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGAACGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGc > 2:611950/1‑149 (MQ=255)
cACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGtt > 1:343540/1‑102 (MQ=255)
cACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGtt < 2:343540/102‑1 (MQ=255)
tGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAg > 1:683268/1‑149 (MQ=255)
ttGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAgcg > 1:400684/1‑149 (MQ=255)
gCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCcgac > 4:499616/1‑149 (MQ=255)
gATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCgacgac > 1:462980/1‑149 (MQ=255)
aTTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACa > 2:168473/1‑149 (MQ=255)
ttGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAg > 4:423108/1‑149 (MQ=255)
tcacaaaaCCGGGGC‑CATGCGCTCCGGTTTTGTGAGTTAACGCTGCGGAATTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGAGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGc > 2:351309/6‑149 (MQ=255)
acaaaaCCGGGGC‑CATGCGCTCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCgg > 4:883412/4‑149 (MQ=255)
acaaaaCCGGGGC‑CATGCGCTCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCgg > 2:515787/4‑149 (MQ=255)
gTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCt < 4:418252/97‑1 (MQ=255)
gTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCggg > 3:377308/1‑149 (MQ=255)
tAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGc > 4:676711/1‑149 (MQ=255)
tAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGc > 3:704943/1‑149 (MQ=255)
aaCCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACt > 3:812927/1‑113 (MQ=255)
aCCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGtt > 3:667792/1‑149 (MQ=255)
aCCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGtt > 2:742792/1‑149 (MQ=255)
ccGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATATTCATCCTGATGAACAGCAAAACAAGCTACGAGATGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAGGCGCCGACGACAGCGGGCGTTg > 2:673594/1‑149 (MQ=255)
cGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGa > 4:27235/1‑149 (MQ=255)
cGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGa > 4:180570/1‑149 (MQ=255)
gAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAg < 2:400684/149‑1 (MQ=255)
gAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAg < 4:504962/149‑1 (MQ=255)
aGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAgg < 3:15069/149‑1 (MQ=255)
cgcATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGgcg > 2:316514/1‑149 (MQ=255)
gcATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGgcgc < 2:462980/149‑1 (MQ=255)
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TTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGC > NC_000913/3701698‑3701991
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
